Job ID = 16440066 SRX = SRX10855780 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 33501458 spots for SRR14509967/SRR14509967.sra Written 33501458 spots for SRR14509967/SRR14509967.sra fastq に変換しました。 bowtie でマッピング中... Your job 16441472 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 02:12:05 33501458 reads; of these: 33501458 (100.00%) were paired; of these: 2880053 (8.60%) aligned concordantly 0 times 21784647 (65.03%) aligned concordantly exactly 1 time 8836758 (26.38%) aligned concordantly >1 times ---- 2880053 pairs aligned concordantly 0 times; of these: 567878 (19.72%) aligned discordantly 1 time ---- 2312175 pairs aligned 0 times concordantly or discordantly; of these: 4624350 mates make up the pairs; of these: 2655033 (57.41%) aligned 0 times 1304937 (28.22%) aligned exactly 1 time 664380 (14.37%) aligned >1 times 96.04% overall alignment rate Time searching: 02:12:05 Overall time: 02:12:05 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 28 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 5260460 / 31050088 = 0.1694 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 19:40:59: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX10855780/SRX10855780.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX10855780/SRX10855780.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX10855780/SRX10855780.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX10855780/SRX10855780.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 19:40:59: #1 read tag files... INFO @ Tue, 02 Aug 2022 19:40:59: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 19:41:10: 1000000 INFO @ Tue, 02 Aug 2022 19:41:21: 2000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 19:41:27: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX10855780/SRX10855780.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX10855780/SRX10855780.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX10855780/SRX10855780.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX10855780/SRX10855780.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 19:41:27: #1 read tag files... INFO @ Tue, 02 Aug 2022 19:41:27: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 19:41:32: 3000000 INFO @ Tue, 02 Aug 2022 19:41:38: 1000000 INFO @ Tue, 02 Aug 2022 19:41:43: 4000000 INFO @ Tue, 02 Aug 2022 19:41:50: 2000000 INFO @ Tue, 02 Aug 2022 19:41:54: 5000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 19:41:56: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX10855780/SRX10855780.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX10855780/SRX10855780.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX10855780/SRX10855780.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX10855780/SRX10855780.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 19:41:56: #1 read tag files... INFO @ Tue, 02 Aug 2022 19:41:56: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 19:42:01: 3000000 INFO @ Tue, 02 Aug 2022 19:42:05: 6000000 INFO @ Tue, 02 Aug 2022 19:42:08: 1000000 INFO @ Tue, 02 Aug 2022 19:42:13: 4000000 INFO @ Tue, 02 Aug 2022 19:42:15: 7000000 INFO @ Tue, 02 Aug 2022 19:42:19: 2000000 INFO @ Tue, 02 Aug 2022 19:42:24: 5000000 INFO @ Tue, 02 Aug 2022 19:42:27: 8000000 INFO @ Tue, 02 Aug 2022 19:42:30: 3000000 INFO @ Tue, 02 Aug 2022 19:42:35: 6000000 INFO @ Tue, 02 Aug 2022 19:42:38: 9000000 INFO @ Tue, 02 Aug 2022 19:42:42: 4000000 INFO @ Tue, 02 Aug 2022 19:42:46: 7000000 INFO @ Tue, 02 Aug 2022 19:42:49: 10000000 INFO @ Tue, 02 Aug 2022 19:42:53: 5000000 INFO @ Tue, 02 Aug 2022 19:42:57: 8000000 INFO @ Tue, 02 Aug 2022 19:42:59: 11000000 INFO @ Tue, 02 Aug 2022 19:43:04: 6000000 INFO @ Tue, 02 Aug 2022 19:43:07: 9000000 INFO @ Tue, 02 Aug 2022 19:43:09: 12000000 INFO @ Tue, 02 Aug 2022 19:43:15: 7000000 INFO @ Tue, 02 Aug 2022 19:43:18: 10000000 INFO @ Tue, 02 Aug 2022 19:43:19: 13000000 INFO @ Tue, 02 Aug 2022 19:43:25: 8000000 INFO @ Tue, 02 Aug 2022 19:43:29: 11000000 INFO @ Tue, 02 Aug 2022 19:43:30: 14000000 INFO @ Tue, 02 Aug 2022 19:43:34: 9000000 INFO @ Tue, 02 Aug 2022 19:43:40: 12000000 INFO @ Tue, 02 Aug 2022 19:43:40: 15000000 INFO @ Tue, 02 Aug 2022 19:43:44: 10000000 INFO @ Tue, 02 Aug 2022 19:43:51: 16000000 INFO @ Tue, 02 Aug 2022 19:43:51: 13000000 INFO @ Tue, 02 Aug 2022 19:43:54: 11000000 INFO @ Tue, 02 Aug 2022 19:44:01: 17000000 INFO @ Tue, 02 Aug 2022 19:44:02: 14000000 INFO @ Tue, 02 Aug 2022 19:44:03: 12000000 INFO @ Tue, 02 Aug 2022 19:44:11: 18000000 INFO @ Tue, 02 Aug 2022 19:44:13: 15000000 INFO @ Tue, 02 Aug 2022 19:44:14: 13000000 INFO @ Tue, 02 Aug 2022 19:44:21: 19000000 INFO @ Tue, 02 Aug 2022 19:44:24: 16000000 INFO @ Tue, 02 Aug 2022 19:44:24: 14000000 INFO @ Tue, 02 Aug 2022 19:44:32: 20000000 INFO @ Tue, 02 Aug 2022 19:44:34: 15000000 INFO @ Tue, 02 Aug 2022 19:44:34: 17000000 INFO @ Tue, 02 Aug 2022 19:44:41: 21000000 INFO @ Tue, 02 Aug 2022 19:44:43: 16000000 INFO @ Tue, 02 Aug 2022 19:44:45: 18000000 INFO @ Tue, 02 Aug 2022 19:44:52: 22000000 INFO @ Tue, 02 Aug 2022 19:44:53: 17000000 INFO @ Tue, 02 Aug 2022 19:44:55: 19000000 INFO @ Tue, 02 Aug 2022 19:45:02: 18000000 INFO @ Tue, 02 Aug 2022 19:45:03: 23000000 INFO @ Tue, 02 Aug 2022 19:45:06: 20000000 INFO @ Tue, 02 Aug 2022 19:45:12: 19000000 INFO @ Tue, 02 Aug 2022 19:45:13: 24000000 INFO @ Tue, 02 Aug 2022 19:45:17: 21000000 INFO @ Tue, 02 Aug 2022 19:45:22: 20000000 INFO @ Tue, 02 Aug 2022 19:45:24: 25000000 INFO @ Tue, 02 Aug 2022 19:45:28: 22000000 INFO @ Tue, 02 Aug 2022 19:45:32: 21000000 INFO @ Tue, 02 Aug 2022 19:45:35: 26000000 INFO @ Tue, 02 Aug 2022 19:45:38: 23000000 INFO @ Tue, 02 Aug 2022 19:45:42: 22000000 INFO @ Tue, 02 Aug 2022 19:45:45: 27000000 INFO @ Tue, 02 Aug 2022 19:45:49: 24000000 INFO @ Tue, 02 Aug 2022 19:45:53: 23000000 INFO @ Tue, 02 Aug 2022 19:45:56: 28000000 INFO @ Tue, 02 Aug 2022 19:46:00: 25000000 INFO @ Tue, 02 Aug 2022 19:46:04: 24000000 INFO @ Tue, 02 Aug 2022 19:46:07: 29000000 INFO @ Tue, 02 Aug 2022 19:46:11: 26000000 INFO @ Tue, 02 Aug 2022 19:46:14: 25000000 INFO @ Tue, 02 Aug 2022 19:46:18: 30000000 INFO @ Tue, 02 Aug 2022 19:46:22: 27000000 INFO @ Tue, 02 Aug 2022 19:46:24: 26000000 INFO @ Tue, 02 Aug 2022 19:46:28: 31000000 INFO @ Tue, 02 Aug 2022 19:46:32: 28000000 INFO @ Tue, 02 Aug 2022 19:46:34: 27000000 INFO @ Tue, 02 Aug 2022 19:46:39: 32000000 INFO @ Tue, 02 Aug 2022 19:46:43: 29000000 INFO @ Tue, 02 Aug 2022 19:46:44: 28000000 INFO @ Tue, 02 Aug 2022 19:46:49: 33000000 INFO @ Tue, 02 Aug 2022 19:46:54: 30000000 INFO @ Tue, 02 Aug 2022 19:46:55: 29000000 INFO @ Tue, 02 Aug 2022 19:46:59: 34000000 INFO @ Tue, 02 Aug 2022 19:47:05: 31000000 INFO @ Tue, 02 Aug 2022 19:47:05: 30000000 INFO @ Tue, 02 Aug 2022 19:47:09: 35000000 INFO @ Tue, 02 Aug 2022 19:47:16: 32000000 INFO @ Tue, 02 Aug 2022 19:47:16: 31000000 INFO @ Tue, 02 Aug 2022 19:47:20: 36000000 INFO @ Tue, 02 Aug 2022 19:47:26: 33000000 INFO @ Tue, 02 Aug 2022 19:47:27: 32000000 INFO @ Tue, 02 Aug 2022 19:47:31: 37000000 INFO @ Tue, 02 Aug 2022 19:47:37: 34000000 INFO @ Tue, 02 Aug 2022 19:47:38: 33000000 INFO @ Tue, 02 Aug 2022 19:47:42: 38000000 INFO @ Tue, 02 Aug 2022 19:47:47: 35000000 INFO @ Tue, 02 Aug 2022 19:47:49: 34000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 02 Aug 2022 19:47:53: 39000000 INFO @ Tue, 02 Aug 2022 19:47:58: 36000000 INFO @ Tue, 02 Aug 2022 19:48:00: 35000000 INFO @ Tue, 02 Aug 2022 19:48:04: 40000000 INFO @ Tue, 02 Aug 2022 19:48:08: 37000000 INFO @ Tue, 02 Aug 2022 19:48:11: 36000000 INFO @ Tue, 02 Aug 2022 19:48:14: 41000000 INFO @ Tue, 02 Aug 2022 19:48:19: 38000000 INFO @ Tue, 02 Aug 2022 19:48:23: 37000000 INFO @ Tue, 02 Aug 2022 19:48:25: 42000000 INFO @ Tue, 02 Aug 2022 19:48:30: 39000000 INFO @ Tue, 02 Aug 2022 19:48:33: 38000000 INFO @ Tue, 02 Aug 2022 19:48:36: 43000000 INFO @ Tue, 02 Aug 2022 19:48:40: 40000000 INFO @ Tue, 02 Aug 2022 19:48:44: 39000000 INFO @ Tue, 02 Aug 2022 19:48:46: 44000000 INFO @ Tue, 02 Aug 2022 19:48:51: 41000000 INFO @ Tue, 02 Aug 2022 19:48:56: 40000000 INFO @ Tue, 02 Aug 2022 19:48:57: 45000000 INFO @ Tue, 02 Aug 2022 19:49:01: 42000000 INFO @ Tue, 02 Aug 2022 19:49:07: 41000000 INFO @ Tue, 02 Aug 2022 19:49:09: 46000000 INFO @ Tue, 02 Aug 2022 19:49:12: 43000000 INFO @ Tue, 02 Aug 2022 19:49:17: 42000000 INFO @ Tue, 02 Aug 2022 19:49:20: 47000000 INFO @ Tue, 02 Aug 2022 19:49:23: 44000000 INFO @ Tue, 02 Aug 2022 19:49:28: 43000000 BigWig に変換しました。 INFO @ Tue, 02 Aug 2022 19:49:32: 48000000 INFO @ Tue, 02 Aug 2022 19:49:34: 45000000 INFO @ Tue, 02 Aug 2022 19:49:39: 44000000 INFO @ Tue, 02 Aug 2022 19:49:43: 49000000 INFO @ Tue, 02 Aug 2022 19:49:45: 46000000 INFO @ Tue, 02 Aug 2022 19:49:50: 45000000 INFO @ Tue, 02 Aug 2022 19:49:54: 50000000 INFO @ Tue, 02 Aug 2022 19:49:56: 47000000 INFO @ Tue, 02 Aug 2022 19:50:02: 46000000 INFO @ Tue, 02 Aug 2022 19:50:06: 51000000 INFO @ Tue, 02 Aug 2022 19:50:07: 48000000 INFO @ Tue, 02 Aug 2022 19:50:13: 47000000 INFO @ Tue, 02 Aug 2022 19:50:18: 52000000 INFO @ Tue, 02 Aug 2022 19:50:18: 49000000 INFO @ Tue, 02 Aug 2022 19:50:25: 48000000 INFO @ Tue, 02 Aug 2022 19:50:29: 50000000 INFO @ Tue, 02 Aug 2022 19:50:30: 53000000 INFO @ Tue, 02 Aug 2022 19:50:37: 49000000 INFO @ Tue, 02 Aug 2022 19:50:41: #1 tag size is determined as 100 bps INFO @ Tue, 02 Aug 2022 19:50:41: #1 tag size = 100 INFO @ Tue, 02 Aug 2022 19:50:41: #1 total tags in treatment: 25383957 INFO @ Tue, 02 Aug 2022 19:50:41: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 19:50:41: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 19:50:41: 51000000 INFO @ Tue, 02 Aug 2022 19:50:41: #1 tags after filtering in treatment: 17113282 INFO @ Tue, 02 Aug 2022 19:50:41: #1 Redundant rate of treatment: 0.33 INFO @ Tue, 02 Aug 2022 19:50:41: #1 finished! INFO @ Tue, 02 Aug 2022 19:50:41: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 19:50:41: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 19:50:43: #2 number of paired peaks: 340 WARNING @ Tue, 02 Aug 2022 19:50:43: Fewer paired peaks (340) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 340 pairs to build model! INFO @ Tue, 02 Aug 2022 19:50:43: start model_add_line... INFO @ Tue, 02 Aug 2022 19:50:43: start X-correlation... INFO @ Tue, 02 Aug 2022 19:50:43: end of X-cor INFO @ Tue, 02 Aug 2022 19:50:43: #2 finished! INFO @ Tue, 02 Aug 2022 19:50:43: #2 predicted fragment length is 94 bps INFO @ Tue, 02 Aug 2022 19:50:43: #2 alternative fragment length(s) may be 1,53,94,99,125,154,180 bps INFO @ Tue, 02 Aug 2022 19:50:43: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX10855780/SRX10855780.05_model.r WARNING @ Tue, 02 Aug 2022 19:50:43: #2 Since the d (94) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 19:50:43: #2 You may need to consider one of the other alternative d(s): 1,53,94,99,125,154,180 WARNING @ Tue, 02 Aug 2022 19:50:43: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 19:50:43: #3 Call peaks... INFO @ Tue, 02 Aug 2022 19:50:43: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 19:50:48: 50000000 INFO @ Tue, 02 Aug 2022 19:50:53: 52000000 INFO @ Tue, 02 Aug 2022 19:51:00: 51000000 INFO @ Tue, 02 Aug 2022 19:51:05: 53000000 INFO @ Tue, 02 Aug 2022 19:51:10: 52000000 INFO @ Tue, 02 Aug 2022 19:51:15: #1 tag size is determined as 100 bps INFO @ Tue, 02 Aug 2022 19:51:15: #1 tag size = 100 INFO @ Tue, 02 Aug 2022 19:51:15: #1 total tags in treatment: 25383957 INFO @ Tue, 02 Aug 2022 19:51:15: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 19:51:15: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 19:51:16: #1 tags after filtering in treatment: 17113282 INFO @ Tue, 02 Aug 2022 19:51:16: #1 Redundant rate of treatment: 0.33 INFO @ Tue, 02 Aug 2022 19:51:16: #1 finished! INFO @ Tue, 02 Aug 2022 19:51:16: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 19:51:16: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 19:51:17: #2 number of paired peaks: 340 WARNING @ Tue, 02 Aug 2022 19:51:17: Fewer paired peaks (340) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 340 pairs to build model! INFO @ Tue, 02 Aug 2022 19:51:17: start model_add_line... INFO @ Tue, 02 Aug 2022 19:51:17: start X-correlation... INFO @ Tue, 02 Aug 2022 19:51:17: end of X-cor INFO @ Tue, 02 Aug 2022 19:51:17: #2 finished! INFO @ Tue, 02 Aug 2022 19:51:17: #2 predicted fragment length is 94 bps INFO @ Tue, 02 Aug 2022 19:51:17: #2 alternative fragment length(s) may be 1,53,94,99,125,154,180 bps INFO @ Tue, 02 Aug 2022 19:51:17: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX10855780/SRX10855780.10_model.r WARNING @ Tue, 02 Aug 2022 19:51:17: #2 Since the d (94) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 19:51:17: #2 You may need to consider one of the other alternative d(s): 1,53,94,99,125,154,180 WARNING @ Tue, 02 Aug 2022 19:51:17: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 19:51:17: #3 Call peaks... INFO @ Tue, 02 Aug 2022 19:51:17: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 19:51:20: 53000000 INFO @ Tue, 02 Aug 2022 19:51:29: #1 tag size is determined as 100 bps INFO @ Tue, 02 Aug 2022 19:51:29: #1 tag size = 100 INFO @ Tue, 02 Aug 2022 19:51:29: #1 total tags in treatment: 25383957 INFO @ Tue, 02 Aug 2022 19:51:29: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 19:51:29: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 19:51:30: #1 tags after filtering in treatment: 17113282 INFO @ Tue, 02 Aug 2022 19:51:30: #1 Redundant rate of treatment: 0.33 INFO @ Tue, 02 Aug 2022 19:51:30: #1 finished! INFO @ Tue, 02 Aug 2022 19:51:30: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 19:51:30: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 19:51:31: #2 number of paired peaks: 340 WARNING @ Tue, 02 Aug 2022 19:51:31: Fewer paired peaks (340) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 340 pairs to build model! INFO @ Tue, 02 Aug 2022 19:51:31: start model_add_line... INFO @ Tue, 02 Aug 2022 19:51:31: start X-correlation... INFO @ Tue, 02 Aug 2022 19:51:31: end of X-cor INFO @ Tue, 02 Aug 2022 19:51:31: #2 finished! INFO @ Tue, 02 Aug 2022 19:51:31: #2 predicted fragment length is 94 bps INFO @ Tue, 02 Aug 2022 19:51:31: #2 alternative fragment length(s) may be 1,53,94,99,125,154,180 bps INFO @ Tue, 02 Aug 2022 19:51:31: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX10855780/SRX10855780.20_model.r WARNING @ Tue, 02 Aug 2022 19:51:31: #2 Since the d (94) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 19:51:31: #2 You may need to consider one of the other alternative d(s): 1,53,94,99,125,154,180 WARNING @ Tue, 02 Aug 2022 19:51:31: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 19:51:31: #3 Call peaks... INFO @ Tue, 02 Aug 2022 19:51:31: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 19:51:35: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 19:52:00: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX10855780/SRX10855780.05_peaks.xls INFO @ Tue, 02 Aug 2022 19:52:00: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX10855780/SRX10855780.05_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 19:52:00: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX10855780/SRX10855780.05_summits.bed INFO @ Tue, 02 Aug 2022 19:52:00: Done! pass1 - making usageList (14 chroms): 3 millis pass2 - checking and writing primary data (2775 records, 4 fields): 7 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 19:52:04: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 19:52:17: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 19:52:28: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX10855780/SRX10855780.10_peaks.xls INFO @ Tue, 02 Aug 2022 19:52:28: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX10855780/SRX10855780.10_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 19:52:28: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX10855780/SRX10855780.10_summits.bed INFO @ Tue, 02 Aug 2022 19:52:28: Done! pass1 - making usageList (9 chroms): 2 millis pass2 - checking and writing primary data (723 records, 4 fields): 4 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 19:52:42: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX10855780/SRX10855780.20_peaks.xls INFO @ Tue, 02 Aug 2022 19:52:42: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX10855780/SRX10855780.20_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 19:52:42: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX10855780/SRX10855780.20_summits.bed INFO @ Tue, 02 Aug 2022 19:52:42: Done! pass1 - making usageList (4 chroms): 1 millis pass2 - checking and writing primary data (172 records, 4 fields): 3 millis CompletedMACS2peakCalling