Job ID = 16440146 SRX = SRX12178824 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2022-08-02T08:21:02 prefetch.2.10.7: 1) Downloading 'SRR15888090'... 2022-08-02T08:21:02 prefetch.2.10.7: Downloading via HTTPS... 2022-08-02T08:22:44 prefetch.2.10.7: HTTPS download succeed 2022-08-02T08:22:44 prefetch.2.10.7: 1) 'SRR15888090' was downloaded successfully 2022-08-02T08:22:44 prefetch.2.10.7: 'SRR15888090' has 0 unresolved dependencies Read 31501853 spots for SRR15888090/SRR15888090.sra Written 31501853 spots for SRR15888090/SRR15888090.sra fastq に変換しました。 bowtie でマッピング中... Your job 16440944 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:42:20 31501853 reads; of these: 31501853 (100.00%) were paired; of these: 9458079 (30.02%) aligned concordantly 0 times 19208297 (60.98%) aligned concordantly exactly 1 time 2835477 (9.00%) aligned concordantly >1 times ---- 9458079 pairs aligned concordantly 0 times; of these: 4171965 (44.11%) aligned discordantly 1 time ---- 5286114 pairs aligned 0 times concordantly or discordantly; of these: 10572228 mates make up the pairs; of these: 5808826 (54.94%) aligned 0 times 3537876 (33.46%) aligned exactly 1 time 1225526 (11.59%) aligned >1 times 90.78% overall alignment rate Time searching: 00:42:20 Overall time: 00:42:20 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 24 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 3703907 / 26144873 = 0.1417 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 18:26:10: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178824/SRX12178824.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178824/SRX12178824.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178824/SRX12178824.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178824/SRX12178824.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 18:26:10: #1 read tag files... INFO @ Tue, 02 Aug 2022 18:26:10: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 18:26:18: 1000000 INFO @ Tue, 02 Aug 2022 18:26:26: 2000000 INFO @ Tue, 02 Aug 2022 18:26:35: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 18:26:38: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178824/SRX12178824.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178824/SRX12178824.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178824/SRX12178824.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178824/SRX12178824.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 18:26:38: #1 read tag files... INFO @ Tue, 02 Aug 2022 18:26:38: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 18:26:44: 4000000 INFO @ Tue, 02 Aug 2022 18:26:45: 1000000 INFO @ Tue, 02 Aug 2022 18:26:51: 2000000 INFO @ Tue, 02 Aug 2022 18:26:52: 5000000 INFO @ Tue, 02 Aug 2022 18:26:57: 3000000 INFO @ Tue, 02 Aug 2022 18:27:00: 6000000 INFO @ Tue, 02 Aug 2022 18:27:04: 4000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 18:27:08: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178824/SRX12178824.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178824/SRX12178824.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178824/SRX12178824.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178824/SRX12178824.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 18:27:08: #1 read tag files... INFO @ Tue, 02 Aug 2022 18:27:08: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 18:27:09: 7000000 INFO @ Tue, 02 Aug 2022 18:27:11: 5000000 INFO @ Tue, 02 Aug 2022 18:27:17: 6000000 INFO @ Tue, 02 Aug 2022 18:27:17: 1000000 INFO @ Tue, 02 Aug 2022 18:27:17: 8000000 INFO @ Tue, 02 Aug 2022 18:27:24: 7000000 INFO @ Tue, 02 Aug 2022 18:27:26: 2000000 INFO @ Tue, 02 Aug 2022 18:27:26: 9000000 INFO @ Tue, 02 Aug 2022 18:27:31: 8000000 INFO @ Tue, 02 Aug 2022 18:27:35: 10000000 INFO @ Tue, 02 Aug 2022 18:27:35: 3000000 INFO @ Tue, 02 Aug 2022 18:27:37: 9000000 INFO @ Tue, 02 Aug 2022 18:27:44: 11000000 INFO @ Tue, 02 Aug 2022 18:27:44: 10000000 INFO @ Tue, 02 Aug 2022 18:27:44: 4000000 INFO @ Tue, 02 Aug 2022 18:27:51: 11000000 INFO @ Tue, 02 Aug 2022 18:27:52: 12000000 INFO @ Tue, 02 Aug 2022 18:27:53: 5000000 INFO @ Tue, 02 Aug 2022 18:27:57: 12000000 INFO @ Tue, 02 Aug 2022 18:28:02: 6000000 INFO @ Tue, 02 Aug 2022 18:28:03: 13000000 INFO @ Tue, 02 Aug 2022 18:28:04: 13000000 INFO @ Tue, 02 Aug 2022 18:28:10: 14000000 INFO @ Tue, 02 Aug 2022 18:28:11: 7000000 INFO @ Tue, 02 Aug 2022 18:28:11: 14000000 INFO @ Tue, 02 Aug 2022 18:28:17: 15000000 INFO @ Tue, 02 Aug 2022 18:28:19: 8000000 INFO @ Tue, 02 Aug 2022 18:28:20: 15000000 INFO @ Tue, 02 Aug 2022 18:28:23: 16000000 INFO @ Tue, 02 Aug 2022 18:28:28: 9000000 INFO @ Tue, 02 Aug 2022 18:28:28: 16000000 INFO @ Tue, 02 Aug 2022 18:28:30: 17000000 INFO @ Tue, 02 Aug 2022 18:28:37: 17000000 INFO @ Tue, 02 Aug 2022 18:28:37: 10000000 INFO @ Tue, 02 Aug 2022 18:28:37: 18000000 INFO @ Tue, 02 Aug 2022 18:28:44: 19000000 INFO @ Tue, 02 Aug 2022 18:28:46: 18000000 INFO @ Tue, 02 Aug 2022 18:28:46: 11000000 INFO @ Tue, 02 Aug 2022 18:28:50: 20000000 INFO @ Tue, 02 Aug 2022 18:28:55: 19000000 INFO @ Tue, 02 Aug 2022 18:28:55: 12000000 INFO @ Tue, 02 Aug 2022 18:28:56: 21000000 INFO @ Tue, 02 Aug 2022 18:29:03: 22000000 INFO @ Tue, 02 Aug 2022 18:29:03: 20000000 INFO @ Tue, 02 Aug 2022 18:29:04: 13000000 INFO @ Tue, 02 Aug 2022 18:29:10: 23000000 INFO @ Tue, 02 Aug 2022 18:29:12: 21000000 INFO @ Tue, 02 Aug 2022 18:29:12: 14000000 INFO @ Tue, 02 Aug 2022 18:29:16: 24000000 INFO @ Tue, 02 Aug 2022 18:29:21: 15000000 INFO @ Tue, 02 Aug 2022 18:29:21: 22000000 INFO @ Tue, 02 Aug 2022 18:29:23: 25000000 INFO @ Tue, 02 Aug 2022 18:29:30: 16000000 INFO @ Tue, 02 Aug 2022 18:29:30: 23000000 INFO @ Tue, 02 Aug 2022 18:29:30: 26000000 INFO @ Tue, 02 Aug 2022 18:29:36: 27000000 INFO @ Tue, 02 Aug 2022 18:29:39: 17000000 INFO @ Tue, 02 Aug 2022 18:29:39: 24000000 INFO @ Tue, 02 Aug 2022 18:29:43: 28000000 INFO @ Tue, 02 Aug 2022 18:29:47: 18000000 INFO @ Tue, 02 Aug 2022 18:29:47: 25000000 INFO @ Tue, 02 Aug 2022 18:29:50: 29000000 INFO @ Tue, 02 Aug 2022 18:29:55: 26000000 INFO @ Tue, 02 Aug 2022 18:29:56: 19000000 INFO @ Tue, 02 Aug 2022 18:29:58: 30000000 INFO @ Tue, 02 Aug 2022 18:30:04: 27000000 INFO @ Tue, 02 Aug 2022 18:30:04: 31000000 INFO @ Tue, 02 Aug 2022 18:30:05: 20000000 INFO @ Tue, 02 Aug 2022 18:30:11: 32000000 INFO @ Tue, 02 Aug 2022 18:30:12: 28000000 INFO @ Tue, 02 Aug 2022 18:30:13: 21000000 INFO @ Tue, 02 Aug 2022 18:30:17: 33000000 INFO @ Tue, 02 Aug 2022 18:30:21: 29000000 INFO @ Tue, 02 Aug 2022 18:30:22: 22000000 INFO @ Tue, 02 Aug 2022 18:30:23: 34000000 INFO @ Tue, 02 Aug 2022 18:30:29: 35000000 INFO @ Tue, 02 Aug 2022 18:30:30: 30000000 INFO @ Tue, 02 Aug 2022 18:30:30: 23000000 INFO @ Tue, 02 Aug 2022 18:30:35: 36000000 INFO @ Tue, 02 Aug 2022 18:30:38: 31000000 INFO @ Tue, 02 Aug 2022 18:30:39: 24000000 INFO @ Tue, 02 Aug 2022 18:30:41: 37000000 INFO @ Tue, 02 Aug 2022 18:30:47: 32000000 INFO @ Tue, 02 Aug 2022 18:30:47: 25000000 INFO @ Tue, 02 Aug 2022 18:30:48: 38000000 INFO @ Tue, 02 Aug 2022 18:30:54: 39000000 INFO @ Tue, 02 Aug 2022 18:30:55: 33000000 INFO @ Tue, 02 Aug 2022 18:30:56: 26000000 INFO @ Tue, 02 Aug 2022 18:31:00: 40000000 INFO @ Tue, 02 Aug 2022 18:31:04: 34000000 INFO @ Tue, 02 Aug 2022 18:31:04: 27000000 INFO @ Tue, 02 Aug 2022 18:31:06: 41000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 02 Aug 2022 18:31:13: 35000000 INFO @ Tue, 02 Aug 2022 18:31:13: 42000000 INFO @ Tue, 02 Aug 2022 18:31:13: 28000000 INFO @ Tue, 02 Aug 2022 18:31:19: 43000000 INFO @ Tue, 02 Aug 2022 18:31:21: 36000000 INFO @ Tue, 02 Aug 2022 18:31:22: 29000000 INFO @ Tue, 02 Aug 2022 18:31:25: 44000000 INFO @ Tue, 02 Aug 2022 18:31:30: 37000000 INFO @ Tue, 02 Aug 2022 18:31:30: 30000000 INFO @ Tue, 02 Aug 2022 18:31:31: 45000000 INFO @ Tue, 02 Aug 2022 18:31:38: 46000000 INFO @ Tue, 02 Aug 2022 18:31:38: 38000000 INFO @ Tue, 02 Aug 2022 18:31:39: 31000000 INFO @ Tue, 02 Aug 2022 18:31:44: 47000000 INFO @ Tue, 02 Aug 2022 18:31:47: 39000000 INFO @ Tue, 02 Aug 2022 18:31:47: 32000000 INFO @ Tue, 02 Aug 2022 18:31:50: 48000000 INFO @ Tue, 02 Aug 2022 18:31:56: 40000000 INFO @ Tue, 02 Aug 2022 18:31:56: 33000000 INFO @ Tue, 02 Aug 2022 18:31:56: 49000000 INFO @ Tue, 02 Aug 2022 18:32:01: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 18:32:01: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 18:32:01: #1 total tags in treatment: 18698320 INFO @ Tue, 02 Aug 2022 18:32:01: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 18:32:01: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 18:32:02: #1 tags after filtering in treatment: 12056112 INFO @ Tue, 02 Aug 2022 18:32:02: #1 Redundant rate of treatment: 0.36 INFO @ Tue, 02 Aug 2022 18:32:02: #1 finished! INFO @ Tue, 02 Aug 2022 18:32:02: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 18:32:02: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 18:32:03: #2 number of paired peaks: 2486 INFO @ Tue, 02 Aug 2022 18:32:03: start model_add_line... INFO @ Tue, 02 Aug 2022 18:32:03: start X-correlation... INFO @ Tue, 02 Aug 2022 18:32:03: end of X-cor INFO @ Tue, 02 Aug 2022 18:32:03: #2 finished! INFO @ Tue, 02 Aug 2022 18:32:03: #2 predicted fragment length is 65 bps INFO @ Tue, 02 Aug 2022 18:32:03: #2 alternative fragment length(s) may be 4,65 bps INFO @ Tue, 02 Aug 2022 18:32:03: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178824/SRX12178824.10_model.r WARNING @ Tue, 02 Aug 2022 18:32:03: #2 Since the d (65) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 18:32:03: #2 You may need to consider one of the other alternative d(s): 4,65 WARNING @ Tue, 02 Aug 2022 18:32:03: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 18:32:03: #3 Call peaks... INFO @ Tue, 02 Aug 2022 18:32:03: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 18:32:04: 41000000 INFO @ Tue, 02 Aug 2022 18:32:04: 34000000 INFO @ Tue, 02 Aug 2022 18:32:12: 42000000 INFO @ Tue, 02 Aug 2022 18:32:13: 35000000 INFO @ Tue, 02 Aug 2022 18:32:21: 43000000 INFO @ Tue, 02 Aug 2022 18:32:21: 36000000 INFO @ Tue, 02 Aug 2022 18:32:26: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 18:32:29: 44000000 INFO @ Tue, 02 Aug 2022 18:32:29: 37000000 BigWig に変換しました。 INFO @ Tue, 02 Aug 2022 18:32:37: 45000000 INFO @ Tue, 02 Aug 2022 18:32:38: 38000000 INFO @ Tue, 02 Aug 2022 18:32:38: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178824/SRX12178824.10_peaks.xls INFO @ Tue, 02 Aug 2022 18:32:38: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178824/SRX12178824.10_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 18:32:38: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178824/SRX12178824.10_summits.bed INFO @ Tue, 02 Aug 2022 18:32:38: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (9983 records, 4 fields): 47 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 18:32:46: 46000000 INFO @ Tue, 02 Aug 2022 18:32:46: 39000000 INFO @ Tue, 02 Aug 2022 18:32:54: 47000000 INFO @ Tue, 02 Aug 2022 18:32:54: 40000000 INFO @ Tue, 02 Aug 2022 18:33:02: 48000000 INFO @ Tue, 02 Aug 2022 18:33:02: 41000000 INFO @ Tue, 02 Aug 2022 18:33:10: 49000000 INFO @ Tue, 02 Aug 2022 18:33:11: 42000000 INFO @ Tue, 02 Aug 2022 18:33:17: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 18:33:17: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 18:33:17: #1 total tags in treatment: 18698320 INFO @ Tue, 02 Aug 2022 18:33:17: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 18:33:17: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 18:33:18: #1 tags after filtering in treatment: 12056112 INFO @ Tue, 02 Aug 2022 18:33:18: #1 Redundant rate of treatment: 0.36 INFO @ Tue, 02 Aug 2022 18:33:18: #1 finished! INFO @ Tue, 02 Aug 2022 18:33:18: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 18:33:18: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 18:33:19: #2 number of paired peaks: 2486 INFO @ Tue, 02 Aug 2022 18:33:19: start model_add_line... INFO @ Tue, 02 Aug 2022 18:33:19: start X-correlation... INFO @ Tue, 02 Aug 2022 18:33:19: end of X-cor INFO @ Tue, 02 Aug 2022 18:33:19: #2 finished! INFO @ Tue, 02 Aug 2022 18:33:19: #2 predicted fragment length is 65 bps INFO @ Tue, 02 Aug 2022 18:33:19: #2 alternative fragment length(s) may be 4,65 bps INFO @ Tue, 02 Aug 2022 18:33:19: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178824/SRX12178824.05_model.r WARNING @ Tue, 02 Aug 2022 18:33:19: #2 Since the d (65) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 18:33:19: #2 You may need to consider one of the other alternative d(s): 4,65 WARNING @ Tue, 02 Aug 2022 18:33:19: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 18:33:19: #3 Call peaks... INFO @ Tue, 02 Aug 2022 18:33:19: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 18:33:20: 43000000 INFO @ Tue, 02 Aug 2022 18:33:28: 44000000 INFO @ Tue, 02 Aug 2022 18:33:36: 45000000 INFO @ Tue, 02 Aug 2022 18:33:44: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 18:33:44: 46000000 INFO @ Tue, 02 Aug 2022 18:33:53: 47000000 INFO @ Tue, 02 Aug 2022 18:33:58: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178824/SRX12178824.05_peaks.xls INFO @ Tue, 02 Aug 2022 18:33:58: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178824/SRX12178824.05_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 18:33:58: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178824/SRX12178824.05_summits.bed INFO @ Tue, 02 Aug 2022 18:33:58: Done! pass1 - making usageList (15 chroms): 3 millis pass2 - checking and writing primary data (19907 records, 4 fields): 62 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 18:34:01: 48000000 INFO @ Tue, 02 Aug 2022 18:34:08: 49000000 INFO @ Tue, 02 Aug 2022 18:34:15: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 18:34:15: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 18:34:15: #1 total tags in treatment: 18698320 INFO @ Tue, 02 Aug 2022 18:34:15: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 18:34:15: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 18:34:15: #1 tags after filtering in treatment: 12056112 INFO @ Tue, 02 Aug 2022 18:34:15: #1 Redundant rate of treatment: 0.36 INFO @ Tue, 02 Aug 2022 18:34:15: #1 finished! INFO @ Tue, 02 Aug 2022 18:34:15: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 18:34:15: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 18:34:16: #2 number of paired peaks: 2486 INFO @ Tue, 02 Aug 2022 18:34:16: start model_add_line... INFO @ Tue, 02 Aug 2022 18:34:16: start X-correlation... INFO @ Tue, 02 Aug 2022 18:34:16: end of X-cor INFO @ Tue, 02 Aug 2022 18:34:16: #2 finished! INFO @ Tue, 02 Aug 2022 18:34:16: #2 predicted fragment length is 65 bps INFO @ Tue, 02 Aug 2022 18:34:16: #2 alternative fragment length(s) may be 4,65 bps INFO @ Tue, 02 Aug 2022 18:34:16: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178824/SRX12178824.20_model.r WARNING @ Tue, 02 Aug 2022 18:34:17: #2 Since the d (65) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 18:34:17: #2 You may need to consider one of the other alternative d(s): 4,65 WARNING @ Tue, 02 Aug 2022 18:34:17: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 18:34:17: #3 Call peaks... INFO @ Tue, 02 Aug 2022 18:34:17: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 18:34:40: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 18:34:53: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178824/SRX12178824.20_peaks.xls INFO @ Tue, 02 Aug 2022 18:34:53: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178824/SRX12178824.20_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 18:34:54: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178824/SRX12178824.20_summits.bed INFO @ Tue, 02 Aug 2022 18:34:54: Done! pass1 - making usageList (13 chroms): 1 millis pass2 - checking and writing primary data (1423 records, 4 fields): 20 millis CompletedMACS2peakCalling