Job ID = 16440155 SRX = SRX12178829 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2022-08-02T08:22:28 prefetch.2.10.7: 1) Downloading 'SRR15888085'... 2022-08-02T08:22:28 prefetch.2.10.7: Downloading via HTTPS... 2022-08-02T08:25:14 prefetch.2.10.7: HTTPS download succeed 2022-08-02T08:25:14 prefetch.2.10.7: 1) 'SRR15888085' was downloaded successfully 2022-08-02T08:25:14 prefetch.2.10.7: 'SRR15888085' has 0 unresolved dependencies Read 47259593 spots for SRR15888085/SRR15888085.sra Written 47259593 spots for SRR15888085/SRR15888085.sra fastq に変換しました。 bowtie でマッピング中... Your job 16441183 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:14:08 47259593 reads; of these: 47259593 (100.00%) were paired; of these: 14431787 (30.54%) aligned concordantly 0 times 28359657 (60.01%) aligned concordantly exactly 1 time 4468149 (9.45%) aligned concordantly >1 times ---- 14431787 pairs aligned concordantly 0 times; of these: 5564451 (38.56%) aligned discordantly 1 time ---- 8867336 pairs aligned 0 times concordantly or discordantly; of these: 17734672 mates make up the pairs; of these: 10997163 (62.01%) aligned 0 times 4901142 (27.64%) aligned exactly 1 time 1836367 (10.35%) aligned >1 times 88.37% overall alignment rate Time searching: 01:14:08 Overall time: 01:14:08 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 36 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 7608279 / 38296829 = 0.1987 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 19:15:53: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178829/SRX12178829.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178829/SRX12178829.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178829/SRX12178829.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178829/SRX12178829.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 19:15:53: #1 read tag files... INFO @ Tue, 02 Aug 2022 19:15:53: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 19:16:01: 1000000 INFO @ Tue, 02 Aug 2022 19:16:10: 2000000 INFO @ Tue, 02 Aug 2022 19:16:19: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 19:16:23: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178829/SRX12178829.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178829/SRX12178829.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178829/SRX12178829.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178829/SRX12178829.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 19:16:23: #1 read tag files... INFO @ Tue, 02 Aug 2022 19:16:23: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 19:16:27: 4000000 INFO @ Tue, 02 Aug 2022 19:16:31: 1000000 INFO @ Tue, 02 Aug 2022 19:16:36: 5000000 INFO @ Tue, 02 Aug 2022 19:16:39: 2000000 INFO @ Tue, 02 Aug 2022 19:16:44: 6000000 INFO @ Tue, 02 Aug 2022 19:16:47: 3000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 19:16:53: 7000000 INFO @ Tue, 02 Aug 2022 19:16:54: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178829/SRX12178829.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178829/SRX12178829.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178829/SRX12178829.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178829/SRX12178829.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 19:16:54: #1 read tag files... INFO @ Tue, 02 Aug 2022 19:16:54: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 19:16:56: 4000000 INFO @ Tue, 02 Aug 2022 19:17:02: 8000000 INFO @ Tue, 02 Aug 2022 19:17:03: 1000000 INFO @ Tue, 02 Aug 2022 19:17:05: 5000000 INFO @ Tue, 02 Aug 2022 19:17:11: 9000000 INFO @ Tue, 02 Aug 2022 19:17:12: 2000000 INFO @ Tue, 02 Aug 2022 19:17:13: 6000000 INFO @ Tue, 02 Aug 2022 19:17:20: 3000000 INFO @ Tue, 02 Aug 2022 19:17:20: 10000000 INFO @ Tue, 02 Aug 2022 19:17:22: 7000000 INFO @ Tue, 02 Aug 2022 19:17:29: 4000000 INFO @ Tue, 02 Aug 2022 19:17:29: 11000000 INFO @ Tue, 02 Aug 2022 19:17:31: 8000000 INFO @ Tue, 02 Aug 2022 19:17:37: 5000000 INFO @ Tue, 02 Aug 2022 19:17:39: 12000000 INFO @ Tue, 02 Aug 2022 19:17:40: 9000000 INFO @ Tue, 02 Aug 2022 19:17:46: 6000000 INFO @ Tue, 02 Aug 2022 19:17:48: 13000000 INFO @ Tue, 02 Aug 2022 19:17:50: 10000000 INFO @ Tue, 02 Aug 2022 19:17:55: 7000000 INFO @ Tue, 02 Aug 2022 19:17:57: 14000000 INFO @ Tue, 02 Aug 2022 19:17:58: 11000000 INFO @ Tue, 02 Aug 2022 19:18:04: 8000000 INFO @ Tue, 02 Aug 2022 19:18:06: 15000000 INFO @ Tue, 02 Aug 2022 19:18:07: 12000000 INFO @ Tue, 02 Aug 2022 19:18:13: 9000000 INFO @ Tue, 02 Aug 2022 19:18:16: 16000000 INFO @ Tue, 02 Aug 2022 19:18:16: 13000000 INFO @ Tue, 02 Aug 2022 19:18:22: 10000000 INFO @ Tue, 02 Aug 2022 19:18:25: 14000000 INFO @ Tue, 02 Aug 2022 19:18:26: 17000000 INFO @ Tue, 02 Aug 2022 19:18:31: 11000000 INFO @ Tue, 02 Aug 2022 19:18:35: 15000000 INFO @ Tue, 02 Aug 2022 19:18:35: 18000000 INFO @ Tue, 02 Aug 2022 19:18:40: 12000000 INFO @ Tue, 02 Aug 2022 19:18:44: 16000000 INFO @ Tue, 02 Aug 2022 19:18:45: 19000000 INFO @ Tue, 02 Aug 2022 19:18:49: 13000000 INFO @ Tue, 02 Aug 2022 19:18:54: 17000000 INFO @ Tue, 02 Aug 2022 19:18:55: 20000000 INFO @ Tue, 02 Aug 2022 19:18:59: 14000000 INFO @ Tue, 02 Aug 2022 19:19:03: 18000000 INFO @ Tue, 02 Aug 2022 19:19:05: 21000000 INFO @ Tue, 02 Aug 2022 19:19:07: 15000000 INFO @ Tue, 02 Aug 2022 19:19:12: 19000000 INFO @ Tue, 02 Aug 2022 19:19:15: 22000000 INFO @ Tue, 02 Aug 2022 19:19:16: 16000000 INFO @ Tue, 02 Aug 2022 19:19:21: 20000000 INFO @ Tue, 02 Aug 2022 19:19:24: 17000000 INFO @ Tue, 02 Aug 2022 19:19:25: 23000000 INFO @ Tue, 02 Aug 2022 19:19:31: 21000000 INFO @ Tue, 02 Aug 2022 19:19:32: 18000000 INFO @ Tue, 02 Aug 2022 19:19:35: 24000000 INFO @ Tue, 02 Aug 2022 19:19:40: 22000000 INFO @ Tue, 02 Aug 2022 19:19:42: 19000000 INFO @ Tue, 02 Aug 2022 19:19:45: 25000000 INFO @ Tue, 02 Aug 2022 19:19:49: 23000000 INFO @ Tue, 02 Aug 2022 19:19:51: 20000000 INFO @ Tue, 02 Aug 2022 19:19:54: 26000000 INFO @ Tue, 02 Aug 2022 19:19:59: 24000000 INFO @ Tue, 02 Aug 2022 19:20:00: 21000000 INFO @ Tue, 02 Aug 2022 19:20:04: 27000000 INFO @ Tue, 02 Aug 2022 19:20:09: 25000000 INFO @ Tue, 02 Aug 2022 19:20:10: 22000000 INFO @ Tue, 02 Aug 2022 19:20:14: 28000000 INFO @ Tue, 02 Aug 2022 19:20:18: 26000000 INFO @ Tue, 02 Aug 2022 19:20:19: 23000000 INFO @ Tue, 02 Aug 2022 19:20:24: 29000000 INFO @ Tue, 02 Aug 2022 19:20:28: 27000000 INFO @ Tue, 02 Aug 2022 19:20:29: 24000000 INFO @ Tue, 02 Aug 2022 19:20:34: 30000000 INFO @ Tue, 02 Aug 2022 19:20:37: 28000000 INFO @ Tue, 02 Aug 2022 19:20:38: 25000000 INFO @ Tue, 02 Aug 2022 19:20:43: 31000000 INFO @ Tue, 02 Aug 2022 19:20:46: 29000000 INFO @ Tue, 02 Aug 2022 19:20:47: 26000000 INFO @ Tue, 02 Aug 2022 19:20:52: 32000000 INFO @ Tue, 02 Aug 2022 19:20:55: 30000000 INFO @ Tue, 02 Aug 2022 19:20:57: 27000000 INFO @ Tue, 02 Aug 2022 19:21:02: 33000000 INFO @ Tue, 02 Aug 2022 19:21:05: 31000000 INFO @ Tue, 02 Aug 2022 19:21:06: 28000000 INFO @ Tue, 02 Aug 2022 19:21:11: 34000000 INFO @ Tue, 02 Aug 2022 19:21:15: 32000000 INFO @ Tue, 02 Aug 2022 19:21:16: 29000000 INFO @ Tue, 02 Aug 2022 19:21:20: 35000000 INFO @ Tue, 02 Aug 2022 19:21:24: 33000000 INFO @ Tue, 02 Aug 2022 19:21:25: 30000000 INFO @ Tue, 02 Aug 2022 19:21:30: 36000000 INFO @ Tue, 02 Aug 2022 19:21:34: 34000000 INFO @ Tue, 02 Aug 2022 19:21:35: 31000000 INFO @ Tue, 02 Aug 2022 19:21:39: 37000000 INFO @ Tue, 02 Aug 2022 19:21:43: 35000000 INFO @ Tue, 02 Aug 2022 19:21:44: 32000000 INFO @ Tue, 02 Aug 2022 19:21:48: 38000000 INFO @ Tue, 02 Aug 2022 19:21:53: 36000000 INFO @ Tue, 02 Aug 2022 19:21:54: 33000000 INFO @ Tue, 02 Aug 2022 19:21:57: 39000000 INFO @ Tue, 02 Aug 2022 19:22:03: 37000000 INFO @ Tue, 02 Aug 2022 19:22:03: 34000000 INFO @ Tue, 02 Aug 2022 19:22:07: 40000000 INFO @ Tue, 02 Aug 2022 19:22:13: 38000000 INFO @ Tue, 02 Aug 2022 19:22:13: 35000000 INFO @ Tue, 02 Aug 2022 19:22:17: 41000000 INFO @ Tue, 02 Aug 2022 19:22:22: 39000000 INFO @ Tue, 02 Aug 2022 19:22:23: 36000000 INFO @ Tue, 02 Aug 2022 19:22:26: 42000000 INFO @ Tue, 02 Aug 2022 19:22:32: 40000000 INFO @ Tue, 02 Aug 2022 19:22:32: 37000000 INFO @ Tue, 02 Aug 2022 19:22:37: 43000000 INFO @ Tue, 02 Aug 2022 19:22:41: 38000000 INFO @ Tue, 02 Aug 2022 19:22:41: 41000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 02 Aug 2022 19:22:47: 44000000 INFO @ Tue, 02 Aug 2022 19:22:51: 42000000 INFO @ Tue, 02 Aug 2022 19:22:51: 39000000 INFO @ Tue, 02 Aug 2022 19:22:56: 45000000 INFO @ Tue, 02 Aug 2022 19:23:01: 40000000 INFO @ Tue, 02 Aug 2022 19:23:01: 43000000 INFO @ Tue, 02 Aug 2022 19:23:06: 46000000 INFO @ Tue, 02 Aug 2022 19:23:10: 41000000 INFO @ Tue, 02 Aug 2022 19:23:11: 44000000 INFO @ Tue, 02 Aug 2022 19:23:15: 47000000 INFO @ Tue, 02 Aug 2022 19:23:20: 42000000 INFO @ Tue, 02 Aug 2022 19:23:20: 45000000 INFO @ Tue, 02 Aug 2022 19:23:23: 48000000 INFO @ Tue, 02 Aug 2022 19:23:29: 46000000 INFO @ Tue, 02 Aug 2022 19:23:29: 43000000 INFO @ Tue, 02 Aug 2022 19:23:33: 49000000 INFO @ Tue, 02 Aug 2022 19:23:38: 47000000 INFO @ Tue, 02 Aug 2022 19:23:38: 44000000 INFO @ Tue, 02 Aug 2022 19:23:42: 50000000 INFO @ Tue, 02 Aug 2022 19:23:47: 48000000 INFO @ Tue, 02 Aug 2022 19:23:47: 45000000 INFO @ Tue, 02 Aug 2022 19:23:51: 51000000 INFO @ Tue, 02 Aug 2022 19:23:54: 49000000 INFO @ Tue, 02 Aug 2022 19:23:56: 46000000 INFO @ Tue, 02 Aug 2022 19:23:59: 52000000 INFO @ Tue, 02 Aug 2022 19:24:03: 50000000 INFO @ Tue, 02 Aug 2022 19:24:05: 47000000 INFO @ Tue, 02 Aug 2022 19:24:08: 53000000 INFO @ Tue, 02 Aug 2022 19:24:10: 51000000 INFO @ Tue, 02 Aug 2022 19:24:13: 48000000 INFO @ Tue, 02 Aug 2022 19:24:16: 54000000 INFO @ Tue, 02 Aug 2022 19:24:18: 52000000 INFO @ Tue, 02 Aug 2022 19:24:22: 49000000 INFO @ Tue, 02 Aug 2022 19:24:24: 55000000 INFO @ Tue, 02 Aug 2022 19:24:27: 53000000 INFO @ Tue, 02 Aug 2022 19:24:30: 50000000 INFO @ Tue, 02 Aug 2022 19:24:31: 56000000 BigWig に変換しました。 INFO @ Tue, 02 Aug 2022 19:24:36: 54000000 INFO @ Tue, 02 Aug 2022 19:24:38: 51000000 INFO @ Tue, 02 Aug 2022 19:24:39: 57000000 INFO @ Tue, 02 Aug 2022 19:24:44: 55000000 INFO @ Tue, 02 Aug 2022 19:24:46: 52000000 INFO @ Tue, 02 Aug 2022 19:24:47: 58000000 INFO @ Tue, 02 Aug 2022 19:24:53: 56000000 INFO @ Tue, 02 Aug 2022 19:24:54: 53000000 INFO @ Tue, 02 Aug 2022 19:24:54: 59000000 INFO @ Tue, 02 Aug 2022 19:25:01: 57000000 INFO @ Tue, 02 Aug 2022 19:25:02: 60000000 INFO @ Tue, 02 Aug 2022 19:25:02: 54000000 INFO @ Tue, 02 Aug 2022 19:25:10: 58000000 INFO @ Tue, 02 Aug 2022 19:25:11: 61000000 INFO @ Tue, 02 Aug 2022 19:25:12: 55000000 INFO @ Tue, 02 Aug 2022 19:25:19: 59000000 INFO @ Tue, 02 Aug 2022 19:25:19: 62000000 INFO @ Tue, 02 Aug 2022 19:25:21: 56000000 INFO @ Tue, 02 Aug 2022 19:25:27: 63000000 INFO @ Tue, 02 Aug 2022 19:25:28: 60000000 INFO @ Tue, 02 Aug 2022 19:25:29: 57000000 INFO @ Tue, 02 Aug 2022 19:25:36: 64000000 INFO @ Tue, 02 Aug 2022 19:25:36: 61000000 INFO @ Tue, 02 Aug 2022 19:25:37: 58000000 INFO @ Tue, 02 Aug 2022 19:25:44: 65000000 INFO @ Tue, 02 Aug 2022 19:25:45: 62000000 INFO @ Tue, 02 Aug 2022 19:25:46: 59000000 INFO @ Tue, 02 Aug 2022 19:25:52: 66000000 INFO @ Tue, 02 Aug 2022 19:25:54: 63000000 INFO @ Tue, 02 Aug 2022 19:25:54: 60000000 INFO @ Tue, 02 Aug 2022 19:26:00: 67000000 INFO @ Tue, 02 Aug 2022 19:26:02: 64000000 INFO @ Tue, 02 Aug 2022 19:26:03: 61000000 INFO @ Tue, 02 Aug 2022 19:26:08: 68000000 INFO @ Tue, 02 Aug 2022 19:26:11: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 19:26:11: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 19:26:11: #1 total tags in treatment: 25920958 INFO @ Tue, 02 Aug 2022 19:26:11: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 19:26:11: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 19:26:11: 65000000 INFO @ Tue, 02 Aug 2022 19:26:11: #1 tags after filtering in treatment: 16262471 INFO @ Tue, 02 Aug 2022 19:26:11: #1 Redundant rate of treatment: 0.37 INFO @ Tue, 02 Aug 2022 19:26:11: #1 finished! INFO @ Tue, 02 Aug 2022 19:26:11: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 19:26:11: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 19:26:12: 62000000 INFO @ Tue, 02 Aug 2022 19:26:13: #2 number of paired peaks: 1143 INFO @ Tue, 02 Aug 2022 19:26:13: start model_add_line... INFO @ Tue, 02 Aug 2022 19:26:13: start X-correlation... INFO @ Tue, 02 Aug 2022 19:26:13: end of X-cor INFO @ Tue, 02 Aug 2022 19:26:13: #2 finished! INFO @ Tue, 02 Aug 2022 19:26:13: #2 predicted fragment length is 60 bps INFO @ Tue, 02 Aug 2022 19:26:13: #2 alternative fragment length(s) may be 4,60 bps INFO @ Tue, 02 Aug 2022 19:26:13: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178829/SRX12178829.05_model.r WARNING @ Tue, 02 Aug 2022 19:26:13: #2 Since the d (60) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 19:26:13: #2 You may need to consider one of the other alternative d(s): 4,60 WARNING @ Tue, 02 Aug 2022 19:26:13: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 19:26:13: #3 Call peaks... INFO @ Tue, 02 Aug 2022 19:26:13: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 19:26:20: 66000000 INFO @ Tue, 02 Aug 2022 19:26:21: 63000000 INFO @ Tue, 02 Aug 2022 19:26:27: 67000000 INFO @ Tue, 02 Aug 2022 19:26:29: 64000000 INFO @ Tue, 02 Aug 2022 19:26:35: 68000000 INFO @ Tue, 02 Aug 2022 19:26:37: 65000000 INFO @ Tue, 02 Aug 2022 19:26:39: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 19:26:39: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 19:26:39: #1 total tags in treatment: 25920958 INFO @ Tue, 02 Aug 2022 19:26:39: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 19:26:39: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 19:26:39: #1 tags after filtering in treatment: 16262471 INFO @ Tue, 02 Aug 2022 19:26:39: #1 Redundant rate of treatment: 0.37 INFO @ Tue, 02 Aug 2022 19:26:39: #1 finished! INFO @ Tue, 02 Aug 2022 19:26:39: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 19:26:39: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 19:26:41: #2 number of paired peaks: 1143 INFO @ Tue, 02 Aug 2022 19:26:41: start model_add_line... INFO @ Tue, 02 Aug 2022 19:26:41: start X-correlation... INFO @ Tue, 02 Aug 2022 19:26:41: end of X-cor INFO @ Tue, 02 Aug 2022 19:26:41: #2 finished! INFO @ Tue, 02 Aug 2022 19:26:41: #2 predicted fragment length is 60 bps INFO @ Tue, 02 Aug 2022 19:26:41: #2 alternative fragment length(s) may be 4,60 bps INFO @ Tue, 02 Aug 2022 19:26:41: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178829/SRX12178829.10_model.r WARNING @ Tue, 02 Aug 2022 19:26:41: #2 Since the d (60) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 19:26:41: #2 You may need to consider one of the other alternative d(s): 4,60 WARNING @ Tue, 02 Aug 2022 19:26:41: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 19:26:41: #3 Call peaks... INFO @ Tue, 02 Aug 2022 19:26:41: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 19:26:45: 66000000 INFO @ Tue, 02 Aug 2022 19:26:52: 67000000 INFO @ Tue, 02 Aug 2022 19:26:56: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 19:27:00: 68000000 INFO @ Tue, 02 Aug 2022 19:27:03: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 19:27:03: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 19:27:03: #1 total tags in treatment: 25920958 INFO @ Tue, 02 Aug 2022 19:27:03: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 19:27:03: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 19:27:04: #1 tags after filtering in treatment: 16262471 INFO @ Tue, 02 Aug 2022 19:27:04: #1 Redundant rate of treatment: 0.37 INFO @ Tue, 02 Aug 2022 19:27:04: #1 finished! INFO @ Tue, 02 Aug 2022 19:27:04: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 19:27:04: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 19:27:05: #2 number of paired peaks: 1143 INFO @ Tue, 02 Aug 2022 19:27:05: start model_add_line... INFO @ Tue, 02 Aug 2022 19:27:06: start X-correlation... INFO @ Tue, 02 Aug 2022 19:27:06: end of X-cor INFO @ Tue, 02 Aug 2022 19:27:06: #2 finished! INFO @ Tue, 02 Aug 2022 19:27:06: #2 predicted fragment length is 60 bps INFO @ Tue, 02 Aug 2022 19:27:06: #2 alternative fragment length(s) may be 4,60 bps INFO @ Tue, 02 Aug 2022 19:27:06: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178829/SRX12178829.20_model.r WARNING @ Tue, 02 Aug 2022 19:27:06: #2 Since the d (60) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 19:27:06: #2 You may need to consider one of the other alternative d(s): 4,60 WARNING @ Tue, 02 Aug 2022 19:27:06: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 19:27:06: #3 Call peaks... INFO @ Tue, 02 Aug 2022 19:27:06: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 19:27:19: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178829/SRX12178829.05_peaks.xls INFO @ Tue, 02 Aug 2022 19:27:19: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178829/SRX12178829.05_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 19:27:20: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178829/SRX12178829.05_summits.bed INFO @ Tue, 02 Aug 2022 19:27:20: Done! pass1 - making usageList (15 chroms): 4 millis pass2 - checking and writing primary data (20429 records, 4 fields): 27 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 19:27:26: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 19:27:50: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 19:27:51: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178829/SRX12178829.10_peaks.xls INFO @ Tue, 02 Aug 2022 19:27:51: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178829/SRX12178829.10_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 19:27:51: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178829/SRX12178829.10_summits.bed INFO @ Tue, 02 Aug 2022 19:27:51: Done! pass1 - making usageList (14 chroms): 3 millis pass2 - checking and writing primary data (9713 records, 4 fields): 21 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 19:28:16: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178829/SRX12178829.20_peaks.xls INFO @ Tue, 02 Aug 2022 19:28:16: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178829/SRX12178829.20_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 19:28:16: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178829/SRX12178829.20_summits.bed INFO @ Tue, 02 Aug 2022 19:28:16: Done! pass1 - making usageList (12 chroms): 1 millis pass2 - checking and writing primary data (1083 records, 4 fields): 5 millis CompletedMACS2peakCalling