Job ID = 16440129 SRX = SRX12178819 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2022-08-02T08:18:25 prefetch.2.10.7: 1) Downloading 'SRR15888095'... 2022-08-02T08:18:25 prefetch.2.10.7: Downloading via HTTPS... 2022-08-02T08:20:36 prefetch.2.10.7: HTTPS download succeed 2022-08-02T08:20:36 prefetch.2.10.7: 1) 'SRR15888095' was downloaded successfully 2022-08-02T08:20:36 prefetch.2.10.7: 'SRR15888095' has 0 unresolved dependencies Read 46818460 spots for SRR15888095/SRR15888095.sra Written 46818460 spots for SRR15888095/SRR15888095.sra fastq に変換しました。 bowtie でマッピング中... Your job 16440934 ("srTdm6") has been submitted Time loading reference: 00:00:01 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:42:49 46818460 reads; of these: 46818460 (100.00%) were paired; of these: 13848281 (29.58%) aligned concordantly 0 times 28930257 (61.79%) aligned concordantly exactly 1 time 4039922 (8.63%) aligned concordantly >1 times ---- 13848281 pairs aligned concordantly 0 times; of these: 5891471 (42.54%) aligned discordantly 1 time ---- 7956810 pairs aligned 0 times concordantly or discordantly; of these: 15913620 mates make up the pairs; of these: 9222479 (57.95%) aligned 0 times 4951626 (31.12%) aligned exactly 1 time 1739515 (10.93%) aligned >1 times 90.15% overall alignment rate Time searching: 00:42:50 Overall time: 00:42:50 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 36 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 6202584 / 38767105 = 0.1600 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 18:25:48: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178819/SRX12178819.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178819/SRX12178819.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178819/SRX12178819.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178819/SRX12178819.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 18:25:48: #1 read tag files... INFO @ Tue, 02 Aug 2022 18:25:48: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 18:25:53: 1000000 INFO @ Tue, 02 Aug 2022 18:25:57: 2000000 INFO @ Tue, 02 Aug 2022 18:26:02: 3000000 INFO @ Tue, 02 Aug 2022 18:26:07: 4000000 INFO @ Tue, 02 Aug 2022 18:26:11: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 18:26:16: 6000000 INFO @ Tue, 02 Aug 2022 18:26:17: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178819/SRX12178819.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178819/SRX12178819.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178819/SRX12178819.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178819/SRX12178819.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 18:26:17: #1 read tag files... INFO @ Tue, 02 Aug 2022 18:26:17: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 18:26:22: 7000000 INFO @ Tue, 02 Aug 2022 18:26:23: 1000000 INFO @ Tue, 02 Aug 2022 18:26:27: 8000000 INFO @ Tue, 02 Aug 2022 18:26:30: 2000000 INFO @ Tue, 02 Aug 2022 18:26:33: 9000000 INFO @ Tue, 02 Aug 2022 18:26:36: 3000000 INFO @ Tue, 02 Aug 2022 18:26:39: 10000000 INFO @ Tue, 02 Aug 2022 18:26:42: 4000000 INFO @ Tue, 02 Aug 2022 18:26:44: 11000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 18:26:47: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178819/SRX12178819.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178819/SRX12178819.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178819/SRX12178819.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178819/SRX12178819.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 18:26:47: #1 read tag files... INFO @ Tue, 02 Aug 2022 18:26:47: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 18:26:49: 5000000 INFO @ Tue, 02 Aug 2022 18:26:50: 12000000 INFO @ Tue, 02 Aug 2022 18:26:53: 1000000 INFO @ Tue, 02 Aug 2022 18:26:55: 6000000 INFO @ Tue, 02 Aug 2022 18:26:55: 13000000 INFO @ Tue, 02 Aug 2022 18:26:58: 2000000 INFO @ Tue, 02 Aug 2022 18:27:01: 14000000 INFO @ Tue, 02 Aug 2022 18:27:01: 7000000 INFO @ Tue, 02 Aug 2022 18:27:04: 3000000 INFO @ Tue, 02 Aug 2022 18:27:07: 15000000 INFO @ Tue, 02 Aug 2022 18:27:08: 8000000 INFO @ Tue, 02 Aug 2022 18:27:09: 4000000 INFO @ Tue, 02 Aug 2022 18:27:12: 16000000 INFO @ Tue, 02 Aug 2022 18:27:14: 9000000 INFO @ Tue, 02 Aug 2022 18:27:15: 5000000 INFO @ Tue, 02 Aug 2022 18:27:18: 17000000 INFO @ Tue, 02 Aug 2022 18:27:20: 6000000 INFO @ Tue, 02 Aug 2022 18:27:20: 10000000 INFO @ Tue, 02 Aug 2022 18:27:23: 18000000 INFO @ Tue, 02 Aug 2022 18:27:26: 7000000 INFO @ Tue, 02 Aug 2022 18:27:27: 11000000 INFO @ Tue, 02 Aug 2022 18:27:29: 19000000 INFO @ Tue, 02 Aug 2022 18:27:31: 8000000 INFO @ Tue, 02 Aug 2022 18:27:33: 12000000 INFO @ Tue, 02 Aug 2022 18:27:35: 20000000 INFO @ Tue, 02 Aug 2022 18:27:37: 9000000 INFO @ Tue, 02 Aug 2022 18:27:39: 13000000 INFO @ Tue, 02 Aug 2022 18:27:40: 21000000 INFO @ Tue, 02 Aug 2022 18:27:42: 10000000 INFO @ Tue, 02 Aug 2022 18:27:46: 14000000 INFO @ Tue, 02 Aug 2022 18:27:46: 22000000 INFO @ Tue, 02 Aug 2022 18:27:48: 11000000 INFO @ Tue, 02 Aug 2022 18:27:52: 23000000 INFO @ Tue, 02 Aug 2022 18:27:52: 15000000 INFO @ Tue, 02 Aug 2022 18:27:53: 12000000 INFO @ Tue, 02 Aug 2022 18:27:57: 24000000 INFO @ Tue, 02 Aug 2022 18:27:58: 16000000 INFO @ Tue, 02 Aug 2022 18:27:59: 13000000 INFO @ Tue, 02 Aug 2022 18:28:03: 25000000 INFO @ Tue, 02 Aug 2022 18:28:04: 14000000 INFO @ Tue, 02 Aug 2022 18:28:05: 17000000 INFO @ Tue, 02 Aug 2022 18:28:08: 26000000 INFO @ Tue, 02 Aug 2022 18:28:10: 15000000 INFO @ Tue, 02 Aug 2022 18:28:11: 18000000 INFO @ Tue, 02 Aug 2022 18:28:14: 27000000 INFO @ Tue, 02 Aug 2022 18:28:15: 16000000 INFO @ Tue, 02 Aug 2022 18:28:17: 19000000 INFO @ Tue, 02 Aug 2022 18:28:19: 28000000 INFO @ Tue, 02 Aug 2022 18:28:21: 17000000 INFO @ Tue, 02 Aug 2022 18:28:23: 20000000 INFO @ Tue, 02 Aug 2022 18:28:25: 29000000 INFO @ Tue, 02 Aug 2022 18:28:26: 18000000 INFO @ Tue, 02 Aug 2022 18:28:30: 21000000 INFO @ Tue, 02 Aug 2022 18:28:30: 30000000 INFO @ Tue, 02 Aug 2022 18:28:32: 19000000 INFO @ Tue, 02 Aug 2022 18:28:36: 31000000 INFO @ Tue, 02 Aug 2022 18:28:36: 22000000 INFO @ Tue, 02 Aug 2022 18:28:37: 20000000 INFO @ Tue, 02 Aug 2022 18:28:41: 32000000 INFO @ Tue, 02 Aug 2022 18:28:42: 23000000 INFO @ Tue, 02 Aug 2022 18:28:43: 21000000 INFO @ Tue, 02 Aug 2022 18:28:47: 33000000 INFO @ Tue, 02 Aug 2022 18:28:48: 22000000 INFO @ Tue, 02 Aug 2022 18:28:49: 24000000 INFO @ Tue, 02 Aug 2022 18:28:52: 34000000 INFO @ Tue, 02 Aug 2022 18:28:54: 23000000 INFO @ Tue, 02 Aug 2022 18:28:55: 25000000 INFO @ Tue, 02 Aug 2022 18:28:58: 35000000 INFO @ Tue, 02 Aug 2022 18:28:59: 24000000 INFO @ Tue, 02 Aug 2022 18:29:01: 26000000 INFO @ Tue, 02 Aug 2022 18:29:03: 36000000 INFO @ Tue, 02 Aug 2022 18:29:05: 25000000 INFO @ Tue, 02 Aug 2022 18:29:08: 27000000 INFO @ Tue, 02 Aug 2022 18:29:09: 37000000 INFO @ Tue, 02 Aug 2022 18:29:10: 26000000 INFO @ Tue, 02 Aug 2022 18:29:14: 28000000 INFO @ Tue, 02 Aug 2022 18:29:14: 38000000 INFO @ Tue, 02 Aug 2022 18:29:16: 27000000 INFO @ Tue, 02 Aug 2022 18:29:20: 39000000 INFO @ Tue, 02 Aug 2022 18:29:20: 29000000 INFO @ Tue, 02 Aug 2022 18:29:21: 28000000 INFO @ Tue, 02 Aug 2022 18:29:25: 40000000 INFO @ Tue, 02 Aug 2022 18:29:27: 29000000 INFO @ Tue, 02 Aug 2022 18:29:27: 30000000 INFO @ Tue, 02 Aug 2022 18:29:31: 41000000 INFO @ Tue, 02 Aug 2022 18:29:32: 30000000 INFO @ Tue, 02 Aug 2022 18:29:33: 31000000 INFO @ Tue, 02 Aug 2022 18:29:36: 42000000 INFO @ Tue, 02 Aug 2022 18:29:38: 31000000 INFO @ Tue, 02 Aug 2022 18:29:39: 32000000 INFO @ Tue, 02 Aug 2022 18:29:41: 43000000 INFO @ Tue, 02 Aug 2022 18:29:43: 32000000 INFO @ Tue, 02 Aug 2022 18:29:45: 33000000 INFO @ Tue, 02 Aug 2022 18:29:47: 44000000 INFO @ Tue, 02 Aug 2022 18:29:49: 33000000 INFO @ Tue, 02 Aug 2022 18:29:52: 34000000 INFO @ Tue, 02 Aug 2022 18:29:52: 45000000 INFO @ Tue, 02 Aug 2022 18:29:54: 34000000 INFO @ Tue, 02 Aug 2022 18:29:58: 46000000 INFO @ Tue, 02 Aug 2022 18:29:58: 35000000 INFO @ Tue, 02 Aug 2022 18:30:00: 35000000 INFO @ Tue, 02 Aug 2022 18:30:03: 47000000 INFO @ Tue, 02 Aug 2022 18:30:04: 36000000 INFO @ Tue, 02 Aug 2022 18:30:06: 36000000 INFO @ Tue, 02 Aug 2022 18:30:08: 48000000 INFO @ Tue, 02 Aug 2022 18:30:10: 37000000 INFO @ Tue, 02 Aug 2022 18:30:12: 37000000 INFO @ Tue, 02 Aug 2022 18:30:14: 49000000 INFO @ Tue, 02 Aug 2022 18:30:17: 38000000 INFO @ Tue, 02 Aug 2022 18:30:17: 38000000 INFO @ Tue, 02 Aug 2022 18:30:19: 50000000 INFO @ Tue, 02 Aug 2022 18:30:23: 39000000 INFO @ Tue, 02 Aug 2022 18:30:24: 39000000 INFO @ Tue, 02 Aug 2022 18:30:24: 51000000 INFO @ Tue, 02 Aug 2022 18:30:29: 40000000 INFO @ Tue, 02 Aug 2022 18:30:30: 52000000 INFO @ Tue, 02 Aug 2022 18:30:30: 40000000 INFO @ Tue, 02 Aug 2022 18:30:35: 53000000 INFO @ Tue, 02 Aug 2022 18:30:36: 41000000 INFO @ Tue, 02 Aug 2022 18:30:36: 41000000 INFO @ Tue, 02 Aug 2022 18:30:40: 54000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 02 Aug 2022 18:30:42: 42000000 INFO @ Tue, 02 Aug 2022 18:30:43: 42000000 INFO @ Tue, 02 Aug 2022 18:30:46: 55000000 INFO @ Tue, 02 Aug 2022 18:30:49: 43000000 INFO @ Tue, 02 Aug 2022 18:30:49: 43000000 INFO @ Tue, 02 Aug 2022 18:30:51: 56000000 INFO @ Tue, 02 Aug 2022 18:30:55: 44000000 INFO @ Tue, 02 Aug 2022 18:30:56: 44000000 INFO @ Tue, 02 Aug 2022 18:30:57: 57000000 INFO @ Tue, 02 Aug 2022 18:31:01: 45000000 INFO @ Tue, 02 Aug 2022 18:31:02: 58000000 INFO @ Tue, 02 Aug 2022 18:31:02: 45000000 INFO @ Tue, 02 Aug 2022 18:31:07: 59000000 INFO @ Tue, 02 Aug 2022 18:31:08: 46000000 INFO @ Tue, 02 Aug 2022 18:31:08: 46000000 INFO @ Tue, 02 Aug 2022 18:31:13: 60000000 INFO @ Tue, 02 Aug 2022 18:31:14: 47000000 INFO @ Tue, 02 Aug 2022 18:31:15: 47000000 INFO @ Tue, 02 Aug 2022 18:31:18: 61000000 INFO @ Tue, 02 Aug 2022 18:31:21: 48000000 INFO @ Tue, 02 Aug 2022 18:31:21: 48000000 INFO @ Tue, 02 Aug 2022 18:31:24: 62000000 INFO @ Tue, 02 Aug 2022 18:31:27: 49000000 INFO @ Tue, 02 Aug 2022 18:31:28: 49000000 INFO @ Tue, 02 Aug 2022 18:31:29: 63000000 INFO @ Tue, 02 Aug 2022 18:31:34: 50000000 INFO @ Tue, 02 Aug 2022 18:31:34: 50000000 INFO @ Tue, 02 Aug 2022 18:31:34: 64000000 INFO @ Tue, 02 Aug 2022 18:31:40: 65000000 INFO @ Tue, 02 Aug 2022 18:31:40: 51000000 INFO @ Tue, 02 Aug 2022 18:31:41: 51000000 INFO @ Tue, 02 Aug 2022 18:31:45: 66000000 INFO @ Tue, 02 Aug 2022 18:31:47: 52000000 INFO @ Tue, 02 Aug 2022 18:31:47: 52000000 INFO @ Tue, 02 Aug 2022 18:31:51: 67000000 BigWig に変換しました。 INFO @ Tue, 02 Aug 2022 18:31:53: 53000000 INFO @ Tue, 02 Aug 2022 18:31:54: 53000000 INFO @ Tue, 02 Aug 2022 18:31:56: 68000000 INFO @ Tue, 02 Aug 2022 18:32:00: 54000000 INFO @ Tue, 02 Aug 2022 18:32:00: 54000000 INFO @ Tue, 02 Aug 2022 18:32:01: 69000000 INFO @ Tue, 02 Aug 2022 18:32:07: 55000000 INFO @ Tue, 02 Aug 2022 18:32:07: 70000000 INFO @ Tue, 02 Aug 2022 18:32:07: 55000000 INFO @ Tue, 02 Aug 2022 18:32:12: 71000000 INFO @ Tue, 02 Aug 2022 18:32:13: 56000000 INFO @ Tue, 02 Aug 2022 18:32:14: 56000000 INFO @ Tue, 02 Aug 2022 18:32:18: 72000000 INFO @ Tue, 02 Aug 2022 18:32:18: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 18:32:18: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 18:32:18: #1 total tags in treatment: 27324138 INFO @ Tue, 02 Aug 2022 18:32:18: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 18:32:18: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 18:32:19: #1 tags after filtering in treatment: 16124847 INFO @ Tue, 02 Aug 2022 18:32:19: #1 Redundant rate of treatment: 0.41 INFO @ Tue, 02 Aug 2022 18:32:19: #1 finished! INFO @ Tue, 02 Aug 2022 18:32:19: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 18:32:19: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 18:32:19: 57000000 INFO @ Tue, 02 Aug 2022 18:32:20: #2 number of paired peaks: 1539 INFO @ Tue, 02 Aug 2022 18:32:20: start model_add_line... INFO @ Tue, 02 Aug 2022 18:32:20: start X-correlation... INFO @ Tue, 02 Aug 2022 18:32:20: end of X-cor INFO @ Tue, 02 Aug 2022 18:32:20: #2 finished! INFO @ Tue, 02 Aug 2022 18:32:20: #2 predicted fragment length is 77 bps INFO @ Tue, 02 Aug 2022 18:32:20: #2 alternative fragment length(s) may be 4,77 bps INFO @ Tue, 02 Aug 2022 18:32:20: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178819/SRX12178819.05_model.r WARNING @ Tue, 02 Aug 2022 18:32:20: #2 Since the d (77) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 18:32:20: #2 You may need to consider one of the other alternative d(s): 4,77 WARNING @ Tue, 02 Aug 2022 18:32:20: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 18:32:20: #3 Call peaks... INFO @ Tue, 02 Aug 2022 18:32:20: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 18:32:20: 57000000 INFO @ Tue, 02 Aug 2022 18:32:26: 58000000 INFO @ Tue, 02 Aug 2022 18:32:26: 58000000 INFO @ Tue, 02 Aug 2022 18:32:32: 59000000 INFO @ Tue, 02 Aug 2022 18:32:33: 59000000 INFO @ Tue, 02 Aug 2022 18:32:38: 60000000 INFO @ Tue, 02 Aug 2022 18:32:39: 60000000 INFO @ Tue, 02 Aug 2022 18:32:45: 61000000 INFO @ Tue, 02 Aug 2022 18:32:45: 61000000 INFO @ Tue, 02 Aug 2022 18:32:50: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 18:32:51: 62000000 INFO @ Tue, 02 Aug 2022 18:32:52: 62000000 INFO @ Tue, 02 Aug 2022 18:32:58: 63000000 INFO @ Tue, 02 Aug 2022 18:32:58: 63000000 INFO @ Tue, 02 Aug 2022 18:33:04: 64000000 INFO @ Tue, 02 Aug 2022 18:33:05: 64000000 INFO @ Tue, 02 Aug 2022 18:33:06: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178819/SRX12178819.05_peaks.xls INFO @ Tue, 02 Aug 2022 18:33:06: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178819/SRX12178819.05_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 18:33:06: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178819/SRX12178819.05_summits.bed INFO @ Tue, 02 Aug 2022 18:33:06: Done! pass1 - making usageList (15 chroms): 3 millis pass2 - checking and writing primary data (21186 records, 4 fields): 88 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 18:33:10: 65000000 INFO @ Tue, 02 Aug 2022 18:33:11: 65000000 INFO @ Tue, 02 Aug 2022 18:33:16: 66000000 INFO @ Tue, 02 Aug 2022 18:33:17: 66000000 INFO @ Tue, 02 Aug 2022 18:33:23: 67000000 INFO @ Tue, 02 Aug 2022 18:33:23: 67000000 INFO @ Tue, 02 Aug 2022 18:33:29: 68000000 INFO @ Tue, 02 Aug 2022 18:33:30: 68000000 INFO @ Tue, 02 Aug 2022 18:33:35: 69000000 INFO @ Tue, 02 Aug 2022 18:33:36: 69000000 INFO @ Tue, 02 Aug 2022 18:33:42: 70000000 INFO @ Tue, 02 Aug 2022 18:33:42: 70000000 INFO @ Tue, 02 Aug 2022 18:33:48: 71000000 INFO @ Tue, 02 Aug 2022 18:33:49: 71000000 INFO @ Tue, 02 Aug 2022 18:33:54: 72000000 INFO @ Tue, 02 Aug 2022 18:33:54: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 18:33:54: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 18:33:54: #1 total tags in treatment: 27324138 INFO @ Tue, 02 Aug 2022 18:33:54: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 18:33:54: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 18:33:55: 72000000 INFO @ Tue, 02 Aug 2022 18:33:55: #1 tags after filtering in treatment: 16124847 INFO @ Tue, 02 Aug 2022 18:33:55: #1 Redundant rate of treatment: 0.41 INFO @ Tue, 02 Aug 2022 18:33:55: #1 finished! INFO @ Tue, 02 Aug 2022 18:33:55: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 18:33:55: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 18:33:55: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 18:33:55: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 18:33:55: #1 total tags in treatment: 27324138 INFO @ Tue, 02 Aug 2022 18:33:55: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 18:33:55: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 18:33:56: #1 tags after filtering in treatment: 16124847 INFO @ Tue, 02 Aug 2022 18:33:56: #1 Redundant rate of treatment: 0.41 INFO @ Tue, 02 Aug 2022 18:33:56: #1 finished! INFO @ Tue, 02 Aug 2022 18:33:56: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 18:33:56: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 18:33:56: #2 number of paired peaks: 1539 INFO @ Tue, 02 Aug 2022 18:33:56: start model_add_line... INFO @ Tue, 02 Aug 2022 18:33:56: start X-correlation... INFO @ Tue, 02 Aug 2022 18:33:56: end of X-cor INFO @ Tue, 02 Aug 2022 18:33:56: #2 finished! INFO @ Tue, 02 Aug 2022 18:33:56: #2 predicted fragment length is 77 bps INFO @ Tue, 02 Aug 2022 18:33:56: #2 alternative fragment length(s) may be 4,77 bps INFO @ Tue, 02 Aug 2022 18:33:56: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178819/SRX12178819.10_model.r WARNING @ Tue, 02 Aug 2022 18:33:56: #2 Since the d (77) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 18:33:56: #2 You may need to consider one of the other alternative d(s): 4,77 WARNING @ Tue, 02 Aug 2022 18:33:56: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 18:33:56: #3 Call peaks... INFO @ Tue, 02 Aug 2022 18:33:56: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 18:33:57: #2 number of paired peaks: 1539 INFO @ Tue, 02 Aug 2022 18:33:57: start model_add_line... INFO @ Tue, 02 Aug 2022 18:33:57: start X-correlation... INFO @ Tue, 02 Aug 2022 18:33:57: end of X-cor INFO @ Tue, 02 Aug 2022 18:33:57: #2 finished! INFO @ Tue, 02 Aug 2022 18:33:57: #2 predicted fragment length is 77 bps INFO @ Tue, 02 Aug 2022 18:33:57: #2 alternative fragment length(s) may be 4,77 bps INFO @ Tue, 02 Aug 2022 18:33:57: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178819/SRX12178819.20_model.r WARNING @ Tue, 02 Aug 2022 18:33:57: #2 Since the d (77) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 18:33:57: #2 You may need to consider one of the other alternative d(s): 4,77 WARNING @ Tue, 02 Aug 2022 18:33:57: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 18:33:57: #3 Call peaks... INFO @ Tue, 02 Aug 2022 18:33:57: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 18:34:28: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 18:34:29: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 18:34:43: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178819/SRX12178819.10_peaks.xls INFO @ Tue, 02 Aug 2022 18:34:43: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178819/SRX12178819.10_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 18:34:43: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178819/SRX12178819.10_summits.bed INFO @ Tue, 02 Aug 2022 18:34:43: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (12117 records, 4 fields): 26 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 18:34:45: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178819/SRX12178819.20_peaks.xls INFO @ Tue, 02 Aug 2022 18:34:45: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178819/SRX12178819.20_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 18:34:45: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178819/SRX12178819.20_summits.bed INFO @ Tue, 02 Aug 2022 18:34:45: Done! pass1 - making usageList (14 chroms): 1 millis pass2 - checking and writing primary data (2887 records, 4 fields): 30 millis CompletedMACS2peakCalling