Job ID = 16440167 SRX = SRX12178837 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2022-08-02T08:25:25 prefetch.2.10.7: 1) Downloading 'SRR15888077'... 2022-08-02T08:25:26 prefetch.2.10.7: Downloading via HTTPS... 2022-08-02T08:27:57 prefetch.2.10.7: HTTPS download succeed 2022-08-02T08:27:57 prefetch.2.10.7: 1) 'SRR15888077' was downloaded successfully 2022-08-02T08:27:57 prefetch.2.10.7: 'SRR15888077' has 0 unresolved dependencies Read 52733625 spots for SRR15888077/SRR15888077.sra Written 52733625 spots for SRR15888077/SRR15888077.sra fastq に変換しました。 bowtie でマッピング中... Your job 16441094 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:57:18 52733625 reads; of these: 52733625 (100.00%) were paired; of these: 13606962 (25.80%) aligned concordantly 0 times 34022074 (64.52%) aligned concordantly exactly 1 time 5104589 (9.68%) aligned concordantly >1 times ---- 13606962 pairs aligned concordantly 0 times; of these: 6117588 (44.96%) aligned discordantly 1 time ---- 7489374 pairs aligned 0 times concordantly or discordantly; of these: 14978748 mates make up the pairs; of these: 8428664 (56.27%) aligned 0 times 4885354 (32.62%) aligned exactly 1 time 1664730 (11.11%) aligned >1 times 92.01% overall alignment rate Time searching: 00:57:18 Overall time: 00:57:18 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 40 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 7603715 / 45103889 = 0.1686 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 18:53:13: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178837/SRX12178837.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178837/SRX12178837.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178837/SRX12178837.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178837/SRX12178837.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 18:53:13: #1 read tag files... INFO @ Tue, 02 Aug 2022 18:53:13: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 18:53:18: 1000000 INFO @ Tue, 02 Aug 2022 18:53:24: 2000000 INFO @ Tue, 02 Aug 2022 18:53:30: 3000000 INFO @ Tue, 02 Aug 2022 18:53:35: 4000000 INFO @ Tue, 02 Aug 2022 18:53:41: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 18:53:43: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178837/SRX12178837.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178837/SRX12178837.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178837/SRX12178837.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178837/SRX12178837.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 18:53:43: #1 read tag files... INFO @ Tue, 02 Aug 2022 18:53:43: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 18:53:47: 6000000 INFO @ Tue, 02 Aug 2022 18:53:49: 1000000 INFO @ Tue, 02 Aug 2022 18:53:53: 7000000 INFO @ Tue, 02 Aug 2022 18:53:55: 2000000 INFO @ Tue, 02 Aug 2022 18:53:59: 8000000 INFO @ Tue, 02 Aug 2022 18:54:00: 3000000 INFO @ Tue, 02 Aug 2022 18:54:05: 9000000 INFO @ Tue, 02 Aug 2022 18:54:06: 4000000 INFO @ Tue, 02 Aug 2022 18:54:10: 10000000 INFO @ Tue, 02 Aug 2022 18:54:11: 5000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 18:54:13: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178837/SRX12178837.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178837/SRX12178837.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178837/SRX12178837.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178837/SRX12178837.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 18:54:13: #1 read tag files... INFO @ Tue, 02 Aug 2022 18:54:13: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 18:54:15: 11000000 INFO @ Tue, 02 Aug 2022 18:54:16: 6000000 INFO @ Tue, 02 Aug 2022 18:54:19: 1000000 INFO @ Tue, 02 Aug 2022 18:54:21: 12000000 INFO @ Tue, 02 Aug 2022 18:54:22: 7000000 INFO @ Tue, 02 Aug 2022 18:54:24: 2000000 INFO @ Tue, 02 Aug 2022 18:54:27: 13000000 INFO @ Tue, 02 Aug 2022 18:54:27: 8000000 INFO @ Tue, 02 Aug 2022 18:54:30: 3000000 INFO @ Tue, 02 Aug 2022 18:54:32: 9000000 INFO @ Tue, 02 Aug 2022 18:54:32: 14000000 INFO @ Tue, 02 Aug 2022 18:54:35: 4000000 INFO @ Tue, 02 Aug 2022 18:54:37: 10000000 INFO @ Tue, 02 Aug 2022 18:54:38: 15000000 INFO @ Tue, 02 Aug 2022 18:54:41: 5000000 INFO @ Tue, 02 Aug 2022 18:54:43: 11000000 INFO @ Tue, 02 Aug 2022 18:54:44: 16000000 INFO @ Tue, 02 Aug 2022 18:54:46: 6000000 INFO @ Tue, 02 Aug 2022 18:54:48: 12000000 INFO @ Tue, 02 Aug 2022 18:54:49: 17000000 INFO @ Tue, 02 Aug 2022 18:54:52: 7000000 INFO @ Tue, 02 Aug 2022 18:54:53: 13000000 INFO @ Tue, 02 Aug 2022 18:54:54: 18000000 INFO @ Tue, 02 Aug 2022 18:54:57: 8000000 INFO @ Tue, 02 Aug 2022 18:54:58: 14000000 INFO @ Tue, 02 Aug 2022 18:55:00: 19000000 INFO @ Tue, 02 Aug 2022 18:55:02: 9000000 INFO @ Tue, 02 Aug 2022 18:55:03: 15000000 INFO @ Tue, 02 Aug 2022 18:55:05: 20000000 INFO @ Tue, 02 Aug 2022 18:55:07: 10000000 INFO @ Tue, 02 Aug 2022 18:55:09: 16000000 INFO @ Tue, 02 Aug 2022 18:55:11: 21000000 INFO @ Tue, 02 Aug 2022 18:55:13: 11000000 INFO @ Tue, 02 Aug 2022 18:55:14: 17000000 INFO @ Tue, 02 Aug 2022 18:55:17: 22000000 INFO @ Tue, 02 Aug 2022 18:55:19: 12000000 INFO @ Tue, 02 Aug 2022 18:55:19: 18000000 INFO @ Tue, 02 Aug 2022 18:55:22: 23000000 INFO @ Tue, 02 Aug 2022 18:55:24: 13000000 INFO @ Tue, 02 Aug 2022 18:55:25: 19000000 INFO @ Tue, 02 Aug 2022 18:55:27: 24000000 INFO @ Tue, 02 Aug 2022 18:55:30: 14000000 INFO @ Tue, 02 Aug 2022 18:55:30: 20000000 INFO @ Tue, 02 Aug 2022 18:55:33: 25000000 INFO @ Tue, 02 Aug 2022 18:55:35: 15000000 INFO @ Tue, 02 Aug 2022 18:55:36: 21000000 INFO @ Tue, 02 Aug 2022 18:55:38: 26000000 INFO @ Tue, 02 Aug 2022 18:55:40: 16000000 INFO @ Tue, 02 Aug 2022 18:55:41: 22000000 INFO @ Tue, 02 Aug 2022 18:55:44: 27000000 INFO @ Tue, 02 Aug 2022 18:55:46: 17000000 INFO @ Tue, 02 Aug 2022 18:55:46: 23000000 INFO @ Tue, 02 Aug 2022 18:55:49: 28000000 INFO @ Tue, 02 Aug 2022 18:55:51: 18000000 INFO @ Tue, 02 Aug 2022 18:55:52: 24000000 INFO @ Tue, 02 Aug 2022 18:55:54: 29000000 INFO @ Tue, 02 Aug 2022 18:55:56: 19000000 INFO @ Tue, 02 Aug 2022 18:55:57: 25000000 INFO @ Tue, 02 Aug 2022 18:55:59: 30000000 INFO @ Tue, 02 Aug 2022 18:56:01: 20000000 INFO @ Tue, 02 Aug 2022 18:56:03: 26000000 INFO @ Tue, 02 Aug 2022 18:56:04: 31000000 INFO @ Tue, 02 Aug 2022 18:56:06: 21000000 INFO @ Tue, 02 Aug 2022 18:56:08: 27000000 INFO @ Tue, 02 Aug 2022 18:56:10: 32000000 INFO @ Tue, 02 Aug 2022 18:56:11: 22000000 INFO @ Tue, 02 Aug 2022 18:56:13: 28000000 INFO @ Tue, 02 Aug 2022 18:56:15: 33000000 INFO @ Tue, 02 Aug 2022 18:56:17: 23000000 INFO @ Tue, 02 Aug 2022 18:56:19: 29000000 INFO @ Tue, 02 Aug 2022 18:56:20: 34000000 INFO @ Tue, 02 Aug 2022 18:56:22: 24000000 INFO @ Tue, 02 Aug 2022 18:56:24: 30000000 INFO @ Tue, 02 Aug 2022 18:56:25: 35000000 INFO @ Tue, 02 Aug 2022 18:56:27: 25000000 INFO @ Tue, 02 Aug 2022 18:56:29: 31000000 INFO @ Tue, 02 Aug 2022 18:56:30: 36000000 INFO @ Tue, 02 Aug 2022 18:56:32: 26000000 INFO @ Tue, 02 Aug 2022 18:56:35: 32000000 INFO @ Tue, 02 Aug 2022 18:56:36: 37000000 INFO @ Tue, 02 Aug 2022 18:56:38: 27000000 INFO @ Tue, 02 Aug 2022 18:56:40: 33000000 INFO @ Tue, 02 Aug 2022 18:56:42: 38000000 INFO @ Tue, 02 Aug 2022 18:56:43: 28000000 INFO @ Tue, 02 Aug 2022 18:56:45: 34000000 INFO @ Tue, 02 Aug 2022 18:56:48: 39000000 INFO @ Tue, 02 Aug 2022 18:56:48: 29000000 INFO @ Tue, 02 Aug 2022 18:56:51: 35000000 INFO @ Tue, 02 Aug 2022 18:56:53: 30000000 INFO @ Tue, 02 Aug 2022 18:56:53: 40000000 INFO @ Tue, 02 Aug 2022 18:56:56: 36000000 INFO @ Tue, 02 Aug 2022 18:56:58: 31000000 INFO @ Tue, 02 Aug 2022 18:56:59: 41000000 INFO @ Tue, 02 Aug 2022 18:57:02: 37000000 INFO @ Tue, 02 Aug 2022 18:57:04: 32000000 INFO @ Tue, 02 Aug 2022 18:57:05: 42000000 INFO @ Tue, 02 Aug 2022 18:57:07: 38000000 INFO @ Tue, 02 Aug 2022 18:57:09: 33000000 INFO @ Tue, 02 Aug 2022 18:57:10: 43000000 INFO @ Tue, 02 Aug 2022 18:57:13: 39000000 INFO @ Tue, 02 Aug 2022 18:57:14: 34000000 INFO @ Tue, 02 Aug 2022 18:57:16: 44000000 INFO @ Tue, 02 Aug 2022 18:57:19: 35000000 INFO @ Tue, 02 Aug 2022 18:57:19: 40000000 INFO @ Tue, 02 Aug 2022 18:57:21: 45000000 INFO @ Tue, 02 Aug 2022 18:57:24: 36000000 INFO @ Tue, 02 Aug 2022 18:57:25: 41000000 INFO @ Tue, 02 Aug 2022 18:57:26: 46000000 INFO @ Tue, 02 Aug 2022 18:57:30: 37000000 INFO @ Tue, 02 Aug 2022 18:57:30: 42000000 INFO @ Tue, 02 Aug 2022 18:57:31: 47000000 INFO @ Tue, 02 Aug 2022 18:57:36: 48000000 INFO @ Tue, 02 Aug 2022 18:57:36: 38000000 INFO @ Tue, 02 Aug 2022 18:57:36: 43000000 INFO @ Tue, 02 Aug 2022 18:57:41: 49000000 INFO @ Tue, 02 Aug 2022 18:57:41: 44000000 INFO @ Tue, 02 Aug 2022 18:57:41: 39000000 INFO @ Tue, 02 Aug 2022 18:57:45: 50000000 INFO @ Tue, 02 Aug 2022 18:57:46: 45000000 INFO @ Tue, 02 Aug 2022 18:57:47: 40000000 INFO @ Tue, 02 Aug 2022 18:57:50: 51000000 INFO @ Tue, 02 Aug 2022 18:57:51: 46000000 INFO @ Tue, 02 Aug 2022 18:57:52: 41000000 INFO @ Tue, 02 Aug 2022 18:57:55: 52000000 INFO @ Tue, 02 Aug 2022 18:57:56: 47000000 INFO @ Tue, 02 Aug 2022 18:57:58: 42000000 INFO @ Tue, 02 Aug 2022 18:58:01: 53000000 INFO @ Tue, 02 Aug 2022 18:58:01: 48000000 INFO @ Tue, 02 Aug 2022 18:58:04: 43000000 INFO @ Tue, 02 Aug 2022 18:58:06: 54000000 INFO @ Tue, 02 Aug 2022 18:58:06: 49000000 INFO @ Tue, 02 Aug 2022 18:58:09: 44000000 INFO @ Tue, 02 Aug 2022 18:58:11: 55000000 INFO @ Tue, 02 Aug 2022 18:58:11: 50000000 INFO @ Tue, 02 Aug 2022 18:58:14: 45000000 INFO @ Tue, 02 Aug 2022 18:58:16: 56000000 INFO @ Tue, 02 Aug 2022 18:58:16: 51000000 INFO @ Tue, 02 Aug 2022 18:58:19: 46000000 INFO @ Tue, 02 Aug 2022 18:58:21: 57000000 INFO @ Tue, 02 Aug 2022 18:58:21: 52000000 INFO @ Tue, 02 Aug 2022 18:58:24: 47000000 INFO @ Tue, 02 Aug 2022 18:58:26: 58000000 INFO @ Tue, 02 Aug 2022 18:58:26: 53000000 INFO @ Tue, 02 Aug 2022 18:58:29: 48000000 INFO @ Tue, 02 Aug 2022 18:58:31: 59000000 INFO @ Tue, 02 Aug 2022 18:58:32: 54000000 INFO @ Tue, 02 Aug 2022 18:58:34: 49000000 INFO @ Tue, 02 Aug 2022 18:58:36: 60000000 INFO @ Tue, 02 Aug 2022 18:58:37: 55000000 INFO @ Tue, 02 Aug 2022 18:58:39: 50000000 INFO @ Tue, 02 Aug 2022 18:58:41: 56000000 INFO @ Tue, 02 Aug 2022 18:58:42: 61000000 INFO @ Tue, 02 Aug 2022 18:58:44: 51000000 INFO @ Tue, 02 Aug 2022 18:58:47: 57000000 INFO @ Tue, 02 Aug 2022 18:58:47: 62000000 INFO @ Tue, 02 Aug 2022 18:58:49: 52000000 INFO @ Tue, 02 Aug 2022 18:58:52: 58000000 INFO @ Tue, 02 Aug 2022 18:58:53: 63000000 INFO @ Tue, 02 Aug 2022 18:58:54: 53000000 INFO @ Tue, 02 Aug 2022 18:58:57: 59000000 INFO @ Tue, 02 Aug 2022 18:58:59: 64000000 INFO @ Tue, 02 Aug 2022 18:59:00: 54000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 02 Aug 2022 18:59:03: 60000000 INFO @ Tue, 02 Aug 2022 18:59:05: 65000000 INFO @ Tue, 02 Aug 2022 18:59:05: 55000000 INFO @ Tue, 02 Aug 2022 18:59:08: 61000000 INFO @ Tue, 02 Aug 2022 18:59:10: 56000000 INFO @ Tue, 02 Aug 2022 18:59:10: 66000000 INFO @ Tue, 02 Aug 2022 18:59:13: 62000000 INFO @ Tue, 02 Aug 2022 18:59:16: 57000000 INFO @ Tue, 02 Aug 2022 18:59:16: 67000000 INFO @ Tue, 02 Aug 2022 18:59:19: 63000000 INFO @ Tue, 02 Aug 2022 18:59:21: 58000000 INFO @ Tue, 02 Aug 2022 18:59:22: 68000000 INFO @ Tue, 02 Aug 2022 18:59:24: 64000000 INFO @ Tue, 02 Aug 2022 18:59:26: 59000000 INFO @ Tue, 02 Aug 2022 18:59:28: 69000000 INFO @ Tue, 02 Aug 2022 18:59:30: 65000000 INFO @ Tue, 02 Aug 2022 18:59:32: 60000000 INFO @ Tue, 02 Aug 2022 18:59:34: 70000000 INFO @ Tue, 02 Aug 2022 18:59:35: 66000000 INFO @ Tue, 02 Aug 2022 18:59:37: 61000000 INFO @ Tue, 02 Aug 2022 18:59:39: 71000000 INFO @ Tue, 02 Aug 2022 18:59:41: 67000000 INFO @ Tue, 02 Aug 2022 18:59:42: 62000000 INFO @ Tue, 02 Aug 2022 18:59:45: 72000000 INFO @ Tue, 02 Aug 2022 18:59:46: 68000000 INFO @ Tue, 02 Aug 2022 18:59:48: 63000000 INFO @ Tue, 02 Aug 2022 18:59:51: 73000000 INFO @ Tue, 02 Aug 2022 18:59:52: 69000000 INFO @ Tue, 02 Aug 2022 18:59:53: 64000000 INFO @ Tue, 02 Aug 2022 18:59:57: 70000000 INFO @ Tue, 02 Aug 2022 18:59:57: 74000000 INFO @ Tue, 02 Aug 2022 18:59:59: 65000000 INFO @ Tue, 02 Aug 2022 19:00:03: 71000000 INFO @ Tue, 02 Aug 2022 19:00:03: 75000000 INFO @ Tue, 02 Aug 2022 19:00:04: 66000000 INFO @ Tue, 02 Aug 2022 19:00:08: 72000000 INFO @ Tue, 02 Aug 2022 19:00:09: 76000000 INFO @ Tue, 02 Aug 2022 19:00:10: 67000000 INFO @ Tue, 02 Aug 2022 19:00:13: 73000000 INFO @ Tue, 02 Aug 2022 19:00:15: 77000000 INFO @ Tue, 02 Aug 2022 19:00:15: 68000000 INFO @ Tue, 02 Aug 2022 19:00:19: 74000000 INFO @ Tue, 02 Aug 2022 19:00:21: 78000000 INFO @ Tue, 02 Aug 2022 19:00:21: 69000000 INFO @ Tue, 02 Aug 2022 19:00:24: 75000000 INFO @ Tue, 02 Aug 2022 19:00:26: 70000000 INFO @ Tue, 02 Aug 2022 19:00:26: 79000000 INFO @ Tue, 02 Aug 2022 19:00:30: 76000000 INFO @ Tue, 02 Aug 2022 19:00:32: 71000000 INFO @ Tue, 02 Aug 2022 19:00:32: 80000000 BigWig に変換しました。 INFO @ Tue, 02 Aug 2022 19:00:35: 77000000 INFO @ Tue, 02 Aug 2022 19:00:37: 72000000 INFO @ Tue, 02 Aug 2022 19:00:38: 81000000 INFO @ Tue, 02 Aug 2022 19:00:40: 78000000 INFO @ Tue, 02 Aug 2022 19:00:43: 73000000 INFO @ Tue, 02 Aug 2022 19:00:43: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 19:00:43: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 19:00:43: #1 total tags in treatment: 32170476 INFO @ Tue, 02 Aug 2022 19:00:43: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 19:00:43: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 19:00:44: #1 tags after filtering in treatment: 20112549 INFO @ Tue, 02 Aug 2022 19:00:44: #1 Redundant rate of treatment: 0.37 INFO @ Tue, 02 Aug 2022 19:00:44: #1 finished! INFO @ Tue, 02 Aug 2022 19:00:44: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 19:00:44: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 19:00:45: #2 number of paired peaks: 389 WARNING @ Tue, 02 Aug 2022 19:00:45: Fewer paired peaks (389) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 389 pairs to build model! INFO @ Tue, 02 Aug 2022 19:00:45: start model_add_line... INFO @ Tue, 02 Aug 2022 19:00:45: start X-correlation... INFO @ Tue, 02 Aug 2022 19:00:45: end of X-cor INFO @ Tue, 02 Aug 2022 19:00:45: #2 finished! INFO @ Tue, 02 Aug 2022 19:00:45: #2 predicted fragment length is 28 bps INFO @ Tue, 02 Aug 2022 19:00:45: #2 alternative fragment length(s) may be 4,28,61 bps INFO @ Tue, 02 Aug 2022 19:00:45: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178837/SRX12178837.05_model.r WARNING @ Tue, 02 Aug 2022 19:00:45: #2 Since the d (28) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 19:00:45: #2 You may need to consider one of the other alternative d(s): 4,28,61 WARNING @ Tue, 02 Aug 2022 19:00:45: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 19:00:45: #3 Call peaks... INFO @ Tue, 02 Aug 2022 19:00:45: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 19:00:46: 79000000 INFO @ Tue, 02 Aug 2022 19:00:48: 74000000 INFO @ Tue, 02 Aug 2022 19:00:51: 80000000 INFO @ Tue, 02 Aug 2022 19:00:54: 75000000 INFO @ Tue, 02 Aug 2022 19:00:57: 81000000 INFO @ Tue, 02 Aug 2022 19:00:59: 76000000 INFO @ Tue, 02 Aug 2022 19:01:02: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 19:01:02: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 19:01:02: #1 total tags in treatment: 32170476 INFO @ Tue, 02 Aug 2022 19:01:02: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 19:01:02: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 19:01:02: #1 tags after filtering in treatment: 20112549 INFO @ Tue, 02 Aug 2022 19:01:02: #1 Redundant rate of treatment: 0.37 INFO @ Tue, 02 Aug 2022 19:01:02: #1 finished! INFO @ Tue, 02 Aug 2022 19:01:02: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 19:01:02: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 19:01:04: #2 number of paired peaks: 389 WARNING @ Tue, 02 Aug 2022 19:01:04: Fewer paired peaks (389) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 389 pairs to build model! INFO @ Tue, 02 Aug 2022 19:01:04: start model_add_line... INFO @ Tue, 02 Aug 2022 19:01:04: start X-correlation... INFO @ Tue, 02 Aug 2022 19:01:04: end of X-cor INFO @ Tue, 02 Aug 2022 19:01:04: #2 finished! INFO @ Tue, 02 Aug 2022 19:01:04: #2 predicted fragment length is 28 bps INFO @ Tue, 02 Aug 2022 19:01:04: #2 alternative fragment length(s) may be 4,28,61 bps INFO @ Tue, 02 Aug 2022 19:01:04: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178837/SRX12178837.10_model.r WARNING @ Tue, 02 Aug 2022 19:01:04: #2 Since the d (28) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 19:01:04: #2 You may need to consider one of the other alternative d(s): 4,28,61 WARNING @ Tue, 02 Aug 2022 19:01:04: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 19:01:04: #3 Call peaks... INFO @ Tue, 02 Aug 2022 19:01:04: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 19:01:05: 77000000 INFO @ Tue, 02 Aug 2022 19:01:10: 78000000 INFO @ Tue, 02 Aug 2022 19:01:15: 79000000 INFO @ Tue, 02 Aug 2022 19:01:19: 80000000 INFO @ Tue, 02 Aug 2022 19:01:24: 81000000 INFO @ Tue, 02 Aug 2022 19:01:27: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 19:01:29: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 19:01:29: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 19:01:29: #1 total tags in treatment: 32170476 INFO @ Tue, 02 Aug 2022 19:01:29: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 19:01:29: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 19:01:29: #1 tags after filtering in treatment: 20112549 INFO @ Tue, 02 Aug 2022 19:01:29: #1 Redundant rate of treatment: 0.37 INFO @ Tue, 02 Aug 2022 19:01:29: #1 finished! INFO @ Tue, 02 Aug 2022 19:01:29: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 19:01:29: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 19:01:31: #2 number of paired peaks: 389 WARNING @ Tue, 02 Aug 2022 19:01:31: Fewer paired peaks (389) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 389 pairs to build model! INFO @ Tue, 02 Aug 2022 19:01:31: start model_add_line... INFO @ Tue, 02 Aug 2022 19:01:31: start X-correlation... INFO @ Tue, 02 Aug 2022 19:01:31: end of X-cor INFO @ Tue, 02 Aug 2022 19:01:31: #2 finished! INFO @ Tue, 02 Aug 2022 19:01:31: #2 predicted fragment length is 28 bps INFO @ Tue, 02 Aug 2022 19:01:31: #2 alternative fragment length(s) may be 4,28,61 bps INFO @ Tue, 02 Aug 2022 19:01:31: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178837/SRX12178837.20_model.r WARNING @ Tue, 02 Aug 2022 19:01:31: #2 Since the d (28) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 19:01:31: #2 You may need to consider one of the other alternative d(s): 4,28,61 WARNING @ Tue, 02 Aug 2022 19:01:31: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 19:01:31: #3 Call peaks... INFO @ Tue, 02 Aug 2022 19:01:31: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 19:01:44: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 19:01:47: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178837/SRX12178837.05_peaks.xls INFO @ Tue, 02 Aug 2022 19:01:47: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178837/SRX12178837.05_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 19:01:47: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178837/SRX12178837.05_summits.bed INFO @ Tue, 02 Aug 2022 19:01:48: Done! pass1 - making usageList (14 chroms): 3 millis pass2 - checking and writing primary data (16908 records, 4 fields): 16 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 19:02:03: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178837/SRX12178837.10_peaks.xls INFO @ Tue, 02 Aug 2022 19:02:03: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178837/SRX12178837.10_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 19:02:03: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178837/SRX12178837.10_summits.bed INFO @ Tue, 02 Aug 2022 19:02:03: Done! pass1 - making usageList (13 chroms): 1 millis pass2 - checking and writing primary data (4027 records, 4 fields): 5 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 19:02:12: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 19:02:31: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178837/SRX12178837.20_peaks.xls INFO @ Tue, 02 Aug 2022 19:02:31: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178837/SRX12178837.20_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 19:02:31: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178837/SRX12178837.20_summits.bed INFO @ Tue, 02 Aug 2022 19:02:31: Done! pass1 - making usageList (1 chroms): 1 millis pass2 - checking and writing primary data (6 records, 4 fields): 1 millis CompletedMACS2peakCalling