Job ID = 14170313 SRX = SRX10706040 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 36632699 spots for SRR14352192/SRR14352192.sra Written 36632699 spots for SRR14352192/SRR14352192.sra fastq に変換しました。 bowtie でマッピング中... Your job 14170965 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:59:08 36632699 reads; of these: 36632699 (100.00%) were paired; of these: 1997387 (5.45%) aligned concordantly 0 times 30796627 (84.07%) aligned concordantly exactly 1 time 3838685 (10.48%) aligned concordantly >1 times ---- 1997387 pairs aligned concordantly 0 times; of these: 250888 (12.56%) aligned discordantly 1 time ---- 1746499 pairs aligned 0 times concordantly or discordantly; of these: 3492998 mates make up the pairs; of these: 2789444 (79.86%) aligned 0 times 581602 (16.65%) aligned exactly 1 time 121952 (3.49%) aligned >1 times 96.19% overall alignment rate Time searching: 00:59:08 Overall time: 00:59:08 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 48 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 1020615 / 7004855 = 0.1457 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 07:36:59: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX10706040/SRX10706040.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX10706040/SRX10706040.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX10706040/SRX10706040.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX10706040/SRX10706040.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 07:36:59: #1 read tag files... INFO @ Sat, 11 Dec 2021 07:36:59: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 07:37:06: 1000000 INFO @ Sat, 11 Dec 2021 07:37:13: 2000000 INFO @ Sat, 11 Dec 2021 07:37:20: 3000000 INFO @ Sat, 11 Dec 2021 07:37:27: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 07:37:29: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX10706040/SRX10706040.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX10706040/SRX10706040.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX10706040/SRX10706040.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX10706040/SRX10706040.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 07:37:29: #1 read tag files... INFO @ Sat, 11 Dec 2021 07:37:29: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 07:37:34: 5000000 INFO @ Sat, 11 Dec 2021 07:37:36: 1000000 INFO @ Sat, 11 Dec 2021 07:37:41: 6000000 INFO @ Sat, 11 Dec 2021 07:37:43: 2000000 INFO @ Sat, 11 Dec 2021 07:37:48: 7000000 INFO @ Sat, 11 Dec 2021 07:37:50: 3000000 INFO @ Sat, 11 Dec 2021 07:37:55: 8000000 INFO @ Sat, 11 Dec 2021 07:37:57: 4000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 07:37:59: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX10706040/SRX10706040.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX10706040/SRX10706040.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX10706040/SRX10706040.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX10706040/SRX10706040.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 07:37:59: #1 read tag files... INFO @ Sat, 11 Dec 2021 07:37:59: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 07:38:02: 9000000 INFO @ Sat, 11 Dec 2021 07:38:05: 5000000 INFO @ Sat, 11 Dec 2021 07:38:06: 1000000 INFO @ Sat, 11 Dec 2021 07:38:10: 10000000 INFO @ Sat, 11 Dec 2021 07:38:12: 6000000 INFO @ Sat, 11 Dec 2021 07:38:13: 2000000 INFO @ Sat, 11 Dec 2021 07:38:18: 11000000 INFO @ Sat, 11 Dec 2021 07:38:20: 7000000 INFO @ Sat, 11 Dec 2021 07:38:20: 3000000 INFO @ Sat, 11 Dec 2021 07:38:25: 12000000 INFO @ Sat, 11 Dec 2021 07:38:27: 8000000 INFO @ Sat, 11 Dec 2021 07:38:28: 4000000 INFO @ Sat, 11 Dec 2021 07:38:33: 13000000 INFO @ Sat, 11 Dec 2021 07:38:35: 9000000 INFO @ Sat, 11 Dec 2021 07:38:35: 5000000 INFO @ Sat, 11 Dec 2021 07:38:40: 14000000 INFO @ Sat, 11 Dec 2021 07:38:42: 10000000 INFO @ Sat, 11 Dec 2021 07:38:42: 6000000 INFO @ Sat, 11 Dec 2021 07:38:47: 15000000 INFO @ Sat, 11 Dec 2021 07:38:49: 11000000 INFO @ Sat, 11 Dec 2021 07:38:49: 7000000 INFO @ Sat, 11 Dec 2021 07:38:55: 16000000 INFO @ Sat, 11 Dec 2021 07:38:56: 12000000 INFO @ Sat, 11 Dec 2021 07:38:56: 8000000 INFO @ Sat, 11 Dec 2021 07:39:03: 13000000 INFO @ Sat, 11 Dec 2021 07:39:03: 17000000 INFO @ Sat, 11 Dec 2021 07:39:03: 9000000 INFO @ Sat, 11 Dec 2021 07:39:09: 14000000 INFO @ Sat, 11 Dec 2021 07:39:10: 10000000 INFO @ Sat, 11 Dec 2021 07:39:10: 18000000 INFO @ Sat, 11 Dec 2021 07:39:16: 15000000 INFO @ Sat, 11 Dec 2021 07:39:17: 11000000 INFO @ Sat, 11 Dec 2021 07:39:18: 19000000 INFO @ Sat, 11 Dec 2021 07:39:23: 16000000 INFO @ Sat, 11 Dec 2021 07:39:24: 12000000 INFO @ Sat, 11 Dec 2021 07:39:25: 20000000 INFO @ Sat, 11 Dec 2021 07:39:30: 17000000 INFO @ Sat, 11 Dec 2021 07:39:31: 13000000 INFO @ Sat, 11 Dec 2021 07:39:32: 21000000 INFO @ Sat, 11 Dec 2021 07:39:37: 18000000 INFO @ Sat, 11 Dec 2021 07:39:38: 14000000 INFO @ Sat, 11 Dec 2021 07:39:39: 22000000 INFO @ Sat, 11 Dec 2021 07:39:44: 19000000 INFO @ Sat, 11 Dec 2021 07:39:44: 15000000 INFO @ Sat, 11 Dec 2021 07:39:46: 23000000 INFO @ Sat, 11 Dec 2021 07:39:51: 16000000 INFO @ Sat, 11 Dec 2021 07:39:51: 20000000 INFO @ Sat, 11 Dec 2021 07:39:53: 24000000 INFO @ Sat, 11 Dec 2021 07:39:58: 17000000 INFO @ Sat, 11 Dec 2021 07:39:59: 21000000 INFO @ Sat, 11 Dec 2021 07:40:01: 25000000 INFO @ Sat, 11 Dec 2021 07:40:05: 18000000 INFO @ Sat, 11 Dec 2021 07:40:06: 22000000 INFO @ Sat, 11 Dec 2021 07:40:09: 26000000 INFO @ Sat, 11 Dec 2021 07:40:12: 19000000 INFO @ Sat, 11 Dec 2021 07:40:13: 23000000 INFO @ Sat, 11 Dec 2021 07:40:16: 27000000 INFO @ Sat, 11 Dec 2021 07:40:20: 20000000 INFO @ Sat, 11 Dec 2021 07:40:20: 24000000 INFO @ Sat, 11 Dec 2021 07:40:24: 28000000 INFO @ Sat, 11 Dec 2021 07:40:27: 21000000 INFO @ Sat, 11 Dec 2021 07:40:28: 25000000 INFO @ Sat, 11 Dec 2021 07:40:32: 29000000 INFO @ Sat, 11 Dec 2021 07:40:34: 22000000 INFO @ Sat, 11 Dec 2021 07:40:35: 26000000 INFO @ Sat, 11 Dec 2021 07:40:40: 30000000 INFO @ Sat, 11 Dec 2021 07:40:41: 23000000 INFO @ Sat, 11 Dec 2021 07:40:42: 27000000 INFO @ Sat, 11 Dec 2021 07:40:47: 31000000 INFO @ Sat, 11 Dec 2021 07:40:48: 24000000 INFO @ Sat, 11 Dec 2021 07:40:49: 28000000 INFO @ Sat, 11 Dec 2021 07:40:55: 32000000 INFO @ Sat, 11 Dec 2021 07:40:55: 25000000 INFO @ Sat, 11 Dec 2021 07:40:57: 29000000 INFO @ Sat, 11 Dec 2021 07:41:02: 33000000 INFO @ Sat, 11 Dec 2021 07:41:02: 26000000 INFO @ Sat, 11 Dec 2021 07:41:04: 30000000 INFO @ Sat, 11 Dec 2021 07:41:09: 34000000 INFO @ Sat, 11 Dec 2021 07:41:10: 27000000 INFO @ Sat, 11 Dec 2021 07:41:11: 31000000 INFO @ Sat, 11 Dec 2021 07:41:17: 35000000 INFO @ Sat, 11 Dec 2021 07:41:17: 28000000 INFO @ Sat, 11 Dec 2021 07:41:19: 32000000 INFO @ Sat, 11 Dec 2021 07:41:24: 36000000 INFO @ Sat, 11 Dec 2021 07:41:24: 29000000 INFO @ Sat, 11 Dec 2021 07:41:26: 33000000 INFO @ Sat, 11 Dec 2021 07:41:32: 37000000 INFO @ Sat, 11 Dec 2021 07:41:32: 30000000 INFO @ Sat, 11 Dec 2021 07:41:33: 34000000 INFO @ Sat, 11 Dec 2021 07:41:39: 38000000 INFO @ Sat, 11 Dec 2021 07:41:39: 31000000 INFO @ Sat, 11 Dec 2021 07:41:40: 35000000 INFO @ Sat, 11 Dec 2021 07:41:46: 39000000 INFO @ Sat, 11 Dec 2021 07:41:46: 32000000 INFO @ Sat, 11 Dec 2021 07:41:47: 36000000 INFO @ Sat, 11 Dec 2021 07:41:54: 40000000 INFO @ Sat, 11 Dec 2021 07:41:54: 33000000 INFO @ Sat, 11 Dec 2021 07:41:55: 37000000 INFO @ Sat, 11 Dec 2021 07:42:01: 41000000 INFO @ Sat, 11 Dec 2021 07:42:01: 34000000 INFO @ Sat, 11 Dec 2021 07:42:02: 38000000 INFO @ Sat, 11 Dec 2021 07:42:08: 42000000 INFO @ Sat, 11 Dec 2021 07:42:09: 35000000 INFO @ Sat, 11 Dec 2021 07:42:09: 39000000 INFO @ Sat, 11 Dec 2021 07:42:16: 43000000 INFO @ Sat, 11 Dec 2021 07:42:16: 40000000 INFO @ Sat, 11 Dec 2021 07:42:16: 36000000 INFO @ Sat, 11 Dec 2021 07:42:23: 44000000 INFO @ Sat, 11 Dec 2021 07:42:23: 41000000 INFO @ Sat, 11 Dec 2021 07:42:24: 37000000 INFO @ Sat, 11 Dec 2021 07:42:30: 42000000 INFO @ Sat, 11 Dec 2021 07:42:30: 45000000 INFO @ Sat, 11 Dec 2021 07:42:31: 38000000 INFO @ Sat, 11 Dec 2021 07:42:38: 43000000 INFO @ Sat, 11 Dec 2021 07:42:38: 46000000 INFO @ Sat, 11 Dec 2021 07:42:38: 39000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 11 Dec 2021 07:42:45: 44000000 INFO @ Sat, 11 Dec 2021 07:42:45: 47000000 INFO @ Sat, 11 Dec 2021 07:42:46: 40000000 INFO @ Sat, 11 Dec 2021 07:42:52: 45000000 INFO @ Sat, 11 Dec 2021 07:42:53: 48000000 INFO @ Sat, 11 Dec 2021 07:42:53: 41000000 INFO @ Sat, 11 Dec 2021 07:42:59: 46000000 INFO @ Sat, 11 Dec 2021 07:43:00: 49000000 INFO @ Sat, 11 Dec 2021 07:43:00: 42000000 INFO @ Sat, 11 Dec 2021 07:43:06: 47000000 INFO @ Sat, 11 Dec 2021 07:43:07: 50000000 INFO @ Sat, 11 Dec 2021 07:43:08: 43000000 INFO @ Sat, 11 Dec 2021 07:43:13: 48000000 INFO @ Sat, 11 Dec 2021 07:43:15: 51000000 INFO @ Sat, 11 Dec 2021 07:43:15: 44000000 INFO @ Sat, 11 Dec 2021 07:43:21: 49000000 INFO @ Sat, 11 Dec 2021 07:43:22: 52000000 INFO @ Sat, 11 Dec 2021 07:43:23: 45000000 INFO @ Sat, 11 Dec 2021 07:43:28: 50000000 INFO @ Sat, 11 Dec 2021 07:43:30: 53000000 INFO @ Sat, 11 Dec 2021 07:43:30: 46000000 BigWig に変換しました。 INFO @ Sat, 11 Dec 2021 07:43:35: 51000000 INFO @ Sat, 11 Dec 2021 07:43:37: 54000000 INFO @ Sat, 11 Dec 2021 07:43:37: 47000000 INFO @ Sat, 11 Dec 2021 07:43:42: 52000000 INFO @ Sat, 11 Dec 2021 07:43:44: 55000000 INFO @ Sat, 11 Dec 2021 07:43:45: 48000000 INFO @ Sat, 11 Dec 2021 07:43:49: 53000000 INFO @ Sat, 11 Dec 2021 07:43:52: 56000000 INFO @ Sat, 11 Dec 2021 07:43:52: 49000000 INFO @ Sat, 11 Dec 2021 07:43:57: 54000000 INFO @ Sat, 11 Dec 2021 07:43:59: 57000000 INFO @ Sat, 11 Dec 2021 07:44:00: 50000000 INFO @ Sat, 11 Dec 2021 07:44:04: 55000000 INFO @ Sat, 11 Dec 2021 07:44:07: 58000000 INFO @ Sat, 11 Dec 2021 07:44:07: 51000000 INFO @ Sat, 11 Dec 2021 07:44:11: 56000000 INFO @ Sat, 11 Dec 2021 07:44:14: 52000000 INFO @ Sat, 11 Dec 2021 07:44:15: 59000000 INFO @ Sat, 11 Dec 2021 07:44:19: 57000000 INFO @ Sat, 11 Dec 2021 07:44:22: 53000000 INFO @ Sat, 11 Dec 2021 07:44:22: 60000000 INFO @ Sat, 11 Dec 2021 07:44:27: 58000000 INFO @ Sat, 11 Dec 2021 07:44:29: 54000000 INFO @ Sat, 11 Dec 2021 07:44:30: 61000000 INFO @ Sat, 11 Dec 2021 07:44:34: 59000000 INFO @ Sat, 11 Dec 2021 07:44:37: 55000000 INFO @ Sat, 11 Dec 2021 07:44:37: 62000000 INFO @ Sat, 11 Dec 2021 07:44:41: 60000000 INFO @ Sat, 11 Dec 2021 07:44:44: 56000000 INFO @ Sat, 11 Dec 2021 07:44:45: 63000000 INFO @ Sat, 11 Dec 2021 07:44:49: 61000000 INFO @ Sat, 11 Dec 2021 07:44:52: 57000000 INFO @ Sat, 11 Dec 2021 07:44:52: 64000000 INFO @ Sat, 11 Dec 2021 07:44:57: 62000000 INFO @ Sat, 11 Dec 2021 07:44:59: 58000000 INFO @ Sat, 11 Dec 2021 07:45:00: 65000000 INFO @ Sat, 11 Dec 2021 07:45:04: 63000000 INFO @ Sat, 11 Dec 2021 07:45:07: 59000000 INFO @ Sat, 11 Dec 2021 07:45:07: 66000000 INFO @ Sat, 11 Dec 2021 07:45:11: 64000000 INFO @ Sat, 11 Dec 2021 07:45:15: 60000000 INFO @ Sat, 11 Dec 2021 07:45:15: 67000000 INFO @ Sat, 11 Dec 2021 07:45:19: 65000000 INFO @ Sat, 11 Dec 2021 07:45:22: 61000000 INFO @ Sat, 11 Dec 2021 07:45:22: 68000000 INFO @ Sat, 11 Dec 2021 07:45:26: 66000000 INFO @ Sat, 11 Dec 2021 07:45:26: #1 tag size is determined as 117 bps INFO @ Sat, 11 Dec 2021 07:45:26: #1 tag size = 117 INFO @ Sat, 11 Dec 2021 07:45:26: #1 total tags in treatment: 33620748 INFO @ Sat, 11 Dec 2021 07:45:26: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 07:45:26: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 07:45:27: #1 tags after filtering in treatment: 18462675 INFO @ Sat, 11 Dec 2021 07:45:27: #1 Redundant rate of treatment: 0.45 INFO @ Sat, 11 Dec 2021 07:45:27: #1 finished! INFO @ Sat, 11 Dec 2021 07:45:27: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 07:45:27: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 07:45:28: #2 number of paired peaks: 240 WARNING @ Sat, 11 Dec 2021 07:45:28: Fewer paired peaks (240) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 240 pairs to build model! INFO @ Sat, 11 Dec 2021 07:45:28: start model_add_line... INFO @ Sat, 11 Dec 2021 07:45:28: start X-correlation... INFO @ Sat, 11 Dec 2021 07:45:28: end of X-cor INFO @ Sat, 11 Dec 2021 07:45:28: #2 finished! INFO @ Sat, 11 Dec 2021 07:45:28: #2 predicted fragment length is 100 bps INFO @ Sat, 11 Dec 2021 07:45:28: #2 alternative fragment length(s) may be 100 bps INFO @ Sat, 11 Dec 2021 07:45:28: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX10706040/SRX10706040.05_model.r WARNING @ Sat, 11 Dec 2021 07:45:28: #2 Since the d (100) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Dec 2021 07:45:28: #2 You may need to consider one of the other alternative d(s): 100 WARNING @ Sat, 11 Dec 2021 07:45:28: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Dec 2021 07:45:28: #3 Call peaks... INFO @ Sat, 11 Dec 2021 07:45:28: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 07:45:29: 62000000 INFO @ Sat, 11 Dec 2021 07:45:33: 67000000 INFO @ Sat, 11 Dec 2021 07:45:37: 63000000 INFO @ Sat, 11 Dec 2021 07:45:41: 68000000 INFO @ Sat, 11 Dec 2021 07:45:44: 64000000 INFO @ Sat, 11 Dec 2021 07:45:44: #1 tag size is determined as 117 bps INFO @ Sat, 11 Dec 2021 07:45:44: #1 tag size = 117 INFO @ Sat, 11 Dec 2021 07:45:44: #1 total tags in treatment: 33620748 INFO @ Sat, 11 Dec 2021 07:45:44: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 07:45:44: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 07:45:45: #1 tags after filtering in treatment: 18462675 INFO @ Sat, 11 Dec 2021 07:45:45: #1 Redundant rate of treatment: 0.45 INFO @ Sat, 11 Dec 2021 07:45:45: #1 finished! INFO @ Sat, 11 Dec 2021 07:45:45: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 07:45:45: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 07:45:46: #2 number of paired peaks: 240 WARNING @ Sat, 11 Dec 2021 07:45:46: Fewer paired peaks (240) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 240 pairs to build model! INFO @ Sat, 11 Dec 2021 07:45:46: start model_add_line... INFO @ Sat, 11 Dec 2021 07:45:46: start X-correlation... INFO @ Sat, 11 Dec 2021 07:45:46: end of X-cor INFO @ Sat, 11 Dec 2021 07:45:46: #2 finished! INFO @ Sat, 11 Dec 2021 07:45:46: #2 predicted fragment length is 100 bps INFO @ Sat, 11 Dec 2021 07:45:46: #2 alternative fragment length(s) may be 100 bps INFO @ Sat, 11 Dec 2021 07:45:46: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX10706040/SRX10706040.10_model.r WARNING @ Sat, 11 Dec 2021 07:45:46: #2 Since the d (100) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Dec 2021 07:45:46: #2 You may need to consider one of the other alternative d(s): 100 WARNING @ Sat, 11 Dec 2021 07:45:46: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Dec 2021 07:45:46: #3 Call peaks... INFO @ Sat, 11 Dec 2021 07:45:46: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 07:45:51: 65000000 INFO @ Sat, 11 Dec 2021 07:45:58: 66000000 INFO @ Sat, 11 Dec 2021 07:46:04: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 07:46:04: 67000000 INFO @ Sat, 11 Dec 2021 07:46:11: 68000000 INFO @ Sat, 11 Dec 2021 07:46:15: #1 tag size is determined as 117 bps INFO @ Sat, 11 Dec 2021 07:46:15: #1 tag size = 117 INFO @ Sat, 11 Dec 2021 07:46:15: #1 total tags in treatment: 33620748 INFO @ Sat, 11 Dec 2021 07:46:15: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 07:46:15: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 07:46:15: #1 tags after filtering in treatment: 18462675 INFO @ Sat, 11 Dec 2021 07:46:15: #1 Redundant rate of treatment: 0.45 INFO @ Sat, 11 Dec 2021 07:46:15: #1 finished! INFO @ Sat, 11 Dec 2021 07:46:15: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 07:46:15: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 07:46:16: #2 number of paired peaks: 240 WARNING @ Sat, 11 Dec 2021 07:46:16: Fewer paired peaks (240) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 240 pairs to build model! INFO @ Sat, 11 Dec 2021 07:46:16: start model_add_line... INFO @ Sat, 11 Dec 2021 07:46:17: start X-correlation... INFO @ Sat, 11 Dec 2021 07:46:17: end of X-cor INFO @ Sat, 11 Dec 2021 07:46:17: #2 finished! INFO @ Sat, 11 Dec 2021 07:46:17: #2 predicted fragment length is 100 bps INFO @ Sat, 11 Dec 2021 07:46:17: #2 alternative fragment length(s) may be 100 bps INFO @ Sat, 11 Dec 2021 07:46:17: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX10706040/SRX10706040.20_model.r WARNING @ Sat, 11 Dec 2021 07:46:17: #2 Since the d (100) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Dec 2021 07:46:17: #2 You may need to consider one of the other alternative d(s): 100 WARNING @ Sat, 11 Dec 2021 07:46:17: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Dec 2021 07:46:17: #3 Call peaks... INFO @ Sat, 11 Dec 2021 07:46:17: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 07:46:20: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 07:46:24: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX10706040/SRX10706040.05_peaks.xls INFO @ Sat, 11 Dec 2021 07:46:24: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX10706040/SRX10706040.05_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 07:46:24: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX10706040/SRX10706040.05_summits.bed INFO @ Sat, 11 Dec 2021 07:46:24: Done! pass1 - making usageList (14 chroms): 4 millis pass2 - checking and writing primary data (26568 records, 4 fields): 24 millis CompletedMACS2peakCalling INFO @ Sat, 11 Dec 2021 07:46:37: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX10706040/SRX10706040.10_peaks.xls INFO @ Sat, 11 Dec 2021 07:46:37: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX10706040/SRX10706040.10_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 07:46:37: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX10706040/SRX10706040.10_summits.bed INFO @ Sat, 11 Dec 2021 07:46:37: Done! pass1 - making usageList (14 chroms): 2 millis pass2 - checking and writing primary data (11991 records, 4 fields): 12 millis CompletedMACS2peakCalling INFO @ Sat, 11 Dec 2021 07:46:50: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 07:47:06: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX10706040/SRX10706040.20_peaks.xls INFO @ Sat, 11 Dec 2021 07:47:06: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX10706040/SRX10706040.20_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 07:47:06: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX10706040/SRX10706040.20_summits.bed INFO @ Sat, 11 Dec 2021 07:47:06: Done! pass1 - making usageList (12 chroms): 1 millis pass2 - checking and writing primary data (3071 records, 4 fields): 4 millis CompletedMACS2peakCalling