Job ID = 16440104 SRX = SRX12178808 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2022-08-02T08:09:34 prefetch.2.10.7: 1) Downloading 'SRR15888106'... 2022-08-02T08:09:34 prefetch.2.10.7: Downloading via HTTPS... 2022-08-02T08:12:04 prefetch.2.10.7: HTTPS download succeed 2022-08-02T08:12:04 prefetch.2.10.7: 1) 'SRR15888106' was downloaded successfully 2022-08-02T08:12:04 prefetch.2.10.7: 'SRR15888106' has 0 unresolved dependencies Read 52166751 spots for SRR15888106/SRR15888106.sra Written 52166751 spots for SRR15888106/SRR15888106.sra fastq に変換しました。 bowtie でマッピング中... Your job 16440938 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:49:48 52166751 reads; of these: 52166751 (100.00%) were paired; of these: 17860516 (34.24%) aligned concordantly 0 times 30111598 (57.72%) aligned concordantly exactly 1 time 4194637 (8.04%) aligned concordantly >1 times ---- 17860516 pairs aligned concordantly 0 times; of these: 8034628 (44.99%) aligned discordantly 1 time ---- 9825888 pairs aligned 0 times concordantly or discordantly; of these: 19651776 mates make up the pairs; of these: 11034984 (56.15%) aligned 0 times 6429568 (32.72%) aligned exactly 1 time 2187224 (11.13%) aligned >1 times 89.42% overall alignment rate Time searching: 00:49:48 Overall time: 00:49:48 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 40 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 6640203 / 42227943 = 0.1572 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 18:28:39: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178808/SRX12178808.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178808/SRX12178808.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178808/SRX12178808.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178808/SRX12178808.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 18:28:39: #1 read tag files... INFO @ Tue, 02 Aug 2022 18:28:39: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 18:28:44: 1000000 INFO @ Tue, 02 Aug 2022 18:28:50: 2000000 INFO @ Tue, 02 Aug 2022 18:28:56: 3000000 INFO @ Tue, 02 Aug 2022 18:29:01: 4000000 INFO @ Tue, 02 Aug 2022 18:29:06: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 18:29:08: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178808/SRX12178808.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178808/SRX12178808.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178808/SRX12178808.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178808/SRX12178808.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 18:29:08: #1 read tag files... INFO @ Tue, 02 Aug 2022 18:29:08: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 18:29:11: 6000000 INFO @ Tue, 02 Aug 2022 18:29:15: 1000000 INFO @ Tue, 02 Aug 2022 18:29:17: 7000000 INFO @ Tue, 02 Aug 2022 18:29:21: 2000000 INFO @ Tue, 02 Aug 2022 18:29:23: 8000000 INFO @ Tue, 02 Aug 2022 18:29:28: 3000000 INFO @ Tue, 02 Aug 2022 18:29:28: 9000000 INFO @ Tue, 02 Aug 2022 18:29:34: 4000000 INFO @ Tue, 02 Aug 2022 18:29:34: 10000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 18:29:38: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178808/SRX12178808.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178808/SRX12178808.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178808/SRX12178808.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178808/SRX12178808.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 18:29:38: #1 read tag files... INFO @ Tue, 02 Aug 2022 18:29:38: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 18:29:40: 11000000 INFO @ Tue, 02 Aug 2022 18:29:40: 5000000 INFO @ Tue, 02 Aug 2022 18:29:45: 1000000 INFO @ Tue, 02 Aug 2022 18:29:47: 12000000 INFO @ Tue, 02 Aug 2022 18:29:47: 6000000 INFO @ Tue, 02 Aug 2022 18:29:52: 2000000 INFO @ Tue, 02 Aug 2022 18:29:53: 13000000 INFO @ Tue, 02 Aug 2022 18:29:54: 7000000 INFO @ Tue, 02 Aug 2022 18:29:58: 3000000 INFO @ Tue, 02 Aug 2022 18:29:59: 14000000 INFO @ Tue, 02 Aug 2022 18:30:01: 8000000 INFO @ Tue, 02 Aug 2022 18:30:05: 15000000 INFO @ Tue, 02 Aug 2022 18:30:05: 4000000 INFO @ Tue, 02 Aug 2022 18:30:07: 9000000 INFO @ Tue, 02 Aug 2022 18:30:11: 16000000 INFO @ Tue, 02 Aug 2022 18:30:12: 5000000 INFO @ Tue, 02 Aug 2022 18:30:14: 10000000 INFO @ Tue, 02 Aug 2022 18:30:17: 17000000 INFO @ Tue, 02 Aug 2022 18:30:18: 6000000 INFO @ Tue, 02 Aug 2022 18:30:20: 11000000 INFO @ Tue, 02 Aug 2022 18:30:23: 18000000 INFO @ Tue, 02 Aug 2022 18:30:25: 7000000 INFO @ Tue, 02 Aug 2022 18:30:27: 12000000 INFO @ Tue, 02 Aug 2022 18:30:29: 19000000 INFO @ Tue, 02 Aug 2022 18:30:32: 8000000 INFO @ Tue, 02 Aug 2022 18:30:34: 13000000 INFO @ Tue, 02 Aug 2022 18:30:35: 20000000 INFO @ Tue, 02 Aug 2022 18:30:39: 9000000 INFO @ Tue, 02 Aug 2022 18:30:40: 14000000 INFO @ Tue, 02 Aug 2022 18:30:41: 21000000 INFO @ Tue, 02 Aug 2022 18:30:45: 10000000 INFO @ Tue, 02 Aug 2022 18:30:47: 22000000 INFO @ Tue, 02 Aug 2022 18:30:47: 15000000 INFO @ Tue, 02 Aug 2022 18:30:52: 11000000 INFO @ Tue, 02 Aug 2022 18:30:53: 23000000 INFO @ Tue, 02 Aug 2022 18:30:54: 16000000 INFO @ Tue, 02 Aug 2022 18:30:58: 12000000 INFO @ Tue, 02 Aug 2022 18:30:58: 24000000 INFO @ Tue, 02 Aug 2022 18:31:00: 17000000 INFO @ Tue, 02 Aug 2022 18:31:04: 25000000 INFO @ Tue, 02 Aug 2022 18:31:05: 13000000 INFO @ Tue, 02 Aug 2022 18:31:07: 18000000 INFO @ Tue, 02 Aug 2022 18:31:10: 26000000 INFO @ Tue, 02 Aug 2022 18:31:11: 14000000 INFO @ Tue, 02 Aug 2022 18:31:14: 19000000 INFO @ Tue, 02 Aug 2022 18:31:16: 27000000 INFO @ Tue, 02 Aug 2022 18:31:18: 15000000 INFO @ Tue, 02 Aug 2022 18:31:20: 20000000 INFO @ Tue, 02 Aug 2022 18:31:22: 28000000 INFO @ Tue, 02 Aug 2022 18:31:24: 16000000 INFO @ Tue, 02 Aug 2022 18:31:27: 21000000 INFO @ Tue, 02 Aug 2022 18:31:28: 29000000 INFO @ Tue, 02 Aug 2022 18:31:31: 17000000 INFO @ Tue, 02 Aug 2022 18:31:34: 22000000 INFO @ Tue, 02 Aug 2022 18:31:34: 30000000 INFO @ Tue, 02 Aug 2022 18:31:37: 18000000 INFO @ Tue, 02 Aug 2022 18:31:39: 31000000 INFO @ Tue, 02 Aug 2022 18:31:40: 23000000 INFO @ Tue, 02 Aug 2022 18:31:44: 19000000 INFO @ Tue, 02 Aug 2022 18:31:45: 32000000 INFO @ Tue, 02 Aug 2022 18:31:47: 24000000 INFO @ Tue, 02 Aug 2022 18:31:50: 20000000 INFO @ Tue, 02 Aug 2022 18:31:51: 33000000 INFO @ Tue, 02 Aug 2022 18:31:54: 25000000 INFO @ Tue, 02 Aug 2022 18:31:57: 21000000 INFO @ Tue, 02 Aug 2022 18:31:57: 34000000 INFO @ Tue, 02 Aug 2022 18:32:01: 26000000 INFO @ Tue, 02 Aug 2022 18:32:03: 35000000 INFO @ Tue, 02 Aug 2022 18:32:03: 22000000 INFO @ Tue, 02 Aug 2022 18:32:08: 27000000 INFO @ Tue, 02 Aug 2022 18:32:10: 36000000 INFO @ Tue, 02 Aug 2022 18:32:10: 23000000 INFO @ Tue, 02 Aug 2022 18:32:14: 28000000 INFO @ Tue, 02 Aug 2022 18:32:16: 37000000 INFO @ Tue, 02 Aug 2022 18:32:17: 24000000 INFO @ Tue, 02 Aug 2022 18:32:21: 29000000 INFO @ Tue, 02 Aug 2022 18:32:21: 38000000 INFO @ Tue, 02 Aug 2022 18:32:23: 25000000 INFO @ Tue, 02 Aug 2022 18:32:27: 39000000 INFO @ Tue, 02 Aug 2022 18:32:28: 30000000 INFO @ Tue, 02 Aug 2022 18:32:31: 26000000 INFO @ Tue, 02 Aug 2022 18:32:33: 40000000 INFO @ Tue, 02 Aug 2022 18:32:34: 31000000 INFO @ Tue, 02 Aug 2022 18:32:38: 27000000 INFO @ Tue, 02 Aug 2022 18:32:39: 41000000 INFO @ Tue, 02 Aug 2022 18:32:40: 32000000 INFO @ Tue, 02 Aug 2022 18:32:44: 28000000 INFO @ Tue, 02 Aug 2022 18:32:45: 42000000 INFO @ Tue, 02 Aug 2022 18:32:47: 33000000 INFO @ Tue, 02 Aug 2022 18:32:51: 43000000 INFO @ Tue, 02 Aug 2022 18:32:52: 29000000 INFO @ Tue, 02 Aug 2022 18:32:54: 34000000 INFO @ Tue, 02 Aug 2022 18:32:57: 44000000 INFO @ Tue, 02 Aug 2022 18:32:58: 30000000 INFO @ Tue, 02 Aug 2022 18:33:00: 35000000 INFO @ Tue, 02 Aug 2022 18:33:03: 45000000 INFO @ Tue, 02 Aug 2022 18:33:05: 31000000 INFO @ Tue, 02 Aug 2022 18:33:07: 36000000 INFO @ Tue, 02 Aug 2022 18:33:09: 46000000 INFO @ Tue, 02 Aug 2022 18:33:12: 32000000 INFO @ Tue, 02 Aug 2022 18:33:14: 37000000 INFO @ Tue, 02 Aug 2022 18:33:14: 47000000 INFO @ Tue, 02 Aug 2022 18:33:19: 33000000 INFO @ Tue, 02 Aug 2022 18:33:20: 48000000 INFO @ Tue, 02 Aug 2022 18:33:21: 38000000 INFO @ Tue, 02 Aug 2022 18:33:26: 49000000 INFO @ Tue, 02 Aug 2022 18:33:26: 34000000 INFO @ Tue, 02 Aug 2022 18:33:27: 39000000 INFO @ Tue, 02 Aug 2022 18:33:32: 50000000 INFO @ Tue, 02 Aug 2022 18:33:32: 35000000 INFO @ Tue, 02 Aug 2022 18:33:34: 40000000 INFO @ Tue, 02 Aug 2022 18:33:37: 51000000 INFO @ Tue, 02 Aug 2022 18:33:39: 36000000 INFO @ Tue, 02 Aug 2022 18:33:42: 41000000 INFO @ Tue, 02 Aug 2022 18:33:43: 52000000 INFO @ Tue, 02 Aug 2022 18:33:47: 37000000 INFO @ Tue, 02 Aug 2022 18:33:49: 53000000 INFO @ Tue, 02 Aug 2022 18:33:49: 42000000 INFO @ Tue, 02 Aug 2022 18:33:54: 38000000 INFO @ Tue, 02 Aug 2022 18:33:55: 54000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 02 Aug 2022 18:33:56: 43000000 INFO @ Tue, 02 Aug 2022 18:34:00: 39000000 INFO @ Tue, 02 Aug 2022 18:34:01: 55000000 INFO @ Tue, 02 Aug 2022 18:34:03: 44000000 INFO @ Tue, 02 Aug 2022 18:34:06: 56000000 INFO @ Tue, 02 Aug 2022 18:34:07: 40000000 INFO @ Tue, 02 Aug 2022 18:34:09: 45000000 INFO @ Tue, 02 Aug 2022 18:34:12: 57000000 INFO @ Tue, 02 Aug 2022 18:34:14: 41000000 INFO @ Tue, 02 Aug 2022 18:34:16: 46000000 INFO @ Tue, 02 Aug 2022 18:34:18: 58000000 INFO @ Tue, 02 Aug 2022 18:34:20: 42000000 INFO @ Tue, 02 Aug 2022 18:34:22: 47000000 INFO @ Tue, 02 Aug 2022 18:34:24: 59000000 INFO @ Tue, 02 Aug 2022 18:34:27: 43000000 INFO @ Tue, 02 Aug 2022 18:34:28: 48000000 INFO @ Tue, 02 Aug 2022 18:34:30: 60000000 INFO @ Tue, 02 Aug 2022 18:34:34: 44000000 INFO @ Tue, 02 Aug 2022 18:34:35: 49000000 INFO @ Tue, 02 Aug 2022 18:34:35: 61000000 INFO @ Tue, 02 Aug 2022 18:34:40: 45000000 INFO @ Tue, 02 Aug 2022 18:34:42: 50000000 INFO @ Tue, 02 Aug 2022 18:34:42: 62000000 INFO @ Tue, 02 Aug 2022 18:34:47: 46000000 INFO @ Tue, 02 Aug 2022 18:34:48: 63000000 INFO @ Tue, 02 Aug 2022 18:34:48: 51000000 INFO @ Tue, 02 Aug 2022 18:34:54: 64000000 INFO @ Tue, 02 Aug 2022 18:34:54: 47000000 INFO @ Tue, 02 Aug 2022 18:34:55: 52000000 INFO @ Tue, 02 Aug 2022 18:34:59: 65000000 INFO @ Tue, 02 Aug 2022 18:35:01: 48000000 INFO @ Tue, 02 Aug 2022 18:35:02: 53000000 INFO @ Tue, 02 Aug 2022 18:35:05: 66000000 INFO @ Tue, 02 Aug 2022 18:35:08: 49000000 INFO @ Tue, 02 Aug 2022 18:35:08: 54000000 BigWig に変換しました。 INFO @ Tue, 02 Aug 2022 18:35:11: 67000000 INFO @ Tue, 02 Aug 2022 18:35:14: 50000000 INFO @ Tue, 02 Aug 2022 18:35:15: 55000000 INFO @ Tue, 02 Aug 2022 18:35:18: 68000000 INFO @ Tue, 02 Aug 2022 18:35:21: 51000000 INFO @ Tue, 02 Aug 2022 18:35:22: 56000000 INFO @ Tue, 02 Aug 2022 18:35:24: 69000000 INFO @ Tue, 02 Aug 2022 18:35:27: 52000000 INFO @ Tue, 02 Aug 2022 18:35:28: 57000000 INFO @ Tue, 02 Aug 2022 18:35:30: 70000000 INFO @ Tue, 02 Aug 2022 18:35:34: 53000000 INFO @ Tue, 02 Aug 2022 18:35:35: 58000000 INFO @ Tue, 02 Aug 2022 18:35:37: 71000000 INFO @ Tue, 02 Aug 2022 18:35:41: 54000000 INFO @ Tue, 02 Aug 2022 18:35:42: 59000000 INFO @ Tue, 02 Aug 2022 18:35:43: 72000000 INFO @ Tue, 02 Aug 2022 18:35:48: 55000000 INFO @ Tue, 02 Aug 2022 18:35:48: 60000000 INFO @ Tue, 02 Aug 2022 18:35:49: 73000000 INFO @ Tue, 02 Aug 2022 18:35:55: 56000000 INFO @ Tue, 02 Aug 2022 18:35:55: 74000000 INFO @ Tue, 02 Aug 2022 18:35:55: 61000000 INFO @ Tue, 02 Aug 2022 18:36:01: 75000000 INFO @ Tue, 02 Aug 2022 18:36:02: 57000000 INFO @ Tue, 02 Aug 2022 18:36:02: 62000000 INFO @ Tue, 02 Aug 2022 18:36:07: 76000000 INFO @ Tue, 02 Aug 2022 18:36:09: 58000000 INFO @ Tue, 02 Aug 2022 18:36:09: 63000000 INFO @ Tue, 02 Aug 2022 18:36:14: 77000000 INFO @ Tue, 02 Aug 2022 18:36:15: 59000000 INFO @ Tue, 02 Aug 2022 18:36:16: 64000000 INFO @ Tue, 02 Aug 2022 18:36:20: 78000000 INFO @ Tue, 02 Aug 2022 18:36:22: 60000000 INFO @ Tue, 02 Aug 2022 18:36:22: 65000000 INFO @ Tue, 02 Aug 2022 18:36:26: 79000000 INFO @ Tue, 02 Aug 2022 18:36:29: 61000000 INFO @ Tue, 02 Aug 2022 18:36:29: 66000000 INFO @ Tue, 02 Aug 2022 18:36:32: 80000000 INFO @ Tue, 02 Aug 2022 18:36:32: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 18:36:32: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 18:36:32: #1 total tags in treatment: 28454795 INFO @ Tue, 02 Aug 2022 18:36:32: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 18:36:32: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 18:36:32: #1 tags after filtering in treatment: 16928615 INFO @ Tue, 02 Aug 2022 18:36:32: #1 Redundant rate of treatment: 0.41 INFO @ Tue, 02 Aug 2022 18:36:32: #1 finished! INFO @ Tue, 02 Aug 2022 18:36:32: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 18:36:32: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 18:36:34: #2 number of paired peaks: 1106 INFO @ Tue, 02 Aug 2022 18:36:34: start model_add_line... INFO @ Tue, 02 Aug 2022 18:36:34: start X-correlation... INFO @ Tue, 02 Aug 2022 18:36:34: end of X-cor INFO @ Tue, 02 Aug 2022 18:36:34: #2 finished! INFO @ Tue, 02 Aug 2022 18:36:34: #2 predicted fragment length is 60 bps INFO @ Tue, 02 Aug 2022 18:36:34: #2 alternative fragment length(s) may be 4,60 bps INFO @ Tue, 02 Aug 2022 18:36:34: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178808/SRX12178808.05_model.r WARNING @ Tue, 02 Aug 2022 18:36:34: #2 Since the d (60) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 18:36:34: #2 You may need to consider one of the other alternative d(s): 4,60 WARNING @ Tue, 02 Aug 2022 18:36:34: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 18:36:34: #3 Call peaks... INFO @ Tue, 02 Aug 2022 18:36:34: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 18:36:36: 67000000 INFO @ Tue, 02 Aug 2022 18:36:36: 62000000 INFO @ Tue, 02 Aug 2022 18:36:43: 63000000 INFO @ Tue, 02 Aug 2022 18:36:43: 68000000 INFO @ Tue, 02 Aug 2022 18:36:49: 64000000 INFO @ Tue, 02 Aug 2022 18:36:49: 69000000 INFO @ Tue, 02 Aug 2022 18:36:56: 65000000 INFO @ Tue, 02 Aug 2022 18:36:56: 70000000 INFO @ Tue, 02 Aug 2022 18:37:03: 66000000 INFO @ Tue, 02 Aug 2022 18:37:03: 71000000 INFO @ Tue, 02 Aug 2022 18:37:04: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 18:37:09: 67000000 INFO @ Tue, 02 Aug 2022 18:37:10: 72000000 INFO @ Tue, 02 Aug 2022 18:37:16: 73000000 INFO @ Tue, 02 Aug 2022 18:37:16: 68000000 INFO @ Tue, 02 Aug 2022 18:37:19: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178808/SRX12178808.05_peaks.xls INFO @ Tue, 02 Aug 2022 18:37:19: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178808/SRX12178808.05_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 18:37:20: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178808/SRX12178808.05_summits.bed INFO @ Tue, 02 Aug 2022 18:37:20: Done! pass1 - making usageList (15 chroms): 4 millis pass2 - checking and writing primary data (21779 records, 4 fields): 61 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 18:37:23: 74000000 INFO @ Tue, 02 Aug 2022 18:37:23: 69000000 INFO @ Tue, 02 Aug 2022 18:37:29: 75000000 INFO @ Tue, 02 Aug 2022 18:37:30: 70000000 INFO @ Tue, 02 Aug 2022 18:37:35: 76000000 INFO @ Tue, 02 Aug 2022 18:37:37: 71000000 INFO @ Tue, 02 Aug 2022 18:37:42: 77000000 INFO @ Tue, 02 Aug 2022 18:37:43: 72000000 INFO @ Tue, 02 Aug 2022 18:37:49: 78000000 INFO @ Tue, 02 Aug 2022 18:37:49: 73000000 INFO @ Tue, 02 Aug 2022 18:37:55: 79000000 INFO @ Tue, 02 Aug 2022 18:37:56: 74000000 INFO @ Tue, 02 Aug 2022 18:38:01: 80000000 INFO @ Tue, 02 Aug 2022 18:38:02: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 18:38:02: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 18:38:02: #1 total tags in treatment: 28454795 INFO @ Tue, 02 Aug 2022 18:38:02: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 18:38:02: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 18:38:02: 75000000 INFO @ Tue, 02 Aug 2022 18:38:02: #1 tags after filtering in treatment: 16928615 INFO @ Tue, 02 Aug 2022 18:38:02: #1 Redundant rate of treatment: 0.41 INFO @ Tue, 02 Aug 2022 18:38:02: #1 finished! INFO @ Tue, 02 Aug 2022 18:38:02: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 18:38:02: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 18:38:04: #2 number of paired peaks: 1106 INFO @ Tue, 02 Aug 2022 18:38:04: start model_add_line... INFO @ Tue, 02 Aug 2022 18:38:04: start X-correlation... INFO @ Tue, 02 Aug 2022 18:38:04: end of X-cor INFO @ Tue, 02 Aug 2022 18:38:04: #2 finished! INFO @ Tue, 02 Aug 2022 18:38:04: #2 predicted fragment length is 60 bps INFO @ Tue, 02 Aug 2022 18:38:04: #2 alternative fragment length(s) may be 4,60 bps INFO @ Tue, 02 Aug 2022 18:38:04: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178808/SRX12178808.10_model.r WARNING @ Tue, 02 Aug 2022 18:38:04: #2 Since the d (60) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 18:38:04: #2 You may need to consider one of the other alternative d(s): 4,60 WARNING @ Tue, 02 Aug 2022 18:38:04: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 18:38:04: #3 Call peaks... INFO @ Tue, 02 Aug 2022 18:38:04: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 18:38:08: 76000000 INFO @ Tue, 02 Aug 2022 18:38:15: 77000000 INFO @ Tue, 02 Aug 2022 18:38:21: 78000000 INFO @ Tue, 02 Aug 2022 18:38:27: 79000000 INFO @ Tue, 02 Aug 2022 18:38:33: 80000000 INFO @ Tue, 02 Aug 2022 18:38:34: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 18:38:34: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 18:38:34: #1 total tags in treatment: 28454795 INFO @ Tue, 02 Aug 2022 18:38:34: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 18:38:34: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 18:38:34: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 18:38:34: #1 tags after filtering in treatment: 16928615 INFO @ Tue, 02 Aug 2022 18:38:34: #1 Redundant rate of treatment: 0.41 INFO @ Tue, 02 Aug 2022 18:38:34: #1 finished! INFO @ Tue, 02 Aug 2022 18:38:34: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 18:38:34: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 18:38:35: #2 number of paired peaks: 1106 INFO @ Tue, 02 Aug 2022 18:38:35: start model_add_line... INFO @ Tue, 02 Aug 2022 18:38:36: start X-correlation... INFO @ Tue, 02 Aug 2022 18:38:36: end of X-cor INFO @ Tue, 02 Aug 2022 18:38:36: #2 finished! INFO @ Tue, 02 Aug 2022 18:38:36: #2 predicted fragment length is 60 bps INFO @ Tue, 02 Aug 2022 18:38:36: #2 alternative fragment length(s) may be 4,60 bps INFO @ Tue, 02 Aug 2022 18:38:36: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178808/SRX12178808.20_model.r WARNING @ Tue, 02 Aug 2022 18:38:36: #2 Since the d (60) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 18:38:36: #2 You may need to consider one of the other alternative d(s): 4,60 WARNING @ Tue, 02 Aug 2022 18:38:36: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 18:38:36: #3 Call peaks... INFO @ Tue, 02 Aug 2022 18:38:36: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 18:38:49: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178808/SRX12178808.10_peaks.xls INFO @ Tue, 02 Aug 2022 18:38:49: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178808/SRX12178808.10_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 18:38:49: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178808/SRX12178808.10_summits.bed INFO @ Tue, 02 Aug 2022 18:38:49: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (10441 records, 4 fields): 25 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 18:39:07: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 18:39:22: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178808/SRX12178808.20_peaks.xls INFO @ Tue, 02 Aug 2022 18:39:22: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178808/SRX12178808.20_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 18:39:22: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178808/SRX12178808.20_summits.bed INFO @ Tue, 02 Aug 2022 18:39:22: Done! pass1 - making usageList (12 chroms): 1 millis pass2 - checking and writing primary data (1187 records, 4 fields): 35 millis CompletedMACS2peakCalling