Job ID = 16440016 SRX = SRX10447585 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 26796172 spots for SRR14073300/SRR14073300.sra Written 26796172 spots for SRR14073300/SRR14073300.sra fastq に変換しました。 bowtie でマッピング中... Your job 16440177 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:41:43 26796172 reads; of these: 26796172 (100.00%) were paired; of these: 1397426 (5.22%) aligned concordantly 0 times 23247126 (86.76%) aligned concordantly exactly 1 time 2151620 (8.03%) aligned concordantly >1 times ---- 1397426 pairs aligned concordantly 0 times; of these: 156024 (11.17%) aligned discordantly 1 time ---- 1241402 pairs aligned 0 times concordantly or discordantly; of these: 2482804 mates make up the pairs; of these: 2083306 (83.91%) aligned 0 times 334034 (13.45%) aligned exactly 1 time 65464 (2.64%) aligned >1 times 96.11% overall alignment rate Time searching: 00:41:43 Overall time: 00:41:43 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 24 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 3737764 / 25528228 = 0.1464 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 17:44:53: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX10447585/SRX10447585.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX10447585/SRX10447585.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX10447585/SRX10447585.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX10447585/SRX10447585.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 17:44:53: #1 read tag files... INFO @ Tue, 02 Aug 2022 17:44:53: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 17:45:03: 1000000 INFO @ Tue, 02 Aug 2022 17:45:13: 2000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 17:45:21: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX10447585/SRX10447585.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX10447585/SRX10447585.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX10447585/SRX10447585.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX10447585/SRX10447585.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 17:45:21: #1 read tag files... INFO @ Tue, 02 Aug 2022 17:45:21: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 17:45:24: 3000000 INFO @ Tue, 02 Aug 2022 17:45:32: 1000000 INFO @ Tue, 02 Aug 2022 17:45:36: 4000000 INFO @ Tue, 02 Aug 2022 17:45:42: 2000000 INFO @ Tue, 02 Aug 2022 17:45:46: 5000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 17:45:51: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX10447585/SRX10447585.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX10447585/SRX10447585.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX10447585/SRX10447585.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX10447585/SRX10447585.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 17:45:51: #1 read tag files... INFO @ Tue, 02 Aug 2022 17:45:51: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 17:45:53: 3000000 INFO @ Tue, 02 Aug 2022 17:45:56: 6000000 INFO @ Tue, 02 Aug 2022 17:46:01: 1000000 INFO @ Tue, 02 Aug 2022 17:46:04: 4000000 INFO @ Tue, 02 Aug 2022 17:46:06: 7000000 INFO @ Tue, 02 Aug 2022 17:46:12: 2000000 INFO @ Tue, 02 Aug 2022 17:46:15: 5000000 INFO @ Tue, 02 Aug 2022 17:46:17: 8000000 INFO @ Tue, 02 Aug 2022 17:46:22: 3000000 INFO @ Tue, 02 Aug 2022 17:46:25: 6000000 INFO @ Tue, 02 Aug 2022 17:46:27: 9000000 INFO @ Tue, 02 Aug 2022 17:46:32: 4000000 INFO @ Tue, 02 Aug 2022 17:46:35: 7000000 INFO @ Tue, 02 Aug 2022 17:46:37: 10000000 INFO @ Tue, 02 Aug 2022 17:46:44: 5000000 INFO @ Tue, 02 Aug 2022 17:46:47: 8000000 INFO @ Tue, 02 Aug 2022 17:46:49: 11000000 INFO @ Tue, 02 Aug 2022 17:46:55: 6000000 INFO @ Tue, 02 Aug 2022 17:46:59: 9000000 INFO @ Tue, 02 Aug 2022 17:46:59: 12000000 INFO @ Tue, 02 Aug 2022 17:47:07: 7000000 INFO @ Tue, 02 Aug 2022 17:47:09: 13000000 INFO @ Tue, 02 Aug 2022 17:47:10: 10000000 INFO @ Tue, 02 Aug 2022 17:47:18: 8000000 INFO @ Tue, 02 Aug 2022 17:47:20: 14000000 INFO @ Tue, 02 Aug 2022 17:47:21: 11000000 INFO @ Tue, 02 Aug 2022 17:47:28: 9000000 INFO @ Tue, 02 Aug 2022 17:47:32: 15000000 INFO @ Tue, 02 Aug 2022 17:47:32: 12000000 INFO @ Tue, 02 Aug 2022 17:47:38: 10000000 INFO @ Tue, 02 Aug 2022 17:47:42: 16000000 INFO @ Tue, 02 Aug 2022 17:47:44: 13000000 INFO @ Tue, 02 Aug 2022 17:47:50: 11000000 INFO @ Tue, 02 Aug 2022 17:47:55: 17000000 INFO @ Tue, 02 Aug 2022 17:47:56: 14000000 INFO @ Tue, 02 Aug 2022 17:48:00: 12000000 INFO @ Tue, 02 Aug 2022 17:48:06: 15000000 INFO @ Tue, 02 Aug 2022 17:48:06: 18000000 INFO @ Tue, 02 Aug 2022 17:48:11: 13000000 INFO @ Tue, 02 Aug 2022 17:48:16: 16000000 INFO @ Tue, 02 Aug 2022 17:48:17: 19000000 INFO @ Tue, 02 Aug 2022 17:48:22: 14000000 INFO @ Tue, 02 Aug 2022 17:48:27: 17000000 INFO @ Tue, 02 Aug 2022 17:48:28: 20000000 INFO @ Tue, 02 Aug 2022 17:48:33: 15000000 INFO @ Tue, 02 Aug 2022 17:48:37: 18000000 INFO @ Tue, 02 Aug 2022 17:48:41: 21000000 INFO @ Tue, 02 Aug 2022 17:48:43: 16000000 INFO @ Tue, 02 Aug 2022 17:48:48: 19000000 INFO @ Tue, 02 Aug 2022 17:48:52: 22000000 INFO @ Tue, 02 Aug 2022 17:48:54: 17000000 INFO @ Tue, 02 Aug 2022 17:48:59: 20000000 INFO @ Tue, 02 Aug 2022 17:49:03: 23000000 INFO @ Tue, 02 Aug 2022 17:49:05: 18000000 INFO @ Tue, 02 Aug 2022 17:49:09: 21000000 INFO @ Tue, 02 Aug 2022 17:49:14: 19000000 INFO @ Tue, 02 Aug 2022 17:49:15: 24000000 INFO @ Tue, 02 Aug 2022 17:49:19: 22000000 INFO @ Tue, 02 Aug 2022 17:49:23: 20000000 INFO @ Tue, 02 Aug 2022 17:49:26: 25000000 INFO @ Tue, 02 Aug 2022 17:49:28: 23000000 INFO @ Tue, 02 Aug 2022 17:49:32: 21000000 INFO @ Tue, 02 Aug 2022 17:49:38: 26000000 INFO @ Tue, 02 Aug 2022 17:49:38: 24000000 INFO @ Tue, 02 Aug 2022 17:49:42: 22000000 INFO @ Tue, 02 Aug 2022 17:49:47: 25000000 INFO @ Tue, 02 Aug 2022 17:49:49: 27000000 INFO @ Tue, 02 Aug 2022 17:49:51: 23000000 INFO @ Tue, 02 Aug 2022 17:49:56: 26000000 INFO @ Tue, 02 Aug 2022 17:50:00: 28000000 INFO @ Tue, 02 Aug 2022 17:50:01: 24000000 INFO @ Tue, 02 Aug 2022 17:50:06: 27000000 INFO @ Tue, 02 Aug 2022 17:50:10: 25000000 INFO @ Tue, 02 Aug 2022 17:50:12: 29000000 INFO @ Tue, 02 Aug 2022 17:50:15: 28000000 INFO @ Tue, 02 Aug 2022 17:50:20: 26000000 INFO @ Tue, 02 Aug 2022 17:50:23: 30000000 INFO @ Tue, 02 Aug 2022 17:50:25: 29000000 INFO @ Tue, 02 Aug 2022 17:50:29: 27000000 INFO @ Tue, 02 Aug 2022 17:50:34: 31000000 INFO @ Tue, 02 Aug 2022 17:50:35: 30000000 INFO @ Tue, 02 Aug 2022 17:50:38: 28000000 INFO @ Tue, 02 Aug 2022 17:50:45: 31000000 INFO @ Tue, 02 Aug 2022 17:50:45: 32000000 INFO @ Tue, 02 Aug 2022 17:50:49: 29000000 INFO @ Tue, 02 Aug 2022 17:50:55: 32000000 INFO @ Tue, 02 Aug 2022 17:50:57: 33000000 INFO @ Tue, 02 Aug 2022 17:50:59: 30000000 INFO @ Tue, 02 Aug 2022 17:51:05: 33000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 02 Aug 2022 17:51:08: 34000000 INFO @ Tue, 02 Aug 2022 17:51:09: 31000000 INFO @ Tue, 02 Aug 2022 17:51:14: 34000000 INFO @ Tue, 02 Aug 2022 17:51:17: 32000000 INFO @ Tue, 02 Aug 2022 17:51:20: 35000000 INFO @ Tue, 02 Aug 2022 17:51:23: 35000000 INFO @ Tue, 02 Aug 2022 17:51:27: 33000000 INFO @ Tue, 02 Aug 2022 17:51:31: 36000000 INFO @ Tue, 02 Aug 2022 17:51:33: 36000000 INFO @ Tue, 02 Aug 2022 17:51:37: 34000000 INFO @ Tue, 02 Aug 2022 17:51:43: 37000000 INFO @ Tue, 02 Aug 2022 17:51:43: 37000000 INFO @ Tue, 02 Aug 2022 17:51:47: 35000000 INFO @ Tue, 02 Aug 2022 17:51:54: 38000000 INFO @ Tue, 02 Aug 2022 17:51:54: 38000000 INFO @ Tue, 02 Aug 2022 17:51:57: 36000000 INFO @ Tue, 02 Aug 2022 17:52:03: 39000000 INFO @ Tue, 02 Aug 2022 17:52:06: 39000000 INFO @ Tue, 02 Aug 2022 17:52:07: 37000000 INFO @ Tue, 02 Aug 2022 17:52:13: 40000000 INFO @ Tue, 02 Aug 2022 17:52:16: 38000000 INFO @ Tue, 02 Aug 2022 17:52:17: 40000000 INFO @ Tue, 02 Aug 2022 17:52:22: 41000000 INFO @ Tue, 02 Aug 2022 17:52:26: 39000000 BigWig に変換しました。 INFO @ Tue, 02 Aug 2022 17:52:28: 41000000 INFO @ Tue, 02 Aug 2022 17:52:33: 42000000 INFO @ Tue, 02 Aug 2022 17:52:36: 40000000 INFO @ Tue, 02 Aug 2022 17:52:40: 42000000 INFO @ Tue, 02 Aug 2022 17:52:43: 43000000 INFO @ Tue, 02 Aug 2022 17:52:46: 41000000 INFO @ Tue, 02 Aug 2022 17:52:52: 43000000 INFO @ Tue, 02 Aug 2022 17:52:54: 44000000 INFO @ Tue, 02 Aug 2022 17:52:54: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 17:52:54: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 17:52:54: #1 total tags in treatment: 21674525 INFO @ Tue, 02 Aug 2022 17:52:54: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 17:52:54: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 17:52:55: #1 tags after filtering in treatment: 13510885 INFO @ Tue, 02 Aug 2022 17:52:55: #1 Redundant rate of treatment: 0.38 INFO @ Tue, 02 Aug 2022 17:52:55: #1 finished! INFO @ Tue, 02 Aug 2022 17:52:55: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 17:52:55: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 17:52:56: #2 number of paired peaks: 550 WARNING @ Tue, 02 Aug 2022 17:52:56: Fewer paired peaks (550) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 550 pairs to build model! INFO @ Tue, 02 Aug 2022 17:52:56: start model_add_line... INFO @ Tue, 02 Aug 2022 17:52:56: 42000000 INFO @ Tue, 02 Aug 2022 17:52:56: start X-correlation... INFO @ Tue, 02 Aug 2022 17:52:57: end of X-cor INFO @ Tue, 02 Aug 2022 17:52:57: #2 finished! INFO @ Tue, 02 Aug 2022 17:52:57: #2 predicted fragment length is 84 bps INFO @ Tue, 02 Aug 2022 17:52:57: #2 alternative fragment length(s) may be 84 bps INFO @ Tue, 02 Aug 2022 17:52:57: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX10447585/SRX10447585.10_model.r WARNING @ Tue, 02 Aug 2022 17:52:57: #2 Since the d (84) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 17:52:57: #2 You may need to consider one of the other alternative d(s): 84 WARNING @ Tue, 02 Aug 2022 17:52:57: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 17:52:57: #3 Call peaks... INFO @ Tue, 02 Aug 2022 17:52:57: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 17:53:04: 44000000 INFO @ Tue, 02 Aug 2022 17:53:05: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 17:53:05: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 17:53:05: #1 total tags in treatment: 21674525 INFO @ Tue, 02 Aug 2022 17:53:05: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 17:53:05: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 17:53:05: #1 tags after filtering in treatment: 13510885 INFO @ Tue, 02 Aug 2022 17:53:05: #1 Redundant rate of treatment: 0.38 INFO @ Tue, 02 Aug 2022 17:53:05: #1 finished! INFO @ Tue, 02 Aug 2022 17:53:05: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 17:53:05: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 17:53:06: 43000000 INFO @ Tue, 02 Aug 2022 17:53:07: #2 number of paired peaks: 550 WARNING @ Tue, 02 Aug 2022 17:53:07: Fewer paired peaks (550) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 550 pairs to build model! INFO @ Tue, 02 Aug 2022 17:53:07: start model_add_line... INFO @ Tue, 02 Aug 2022 17:53:07: start X-correlation... INFO @ Tue, 02 Aug 2022 17:53:07: end of X-cor INFO @ Tue, 02 Aug 2022 17:53:07: #2 finished! INFO @ Tue, 02 Aug 2022 17:53:07: #2 predicted fragment length is 84 bps INFO @ Tue, 02 Aug 2022 17:53:07: #2 alternative fragment length(s) may be 84 bps INFO @ Tue, 02 Aug 2022 17:53:07: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX10447585/SRX10447585.05_model.r WARNING @ Tue, 02 Aug 2022 17:53:07: #2 Since the d (84) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 17:53:07: #2 You may need to consider one of the other alternative d(s): 84 WARNING @ Tue, 02 Aug 2022 17:53:07: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 17:53:07: #3 Call peaks... INFO @ Tue, 02 Aug 2022 17:53:07: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 17:53:15: 44000000 INFO @ Tue, 02 Aug 2022 17:53:15: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 17:53:15: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 17:53:15: #1 total tags in treatment: 21674525 INFO @ Tue, 02 Aug 2022 17:53:15: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 17:53:15: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 17:53:16: #1 tags after filtering in treatment: 13510885 INFO @ Tue, 02 Aug 2022 17:53:16: #1 Redundant rate of treatment: 0.38 INFO @ Tue, 02 Aug 2022 17:53:16: #1 finished! INFO @ Tue, 02 Aug 2022 17:53:16: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 17:53:16: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 17:53:17: #2 number of paired peaks: 550 WARNING @ Tue, 02 Aug 2022 17:53:17: Fewer paired peaks (550) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 550 pairs to build model! INFO @ Tue, 02 Aug 2022 17:53:17: start model_add_line... INFO @ Tue, 02 Aug 2022 17:53:17: start X-correlation... INFO @ Tue, 02 Aug 2022 17:53:17: end of X-cor INFO @ Tue, 02 Aug 2022 17:53:17: #2 finished! INFO @ Tue, 02 Aug 2022 17:53:17: #2 predicted fragment length is 84 bps INFO @ Tue, 02 Aug 2022 17:53:17: #2 alternative fragment length(s) may be 84 bps INFO @ Tue, 02 Aug 2022 17:53:17: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX10447585/SRX10447585.20_model.r WARNING @ Tue, 02 Aug 2022 17:53:17: #2 Since the d (84) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 17:53:17: #2 You may need to consider one of the other alternative d(s): 84 WARNING @ Tue, 02 Aug 2022 17:53:17: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 17:53:17: #3 Call peaks... INFO @ Tue, 02 Aug 2022 17:53:17: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 17:53:42: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 17:53:47: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 17:54:02: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 17:54:08: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX10447585/SRX10447585.10_peaks.xls INFO @ Tue, 02 Aug 2022 17:54:08: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX10447585/SRX10447585.10_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 17:54:08: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX10447585/SRX10447585.10_summits.bed INFO @ Tue, 02 Aug 2022 17:54:08: Done! pass1 - making usageList (13 chroms): 3 millis pass2 - checking and writing primary data (8679 records, 4 fields): 45 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 17:54:10: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX10447585/SRX10447585.05_peaks.xls INFO @ Tue, 02 Aug 2022 17:54:10: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX10447585/SRX10447585.05_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 17:54:10: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX10447585/SRX10447585.05_summits.bed INFO @ Tue, 02 Aug 2022 17:54:10: Done! pass1 - making usageList (14 chroms): 5 millis pass2 - checking and writing primary data (20220 records, 4 fields): 68 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 17:54:29: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX10447585/SRX10447585.20_peaks.xls INFO @ Tue, 02 Aug 2022 17:54:29: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX10447585/SRX10447585.20_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 17:54:29: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX10447585/SRX10447585.20_summits.bed INFO @ Tue, 02 Aug 2022 17:54:29: Done! pass1 - making usageList (11 chroms): 4 millis pass2 - checking and writing primary data (2274 records, 4 fields): 25 millis CompletedMACS2peakCalling