Job ID = 16439657 SRX = SRX11499356 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 10377218 spots for SRR15192702/SRR15192702.sra Written 10377218 spots for SRR15192702/SRR15192702.sra Read 14087723 spots for SRR15192703/SRR15192703.sra Written 14087723 spots for SRR15192703/SRR15192703.sra fastq に変換しました。 bowtie でマッピング中... Your job 16440136 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:22:34 24464941 reads; of these: 24464941 (100.00%) were paired; of these: 3592842 (14.69%) aligned concordantly 0 times 15587526 (63.71%) aligned concordantly exactly 1 time 5284573 (21.60%) aligned concordantly >1 times ---- 3592842 pairs aligned concordantly 0 times; of these: 1651171 (45.96%) aligned discordantly 1 time ---- 1941671 pairs aligned 0 times concordantly or discordantly; of these: 3883342 mates make up the pairs; of these: 1698777 (43.75%) aligned 0 times 904375 (23.29%) aligned exactly 1 time 1280190 (32.97%) aligned >1 times 96.53% overall alignment rate Time searching: 01:22:34 Overall time: 01:22:34 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 36 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 2587680 / 20330689 = 0.1273 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 17:37:05: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX11499356/SRX11499356.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX11499356/SRX11499356.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX11499356/SRX11499356.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX11499356/SRX11499356.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 17:37:05: #1 read tag files... INFO @ Tue, 02 Aug 2022 17:37:05: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 17:37:13: 1000000 INFO @ Tue, 02 Aug 2022 17:37:20: 2000000 INFO @ Tue, 02 Aug 2022 17:37:27: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 17:37:34: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX11499356/SRX11499356.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX11499356/SRX11499356.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX11499356/SRX11499356.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX11499356/SRX11499356.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 17:37:34: #1 read tag files... INFO @ Tue, 02 Aug 2022 17:37:34: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 17:37:35: 4000000 INFO @ Tue, 02 Aug 2022 17:37:43: 1000000 INFO @ Tue, 02 Aug 2022 17:37:43: 5000000 INFO @ Tue, 02 Aug 2022 17:37:51: 6000000 INFO @ Tue, 02 Aug 2022 17:37:51: 2000000 INFO @ Tue, 02 Aug 2022 17:37:59: 7000000 INFO @ Tue, 02 Aug 2022 17:38:00: 3000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 17:38:04: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX11499356/SRX11499356.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX11499356/SRX11499356.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX11499356/SRX11499356.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX11499356/SRX11499356.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 17:38:04: #1 read tag files... INFO @ Tue, 02 Aug 2022 17:38:04: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 17:38:07: 8000000 INFO @ Tue, 02 Aug 2022 17:38:09: 4000000 INFO @ Tue, 02 Aug 2022 17:38:14: 1000000 INFO @ Tue, 02 Aug 2022 17:38:16: 9000000 INFO @ Tue, 02 Aug 2022 17:38:17: 5000000 INFO @ Tue, 02 Aug 2022 17:38:23: 2000000 INFO @ Tue, 02 Aug 2022 17:38:24: 10000000 INFO @ Tue, 02 Aug 2022 17:38:26: 6000000 INFO @ Tue, 02 Aug 2022 17:38:32: 11000000 INFO @ Tue, 02 Aug 2022 17:38:33: 3000000 INFO @ Tue, 02 Aug 2022 17:38:35: 7000000 INFO @ Tue, 02 Aug 2022 17:38:41: 12000000 INFO @ Tue, 02 Aug 2022 17:38:43: 4000000 INFO @ Tue, 02 Aug 2022 17:38:44: 8000000 INFO @ Tue, 02 Aug 2022 17:38:49: 13000000 INFO @ Tue, 02 Aug 2022 17:38:52: 5000000 INFO @ Tue, 02 Aug 2022 17:38:52: 9000000 INFO @ Tue, 02 Aug 2022 17:38:57: 14000000 INFO @ Tue, 02 Aug 2022 17:39:01: 10000000 INFO @ Tue, 02 Aug 2022 17:39:02: 6000000 INFO @ Tue, 02 Aug 2022 17:39:06: 15000000 INFO @ Tue, 02 Aug 2022 17:39:10: 11000000 INFO @ Tue, 02 Aug 2022 17:39:11: 7000000 INFO @ Tue, 02 Aug 2022 17:39:14: 16000000 INFO @ Tue, 02 Aug 2022 17:39:18: 12000000 INFO @ Tue, 02 Aug 2022 17:39:20: 8000000 INFO @ Tue, 02 Aug 2022 17:39:23: 17000000 INFO @ Tue, 02 Aug 2022 17:39:27: 13000000 INFO @ Tue, 02 Aug 2022 17:39:30: 9000000 INFO @ Tue, 02 Aug 2022 17:39:31: 18000000 INFO @ Tue, 02 Aug 2022 17:39:35: 14000000 INFO @ Tue, 02 Aug 2022 17:39:40: 10000000 INFO @ Tue, 02 Aug 2022 17:39:40: 19000000 INFO @ Tue, 02 Aug 2022 17:39:44: 15000000 INFO @ Tue, 02 Aug 2022 17:39:48: 20000000 INFO @ Tue, 02 Aug 2022 17:39:49: 11000000 INFO @ Tue, 02 Aug 2022 17:39:53: 16000000 INFO @ Tue, 02 Aug 2022 17:39:57: 21000000 INFO @ Tue, 02 Aug 2022 17:39:59: 12000000 INFO @ Tue, 02 Aug 2022 17:40:01: 17000000 INFO @ Tue, 02 Aug 2022 17:40:06: 22000000 INFO @ Tue, 02 Aug 2022 17:40:09: 13000000 INFO @ Tue, 02 Aug 2022 17:40:10: 18000000 INFO @ Tue, 02 Aug 2022 17:40:14: 23000000 INFO @ Tue, 02 Aug 2022 17:40:18: 14000000 INFO @ Tue, 02 Aug 2022 17:40:19: 19000000 INFO @ Tue, 02 Aug 2022 17:40:23: 24000000 INFO @ Tue, 02 Aug 2022 17:40:27: 20000000 INFO @ Tue, 02 Aug 2022 17:40:28: 15000000 INFO @ Tue, 02 Aug 2022 17:40:31: 25000000 INFO @ Tue, 02 Aug 2022 17:40:35: 21000000 INFO @ Tue, 02 Aug 2022 17:40:37: 16000000 INFO @ Tue, 02 Aug 2022 17:40:40: 26000000 INFO @ Tue, 02 Aug 2022 17:40:44: 22000000 INFO @ Tue, 02 Aug 2022 17:40:47: 17000000 INFO @ Tue, 02 Aug 2022 17:40:48: 27000000 INFO @ Tue, 02 Aug 2022 17:40:53: 23000000 INFO @ Tue, 02 Aug 2022 17:40:56: 18000000 INFO @ Tue, 02 Aug 2022 17:40:57: 28000000 INFO @ Tue, 02 Aug 2022 17:41:02: 24000000 INFO @ Tue, 02 Aug 2022 17:41:06: 19000000 INFO @ Tue, 02 Aug 2022 17:41:06: 29000000 INFO @ Tue, 02 Aug 2022 17:41:10: 25000000 INFO @ Tue, 02 Aug 2022 17:41:14: 30000000 INFO @ Tue, 02 Aug 2022 17:41:15: 20000000 INFO @ Tue, 02 Aug 2022 17:41:19: 26000000 INFO @ Tue, 02 Aug 2022 17:41:23: 31000000 INFO @ Tue, 02 Aug 2022 17:41:24: 21000000 INFO @ Tue, 02 Aug 2022 17:41:28: 27000000 INFO @ Tue, 02 Aug 2022 17:41:32: 32000000 INFO @ Tue, 02 Aug 2022 17:41:34: 22000000 INFO @ Tue, 02 Aug 2022 17:41:36: 28000000 INFO @ Tue, 02 Aug 2022 17:41:41: 33000000 INFO @ Tue, 02 Aug 2022 17:41:44: 23000000 INFO @ Tue, 02 Aug 2022 17:41:46: 29000000 INFO @ Tue, 02 Aug 2022 17:41:50: 34000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 02 Aug 2022 17:41:54: 24000000 INFO @ Tue, 02 Aug 2022 17:41:55: 30000000 INFO @ Tue, 02 Aug 2022 17:42:00: 35000000 INFO @ Tue, 02 Aug 2022 17:42:05: 31000000 INFO @ Tue, 02 Aug 2022 17:42:05: 25000000 INFO @ Tue, 02 Aug 2022 17:42:09: 36000000 INFO @ Tue, 02 Aug 2022 17:42:15: 32000000 INFO @ Tue, 02 Aug 2022 17:42:16: 26000000 INFO @ Tue, 02 Aug 2022 17:42:19: 37000000 INFO @ Tue, 02 Aug 2022 17:42:25: 33000000 INFO @ Tue, 02 Aug 2022 17:42:27: 27000000 INFO @ Tue, 02 Aug 2022 17:42:29: 38000000 INFO @ Tue, 02 Aug 2022 17:42:35: 34000000 INFO @ Tue, 02 Aug 2022 17:42:37: 28000000 INFO @ Tue, 02 Aug 2022 17:42:40: 39000000 INFO @ Tue, 02 Aug 2022 17:42:45: 35000000 INFO @ Tue, 02 Aug 2022 17:42:48: 29000000 INFO @ Tue, 02 Aug 2022 17:42:50: 40000000 INFO @ Tue, 02 Aug 2022 17:42:54: 36000000 INFO @ Tue, 02 Aug 2022 17:42:59: 30000000 INFO @ Tue, 02 Aug 2022 17:43:00: 41000000 INFO @ Tue, 02 Aug 2022 17:43:04: 37000000 INFO @ Tue, 02 Aug 2022 17:43:09: 31000000 INFO @ Tue, 02 Aug 2022 17:43:10: 42000000 INFO @ Tue, 02 Aug 2022 17:43:10: #1 tag size is determined as 124 bps INFO @ Tue, 02 Aug 2022 17:43:10: #1 tag size = 124 INFO @ Tue, 02 Aug 2022 17:43:10: #1 total tags in treatment: 18391071 INFO @ Tue, 02 Aug 2022 17:43:10: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 17:43:10: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 17:43:11: #1 tags after filtering in treatment: 17092256 INFO @ Tue, 02 Aug 2022 17:43:11: #1 Redundant rate of treatment: 0.07 INFO @ Tue, 02 Aug 2022 17:43:11: #1 finished! INFO @ Tue, 02 Aug 2022 17:43:11: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 17:43:11: #2 looking for paired plus/minus strand peaks... BigWig に変換しました。 INFO @ Tue, 02 Aug 2022 17:43:12: #2 number of paired peaks: 161 WARNING @ Tue, 02 Aug 2022 17:43:12: Fewer paired peaks (161) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 161 pairs to build model! INFO @ Tue, 02 Aug 2022 17:43:12: start model_add_line... INFO @ Tue, 02 Aug 2022 17:43:12: start X-correlation... INFO @ Tue, 02 Aug 2022 17:43:12: end of X-cor INFO @ Tue, 02 Aug 2022 17:43:12: #2 finished! INFO @ Tue, 02 Aug 2022 17:43:12: #2 predicted fragment length is 224 bps INFO @ Tue, 02 Aug 2022 17:43:12: #2 alternative fragment length(s) may be 224 bps INFO @ Tue, 02 Aug 2022 17:43:12: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX11499356/SRX11499356.05_model.r WARNING @ Tue, 02 Aug 2022 17:43:12: #2 Since the d (224) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 17:43:12: #2 You may need to consider one of the other alternative d(s): 224 WARNING @ Tue, 02 Aug 2022 17:43:12: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 17:43:12: #3 Call peaks... INFO @ Tue, 02 Aug 2022 17:43:12: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 17:43:13: 38000000 INFO @ Tue, 02 Aug 2022 17:43:20: 32000000 INFO @ Tue, 02 Aug 2022 17:43:22: 39000000 INFO @ Tue, 02 Aug 2022 17:43:31: 33000000 INFO @ Tue, 02 Aug 2022 17:43:31: 40000000 INFO @ Tue, 02 Aug 2022 17:43:40: 41000000 INFO @ Tue, 02 Aug 2022 17:43:41: 34000000 INFO @ Tue, 02 Aug 2022 17:43:44: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 17:43:50: 42000000 INFO @ Tue, 02 Aug 2022 17:43:50: #1 tag size is determined as 124 bps INFO @ Tue, 02 Aug 2022 17:43:50: #1 tag size = 124 INFO @ Tue, 02 Aug 2022 17:43:50: #1 total tags in treatment: 18391071 INFO @ Tue, 02 Aug 2022 17:43:50: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 17:43:50: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 17:43:51: #1 tags after filtering in treatment: 17092256 INFO @ Tue, 02 Aug 2022 17:43:51: #1 Redundant rate of treatment: 0.07 INFO @ Tue, 02 Aug 2022 17:43:51: #1 finished! INFO @ Tue, 02 Aug 2022 17:43:51: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 17:43:51: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 17:43:52: 35000000 INFO @ Tue, 02 Aug 2022 17:43:52: #2 number of paired peaks: 161 WARNING @ Tue, 02 Aug 2022 17:43:52: Fewer paired peaks (161) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 161 pairs to build model! INFO @ Tue, 02 Aug 2022 17:43:52: start model_add_line... INFO @ Tue, 02 Aug 2022 17:43:52: start X-correlation... INFO @ Tue, 02 Aug 2022 17:43:52: end of X-cor INFO @ Tue, 02 Aug 2022 17:43:52: #2 finished! INFO @ Tue, 02 Aug 2022 17:43:52: #2 predicted fragment length is 224 bps INFO @ Tue, 02 Aug 2022 17:43:52: #2 alternative fragment length(s) may be 224 bps INFO @ Tue, 02 Aug 2022 17:43:52: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX11499356/SRX11499356.10_model.r WARNING @ Tue, 02 Aug 2022 17:43:52: #2 Since the d (224) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 17:43:52: #2 You may need to consider one of the other alternative d(s): 224 WARNING @ Tue, 02 Aug 2022 17:43:52: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 17:43:52: #3 Call peaks... INFO @ Tue, 02 Aug 2022 17:43:52: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 17:44:01: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX11499356/SRX11499356.05_peaks.xls INFO @ Tue, 02 Aug 2022 17:44:01: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX11499356/SRX11499356.05_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 17:44:01: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX11499356/SRX11499356.05_summits.bed INFO @ Tue, 02 Aug 2022 17:44:01: Done! pass1 - making usageList (15 chroms): 1 millis pass2 - checking and writing primary data (4591 records, 4 fields): 35 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 17:44:02: 36000000 INFO @ Tue, 02 Aug 2022 17:44:11: 37000000 INFO @ Tue, 02 Aug 2022 17:44:21: 38000000 INFO @ Tue, 02 Aug 2022 17:44:26: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 17:44:30: 39000000 INFO @ Tue, 02 Aug 2022 17:44:40: 40000000 INFO @ Tue, 02 Aug 2022 17:44:42: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX11499356/SRX11499356.10_peaks.xls INFO @ Tue, 02 Aug 2022 17:44:42: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX11499356/SRX11499356.10_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 17:44:42: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX11499356/SRX11499356.10_summits.bed INFO @ Tue, 02 Aug 2022 17:44:42: Done! pass1 - making usageList (15 chroms): 1 millis pass2 - checking and writing primary data (2670 records, 4 fields): 11 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 17:44:49: 41000000 INFO @ Tue, 02 Aug 2022 17:44:58: 42000000 INFO @ Tue, 02 Aug 2022 17:44:58: #1 tag size is determined as 124 bps INFO @ Tue, 02 Aug 2022 17:44:58: #1 tag size = 124 INFO @ Tue, 02 Aug 2022 17:44:58: #1 total tags in treatment: 18391071 INFO @ Tue, 02 Aug 2022 17:44:58: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 17:44:58: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 17:44:59: #1 tags after filtering in treatment: 17092256 INFO @ Tue, 02 Aug 2022 17:44:59: #1 Redundant rate of treatment: 0.07 INFO @ Tue, 02 Aug 2022 17:44:59: #1 finished! INFO @ Tue, 02 Aug 2022 17:44:59: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 17:44:59: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 17:45:00: #2 number of paired peaks: 161 WARNING @ Tue, 02 Aug 2022 17:45:00: Fewer paired peaks (161) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 161 pairs to build model! INFO @ Tue, 02 Aug 2022 17:45:00: start model_add_line... INFO @ Tue, 02 Aug 2022 17:45:00: start X-correlation... INFO @ Tue, 02 Aug 2022 17:45:00: end of X-cor INFO @ Tue, 02 Aug 2022 17:45:00: #2 finished! INFO @ Tue, 02 Aug 2022 17:45:00: #2 predicted fragment length is 224 bps INFO @ Tue, 02 Aug 2022 17:45:00: #2 alternative fragment length(s) may be 224 bps INFO @ Tue, 02 Aug 2022 17:45:00: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX11499356/SRX11499356.20_model.r WARNING @ Tue, 02 Aug 2022 17:45:00: #2 Since the d (224) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 17:45:00: #2 You may need to consider one of the other alternative d(s): 224 WARNING @ Tue, 02 Aug 2022 17:45:00: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 17:45:00: #3 Call peaks... INFO @ Tue, 02 Aug 2022 17:45:00: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 17:45:33: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 17:45:49: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX11499356/SRX11499356.20_peaks.xls INFO @ Tue, 02 Aug 2022 17:45:49: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX11499356/SRX11499356.20_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 17:45:49: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX11499356/SRX11499356.20_summits.bed INFO @ Tue, 02 Aug 2022 17:45:49: Done! pass1 - making usageList (14 chroms): 1 millis pass2 - checking and writing primary data (1282 records, 4 fields): 22 millis CompletedMACS2peakCalling