Job ID = 16440070 SRX = SRX10855782 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 36069064 spots for SRR14509969/SRR14509969.sra Written 36069064 spots for SRR14509969/SRR14509969.sra fastq に変換しました。 bowtie でマッピング中... Your job 16441661 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 02:31:01 36069064 reads; of these: 36069064 (100.00%) were paired; of these: 2571029 (7.13%) aligned concordantly 0 times 23723718 (65.77%) aligned concordantly exactly 1 time 9774317 (27.10%) aligned concordantly >1 times ---- 2571029 pairs aligned concordantly 0 times; of these: 501375 (19.50%) aligned discordantly 1 time ---- 2069654 pairs aligned 0 times concordantly or discordantly; of these: 4139308 mates make up the pairs; of these: 2839690 (68.60%) aligned 0 times 791057 (19.11%) aligned exactly 1 time 508561 (12.29%) aligned >1 times 96.06% overall alignment rate Time searching: 02:31:02 Overall time: 02:31:02 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 32 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 13013467 / 33858542 = 0.3843 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 20:08:34: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX10855782/SRX10855782.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX10855782/SRX10855782.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX10855782/SRX10855782.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX10855782/SRX10855782.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 20:08:34: #1 read tag files... INFO @ Tue, 02 Aug 2022 20:08:34: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 20:08:46: 1000000 INFO @ Tue, 02 Aug 2022 20:08:58: 2000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 20:09:02: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX10855782/SRX10855782.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX10855782/SRX10855782.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX10855782/SRX10855782.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX10855782/SRX10855782.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 20:09:02: #1 read tag files... INFO @ Tue, 02 Aug 2022 20:09:02: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 20:09:12: 3000000 INFO @ Tue, 02 Aug 2022 20:09:16: 1000000 INFO @ Tue, 02 Aug 2022 20:09:25: 4000000 INFO @ Tue, 02 Aug 2022 20:09:29: 2000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 20:09:32: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX10855782/SRX10855782.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX10855782/SRX10855782.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX10855782/SRX10855782.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX10855782/SRX10855782.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 20:09:32: #1 read tag files... INFO @ Tue, 02 Aug 2022 20:09:32: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 20:09:38: 5000000 INFO @ Tue, 02 Aug 2022 20:09:42: 3000000 INFO @ Tue, 02 Aug 2022 20:09:47: 1000000 INFO @ Tue, 02 Aug 2022 20:09:51: 6000000 INFO @ Tue, 02 Aug 2022 20:09:57: 4000000 INFO @ Tue, 02 Aug 2022 20:10:02: 2000000 INFO @ Tue, 02 Aug 2022 20:10:04: 7000000 INFO @ Tue, 02 Aug 2022 20:10:11: 5000000 INFO @ Tue, 02 Aug 2022 20:10:17: 3000000 INFO @ Tue, 02 Aug 2022 20:10:17: 8000000 INFO @ Tue, 02 Aug 2022 20:10:24: 6000000 INFO @ Tue, 02 Aug 2022 20:10:29: 9000000 INFO @ Tue, 02 Aug 2022 20:10:31: 4000000 INFO @ Tue, 02 Aug 2022 20:10:38: 7000000 INFO @ Tue, 02 Aug 2022 20:10:43: 10000000 INFO @ Tue, 02 Aug 2022 20:10:46: 5000000 INFO @ Tue, 02 Aug 2022 20:10:52: 8000000 INFO @ Tue, 02 Aug 2022 20:10:56: 11000000 INFO @ Tue, 02 Aug 2022 20:11:02: 6000000 INFO @ Tue, 02 Aug 2022 20:11:05: 9000000 INFO @ Tue, 02 Aug 2022 20:11:09: 12000000 INFO @ Tue, 02 Aug 2022 20:11:17: 7000000 INFO @ Tue, 02 Aug 2022 20:11:19: 10000000 INFO @ Tue, 02 Aug 2022 20:11:23: 13000000 INFO @ Tue, 02 Aug 2022 20:11:32: 8000000 INFO @ Tue, 02 Aug 2022 20:11:32: 11000000 INFO @ Tue, 02 Aug 2022 20:11:36: 14000000 INFO @ Tue, 02 Aug 2022 20:11:45: 12000000 INFO @ Tue, 02 Aug 2022 20:11:47: 9000000 INFO @ Tue, 02 Aug 2022 20:11:49: 15000000 INFO @ Tue, 02 Aug 2022 20:11:59: 13000000 INFO @ Tue, 02 Aug 2022 20:12:02: 16000000 INFO @ Tue, 02 Aug 2022 20:12:03: 10000000 INFO @ Tue, 02 Aug 2022 20:12:13: 14000000 INFO @ Tue, 02 Aug 2022 20:12:16: 17000000 INFO @ Tue, 02 Aug 2022 20:12:19: 11000000 INFO @ Tue, 02 Aug 2022 20:12:26: 15000000 INFO @ Tue, 02 Aug 2022 20:12:29: 18000000 INFO @ Tue, 02 Aug 2022 20:12:34: 12000000 INFO @ Tue, 02 Aug 2022 20:12:41: 16000000 INFO @ Tue, 02 Aug 2022 20:12:44: 19000000 INFO @ Tue, 02 Aug 2022 20:12:50: 13000000 INFO @ Tue, 02 Aug 2022 20:12:54: 17000000 INFO @ Tue, 02 Aug 2022 20:12:58: 20000000 INFO @ Tue, 02 Aug 2022 20:13:06: 14000000 INFO @ Tue, 02 Aug 2022 20:13:08: 18000000 INFO @ Tue, 02 Aug 2022 20:13:12: 21000000 INFO @ Tue, 02 Aug 2022 20:13:21: 15000000 INFO @ Tue, 02 Aug 2022 20:13:22: 19000000 INFO @ Tue, 02 Aug 2022 20:13:27: 22000000 INFO @ Tue, 02 Aug 2022 20:13:35: 20000000 INFO @ Tue, 02 Aug 2022 20:13:37: 16000000 INFO @ Tue, 02 Aug 2022 20:13:41: 23000000 INFO @ Tue, 02 Aug 2022 20:13:48: 21000000 INFO @ Tue, 02 Aug 2022 20:13:53: 17000000 INFO @ Tue, 02 Aug 2022 20:13:55: 24000000 INFO @ Tue, 02 Aug 2022 20:14:00: 22000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 02 Aug 2022 20:14:08: 18000000 INFO @ Tue, 02 Aug 2022 20:14:10: 25000000 INFO @ Tue, 02 Aug 2022 20:14:14: 23000000 INFO @ Tue, 02 Aug 2022 20:14:24: 19000000 INFO @ Tue, 02 Aug 2022 20:14:25: 26000000 INFO @ Tue, 02 Aug 2022 20:14:29: 24000000 INFO @ Tue, 02 Aug 2022 20:14:39: 20000000 INFO @ Tue, 02 Aug 2022 20:14:39: 27000000 INFO @ Tue, 02 Aug 2022 20:14:42: 25000000 INFO @ Tue, 02 Aug 2022 20:14:53: 28000000 INFO @ Tue, 02 Aug 2022 20:14:54: 21000000 INFO @ Tue, 02 Aug 2022 20:14:56: 26000000 INFO @ Tue, 02 Aug 2022 20:15:07: 29000000 INFO @ Tue, 02 Aug 2022 20:15:10: 27000000 INFO @ Tue, 02 Aug 2022 20:15:10: 22000000 INFO @ Tue, 02 Aug 2022 20:15:21: 30000000 INFO @ Tue, 02 Aug 2022 20:15:23: 28000000 INFO @ Tue, 02 Aug 2022 20:15:25: 23000000 BigWig に変換しました。 INFO @ Tue, 02 Aug 2022 20:15:35: 31000000 INFO @ Tue, 02 Aug 2022 20:15:37: 29000000 INFO @ Tue, 02 Aug 2022 20:15:41: 24000000 INFO @ Tue, 02 Aug 2022 20:15:51: 32000000 INFO @ Tue, 02 Aug 2022 20:15:51: 30000000 INFO @ Tue, 02 Aug 2022 20:15:57: 25000000 INFO @ Tue, 02 Aug 2022 20:16:06: 31000000 INFO @ Tue, 02 Aug 2022 20:16:06: 33000000 INFO @ Tue, 02 Aug 2022 20:16:13: 26000000 INFO @ Tue, 02 Aug 2022 20:16:21: 34000000 INFO @ Tue, 02 Aug 2022 20:16:22: 32000000 INFO @ Tue, 02 Aug 2022 20:16:29: 27000000 INFO @ Tue, 02 Aug 2022 20:16:37: 35000000 INFO @ Tue, 02 Aug 2022 20:16:37: 33000000 INFO @ Tue, 02 Aug 2022 20:16:45: 28000000 INFO @ Tue, 02 Aug 2022 20:16:53: 34000000 INFO @ Tue, 02 Aug 2022 20:16:53: 36000000 INFO @ Tue, 02 Aug 2022 20:17:01: 29000000 INFO @ Tue, 02 Aug 2022 20:17:08: 35000000 INFO @ Tue, 02 Aug 2022 20:17:09: 37000000 INFO @ Tue, 02 Aug 2022 20:17:17: 30000000 INFO @ Tue, 02 Aug 2022 20:17:24: 36000000 INFO @ Tue, 02 Aug 2022 20:17:25: 38000000 INFO @ Tue, 02 Aug 2022 20:17:33: 31000000 INFO @ Tue, 02 Aug 2022 20:17:41: 37000000 INFO @ Tue, 02 Aug 2022 20:17:41: 39000000 INFO @ Tue, 02 Aug 2022 20:17:49: 32000000 INFO @ Tue, 02 Aug 2022 20:17:58: 38000000 INFO @ Tue, 02 Aug 2022 20:17:58: 40000000 INFO @ Tue, 02 Aug 2022 20:18:05: 33000000 INFO @ Tue, 02 Aug 2022 20:18:14: 39000000 INFO @ Tue, 02 Aug 2022 20:18:14: 41000000 INFO @ Tue, 02 Aug 2022 20:18:21: 34000000 INFO @ Tue, 02 Aug 2022 20:18:29: 40000000 INFO @ Tue, 02 Aug 2022 20:18:30: 42000000 INFO @ Tue, 02 Aug 2022 20:18:37: 35000000 INFO @ Tue, 02 Aug 2022 20:18:45: 41000000 INFO @ Tue, 02 Aug 2022 20:18:46: 43000000 INFO @ Tue, 02 Aug 2022 20:18:50: #1 tag size is determined as 100 bps INFO @ Tue, 02 Aug 2022 20:18:50: #1 tag size = 100 INFO @ Tue, 02 Aug 2022 20:18:50: #1 total tags in treatment: 20599167 INFO @ Tue, 02 Aug 2022 20:18:50: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 20:18:50: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 20:18:51: #1 tags after filtering in treatment: 15077164 INFO @ Tue, 02 Aug 2022 20:18:51: #1 Redundant rate of treatment: 0.27 INFO @ Tue, 02 Aug 2022 20:18:51: #1 finished! INFO @ Tue, 02 Aug 2022 20:18:51: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 20:18:51: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 20:18:52: #2 number of paired peaks: 228 WARNING @ Tue, 02 Aug 2022 20:18:52: Fewer paired peaks (228) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 228 pairs to build model! INFO @ Tue, 02 Aug 2022 20:18:52: start model_add_line... INFO @ Tue, 02 Aug 2022 20:18:52: start X-correlation... INFO @ Tue, 02 Aug 2022 20:18:52: end of X-cor INFO @ Tue, 02 Aug 2022 20:18:52: #2 finished! INFO @ Tue, 02 Aug 2022 20:18:52: #2 predicted fragment length is 119 bps INFO @ Tue, 02 Aug 2022 20:18:52: #2 alternative fragment length(s) may be 1,119,141 bps INFO @ Tue, 02 Aug 2022 20:18:52: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX10855782/SRX10855782.05_model.r WARNING @ Tue, 02 Aug 2022 20:18:52: #2 Since the d (119) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 20:18:52: #2 You may need to consider one of the other alternative d(s): 1,119,141 WARNING @ Tue, 02 Aug 2022 20:18:52: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 20:18:52: #3 Call peaks... INFO @ Tue, 02 Aug 2022 20:18:52: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 20:18:54: 36000000 INFO @ Tue, 02 Aug 2022 20:19:00: 42000000 INFO @ Tue, 02 Aug 2022 20:19:10: 37000000 INFO @ Tue, 02 Aug 2022 20:19:14: 43000000 INFO @ Tue, 02 Aug 2022 20:19:18: #1 tag size is determined as 100 bps INFO @ Tue, 02 Aug 2022 20:19:18: #1 tag size = 100 INFO @ Tue, 02 Aug 2022 20:19:18: #1 total tags in treatment: 20599167 INFO @ Tue, 02 Aug 2022 20:19:18: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 20:19:18: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 20:19:19: #1 tags after filtering in treatment: 15077164 INFO @ Tue, 02 Aug 2022 20:19:19: #1 Redundant rate of treatment: 0.27 INFO @ Tue, 02 Aug 2022 20:19:19: #1 finished! INFO @ Tue, 02 Aug 2022 20:19:19: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 20:19:19: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 20:19:20: #2 number of paired peaks: 228 WARNING @ Tue, 02 Aug 2022 20:19:20: Fewer paired peaks (228) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 228 pairs to build model! INFO @ Tue, 02 Aug 2022 20:19:20: start model_add_line... INFO @ Tue, 02 Aug 2022 20:19:21: start X-correlation... INFO @ Tue, 02 Aug 2022 20:19:21: end of X-cor INFO @ Tue, 02 Aug 2022 20:19:21: #2 finished! INFO @ Tue, 02 Aug 2022 20:19:21: #2 predicted fragment length is 119 bps INFO @ Tue, 02 Aug 2022 20:19:21: #2 alternative fragment length(s) may be 1,119,141 bps INFO @ Tue, 02 Aug 2022 20:19:21: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX10855782/SRX10855782.10_model.r WARNING @ Tue, 02 Aug 2022 20:19:21: #2 Since the d (119) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 20:19:21: #2 You may need to consider one of the other alternative d(s): 1,119,141 WARNING @ Tue, 02 Aug 2022 20:19:21: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 20:19:21: #3 Call peaks... INFO @ Tue, 02 Aug 2022 20:19:21: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 20:19:26: 38000000 INFO @ Tue, 02 Aug 2022 20:19:38: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 20:19:42: 39000000 INFO @ Tue, 02 Aug 2022 20:19:58: 40000000 INFO @ Tue, 02 Aug 2022 20:20:03: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX10855782/SRX10855782.05_peaks.xls INFO @ Tue, 02 Aug 2022 20:20:03: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX10855782/SRX10855782.05_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 20:20:03: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX10855782/SRX10855782.05_summits.bed INFO @ Tue, 02 Aug 2022 20:20:03: Done! pass1 - making usageList (14 chroms): 2 millis pass2 - checking and writing primary data (2680 records, 4 fields): 7 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 20:20:07: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 20:20:15: 41000000 INFO @ Tue, 02 Aug 2022 20:20:31: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX10855782/SRX10855782.10_peaks.xls INFO @ Tue, 02 Aug 2022 20:20:31: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX10855782/SRX10855782.10_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 20:20:31: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX10855782/SRX10855782.10_summits.bed INFO @ Tue, 02 Aug 2022 20:20:31: Done! pass1 - making usageList (14 chroms): 3 millis pass2 - checking and writing primary data (889 records, 4 fields): 5 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 20:20:32: 42000000 INFO @ Tue, 02 Aug 2022 20:20:49: 43000000 INFO @ Tue, 02 Aug 2022 20:20:53: #1 tag size is determined as 100 bps INFO @ Tue, 02 Aug 2022 20:20:53: #1 tag size = 100 INFO @ Tue, 02 Aug 2022 20:20:53: #1 total tags in treatment: 20599167 INFO @ Tue, 02 Aug 2022 20:20:53: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 20:20:53: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 20:20:54: #1 tags after filtering in treatment: 15077164 INFO @ Tue, 02 Aug 2022 20:20:54: #1 Redundant rate of treatment: 0.27 INFO @ Tue, 02 Aug 2022 20:20:54: #1 finished! INFO @ Tue, 02 Aug 2022 20:20:54: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 20:20:54: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 20:20:55: #2 number of paired peaks: 228 WARNING @ Tue, 02 Aug 2022 20:20:55: Fewer paired peaks (228) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 228 pairs to build model! INFO @ Tue, 02 Aug 2022 20:20:55: start model_add_line... INFO @ Tue, 02 Aug 2022 20:20:55: start X-correlation... INFO @ Tue, 02 Aug 2022 20:20:55: end of X-cor INFO @ Tue, 02 Aug 2022 20:20:55: #2 finished! INFO @ Tue, 02 Aug 2022 20:20:55: #2 predicted fragment length is 119 bps INFO @ Tue, 02 Aug 2022 20:20:55: #2 alternative fragment length(s) may be 1,119,141 bps INFO @ Tue, 02 Aug 2022 20:20:55: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX10855782/SRX10855782.20_model.r WARNING @ Tue, 02 Aug 2022 20:20:55: #2 Since the d (119) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 20:20:55: #2 You may need to consider one of the other alternative d(s): 1,119,141 WARNING @ Tue, 02 Aug 2022 20:20:55: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 20:20:55: #3 Call peaks... INFO @ Tue, 02 Aug 2022 20:20:55: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 20:21:41: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 20:22:06: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX10855782/SRX10855782.20_peaks.xls INFO @ Tue, 02 Aug 2022 20:22:06: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX10855782/SRX10855782.20_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 20:22:06: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX10855782/SRX10855782.20_summits.bed INFO @ Tue, 02 Aug 2022 20:22:06: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (243 records, 4 fields): 2 millis CompletedMACS2peakCalling