Job ID = 14167106 SRX = SRX10412068 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 29260856 spots for SRR14035703/SRR14035703.sra Written 29260856 spots for SRR14035703/SRR14035703.sra fastq に変換しました。 bowtie でマッピング中... Your job 14167935 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:49:53 29260856 reads; of these: 29260856 (100.00%) were paired; of these: 2583091 (8.83%) aligned concordantly 0 times 19939782 (68.14%) aligned concordantly exactly 1 time 6737983 (23.03%) aligned concordantly >1 times ---- 2583091 pairs aligned concordantly 0 times; of these: 422798 (16.37%) aligned discordantly 1 time ---- 2160293 pairs aligned 0 times concordantly or discordantly; of these: 4320586 mates make up the pairs; of these: 3184646 (73.71%) aligned 0 times 439738 (10.18%) aligned exactly 1 time 696202 (16.11%) aligned >1 times 94.56% overall alignment rate Time searching: 01:49:54 Overall time: 01:49:54 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 44 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 6249055 / 27051099 = 0.2310 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 10 Dec 2021 12:08:36: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX10412068/SRX10412068.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX10412068/SRX10412068.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX10412068/SRX10412068.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX10412068/SRX10412068.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Dec 2021 12:08:36: #1 read tag files... INFO @ Fri, 10 Dec 2021 12:08:36: #1 read treatment tags... INFO @ Fri, 10 Dec 2021 12:08:42: 1000000 INFO @ Fri, 10 Dec 2021 12:08:49: 2000000 INFO @ Fri, 10 Dec 2021 12:08:55: 3000000 INFO @ Fri, 10 Dec 2021 12:09:01: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 10 Dec 2021 12:09:06: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX10412068/SRX10412068.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX10412068/SRX10412068.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX10412068/SRX10412068.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX10412068/SRX10412068.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Dec 2021 12:09:06: #1 read tag files... INFO @ Fri, 10 Dec 2021 12:09:06: #1 read treatment tags... INFO @ Fri, 10 Dec 2021 12:09:07: 5000000 INFO @ Fri, 10 Dec 2021 12:09:13: 1000000 INFO @ Fri, 10 Dec 2021 12:09:13: 6000000 INFO @ Fri, 10 Dec 2021 12:09:19: 2000000 INFO @ Fri, 10 Dec 2021 12:09:20: 7000000 INFO @ Fri, 10 Dec 2021 12:09:26: 3000000 INFO @ Fri, 10 Dec 2021 12:09:27: 8000000 INFO @ Fri, 10 Dec 2021 12:09:32: 4000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 10 Dec 2021 12:09:35: 9000000 INFO @ Fri, 10 Dec 2021 12:09:36: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX10412068/SRX10412068.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX10412068/SRX10412068.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX10412068/SRX10412068.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX10412068/SRX10412068.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Dec 2021 12:09:36: #1 read tag files... INFO @ Fri, 10 Dec 2021 12:09:36: #1 read treatment tags... INFO @ Fri, 10 Dec 2021 12:09:39: 5000000 INFO @ Fri, 10 Dec 2021 12:09:43: 10000000 INFO @ Fri, 10 Dec 2021 12:09:44: 1000000 INFO @ Fri, 10 Dec 2021 12:09:45: 6000000 INFO @ Fri, 10 Dec 2021 12:09:49: 11000000 INFO @ Fri, 10 Dec 2021 12:09:51: 2000000 INFO @ Fri, 10 Dec 2021 12:09:52: 7000000 INFO @ Fri, 10 Dec 2021 12:09:55: 12000000 INFO @ Fri, 10 Dec 2021 12:09:59: 3000000 INFO @ Fri, 10 Dec 2021 12:10:00: 8000000 INFO @ Fri, 10 Dec 2021 12:10:02: 13000000 INFO @ Fri, 10 Dec 2021 12:10:06: 4000000 INFO @ Fri, 10 Dec 2021 12:10:08: 9000000 INFO @ Fri, 10 Dec 2021 12:10:08: 14000000 INFO @ Fri, 10 Dec 2021 12:10:14: 5000000 INFO @ Fri, 10 Dec 2021 12:10:14: 15000000 INFO @ Fri, 10 Dec 2021 12:10:16: 10000000 INFO @ Fri, 10 Dec 2021 12:10:21: 16000000 INFO @ Fri, 10 Dec 2021 12:10:21: 6000000 INFO @ Fri, 10 Dec 2021 12:10:22: 11000000 INFO @ Fri, 10 Dec 2021 12:10:27: 17000000 INFO @ Fri, 10 Dec 2021 12:10:29: 7000000 INFO @ Fri, 10 Dec 2021 12:10:29: 12000000 INFO @ Fri, 10 Dec 2021 12:10:34: 18000000 INFO @ Fri, 10 Dec 2021 12:10:35: 8000000 INFO @ Fri, 10 Dec 2021 12:10:35: 13000000 INFO @ Fri, 10 Dec 2021 12:10:40: 19000000 INFO @ Fri, 10 Dec 2021 12:10:42: 9000000 INFO @ Fri, 10 Dec 2021 12:10:42: 14000000 INFO @ Fri, 10 Dec 2021 12:10:46: 20000000 INFO @ Fri, 10 Dec 2021 12:10:48: 10000000 INFO @ Fri, 10 Dec 2021 12:10:48: 15000000 INFO @ Fri, 10 Dec 2021 12:10:52: 21000000 INFO @ Fri, 10 Dec 2021 12:10:55: 16000000 INFO @ Fri, 10 Dec 2021 12:10:56: 11000000 INFO @ Fri, 10 Dec 2021 12:10:59: 22000000 INFO @ Fri, 10 Dec 2021 12:11:02: 17000000 INFO @ Fri, 10 Dec 2021 12:11:03: 12000000 INFO @ Fri, 10 Dec 2021 12:11:05: 23000000 INFO @ Fri, 10 Dec 2021 12:11:08: 18000000 INFO @ Fri, 10 Dec 2021 12:11:11: 13000000 INFO @ Fri, 10 Dec 2021 12:11:11: 24000000 INFO @ Fri, 10 Dec 2021 12:11:15: 19000000 INFO @ Fri, 10 Dec 2021 12:11:18: 25000000 INFO @ Fri, 10 Dec 2021 12:11:18: 14000000 INFO @ Fri, 10 Dec 2021 12:11:21: 20000000 INFO @ Fri, 10 Dec 2021 12:11:24: 26000000 INFO @ Fri, 10 Dec 2021 12:11:26: 15000000 INFO @ Fri, 10 Dec 2021 12:11:28: 21000000 INFO @ Fri, 10 Dec 2021 12:11:30: 27000000 INFO @ Fri, 10 Dec 2021 12:11:33: 16000000 INFO @ Fri, 10 Dec 2021 12:11:34: 22000000 INFO @ Fri, 10 Dec 2021 12:11:37: 28000000 INFO @ Fri, 10 Dec 2021 12:11:40: 17000000 INFO @ Fri, 10 Dec 2021 12:11:41: 23000000 INFO @ Fri, 10 Dec 2021 12:11:43: 29000000 INFO @ Fri, 10 Dec 2021 12:11:47: 24000000 INFO @ Fri, 10 Dec 2021 12:11:48: 18000000 INFO @ Fri, 10 Dec 2021 12:11:49: 30000000 INFO @ Fri, 10 Dec 2021 12:11:54: 25000000 INFO @ Fri, 10 Dec 2021 12:11:55: 19000000 INFO @ Fri, 10 Dec 2021 12:11:56: 31000000 INFO @ Fri, 10 Dec 2021 12:12:00: 26000000 INFO @ Fri, 10 Dec 2021 12:12:02: 32000000 INFO @ Fri, 10 Dec 2021 12:12:03: 20000000 INFO @ Fri, 10 Dec 2021 12:12:07: 27000000 INFO @ Fri, 10 Dec 2021 12:12:08: 33000000 INFO @ Fri, 10 Dec 2021 12:12:11: 21000000 INFO @ Fri, 10 Dec 2021 12:12:13: 28000000 INFO @ Fri, 10 Dec 2021 12:12:14: 34000000 INFO @ Fri, 10 Dec 2021 12:12:18: 22000000 INFO @ Fri, 10 Dec 2021 12:12:20: 29000000 INFO @ Fri, 10 Dec 2021 12:12:21: 35000000 INFO @ Fri, 10 Dec 2021 12:12:26: 23000000 INFO @ Fri, 10 Dec 2021 12:12:26: 30000000 INFO @ Fri, 10 Dec 2021 12:12:27: 36000000 INFO @ Fri, 10 Dec 2021 12:12:33: 31000000 INFO @ Fri, 10 Dec 2021 12:12:33: 24000000 INFO @ Fri, 10 Dec 2021 12:12:33: 37000000 INFO @ Fri, 10 Dec 2021 12:12:39: 32000000 INFO @ Fri, 10 Dec 2021 12:12:40: 38000000 INFO @ Fri, 10 Dec 2021 12:12:40: 25000000 INFO @ Fri, 10 Dec 2021 12:12:46: 33000000 INFO @ Fri, 10 Dec 2021 12:12:46: 39000000 INFO @ Fri, 10 Dec 2021 12:12:48: 26000000 INFO @ Fri, 10 Dec 2021 12:12:52: 34000000 INFO @ Fri, 10 Dec 2021 12:12:52: 40000000 INFO @ Fri, 10 Dec 2021 12:12:55: 27000000 INFO @ Fri, 10 Dec 2021 12:12:58: 41000000 INFO @ Fri, 10 Dec 2021 12:12:59: 35000000 INFO @ Fri, 10 Dec 2021 12:13:03: 28000000 INFO @ Fri, 10 Dec 2021 12:13:05: 42000000 INFO @ Fri, 10 Dec 2021 12:13:05: 36000000 INFO @ Fri, 10 Dec 2021 12:13:10: #1 tag size is determined as 150 bps INFO @ Fri, 10 Dec 2021 12:13:10: #1 tag size = 150 INFO @ Fri, 10 Dec 2021 12:13:10: #1 total tags in treatment: 20499756 INFO @ Fri, 10 Dec 2021 12:13:10: #1 user defined the maximum tags... INFO @ Fri, 10 Dec 2021 12:13:10: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Dec 2021 12:13:10: #1 tags after filtering in treatment: 18769636 INFO @ Fri, 10 Dec 2021 12:13:10: #1 Redundant rate of treatment: 0.08 INFO @ Fri, 10 Dec 2021 12:13:10: #1 finished! INFO @ Fri, 10 Dec 2021 12:13:10: #2 Build Peak Model... INFO @ Fri, 10 Dec 2021 12:13:10: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Dec 2021 12:13:10: 29000000 INFO @ Fri, 10 Dec 2021 12:13:11: #2 number of paired peaks: 180 WARNING @ Fri, 10 Dec 2021 12:13:11: Fewer paired peaks (180) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 180 pairs to build model! INFO @ Fri, 10 Dec 2021 12:13:11: start model_add_line... INFO @ Fri, 10 Dec 2021 12:13:11: start X-correlation... INFO @ Fri, 10 Dec 2021 12:13:12: 37000000 INFO @ Fri, 10 Dec 2021 12:13:12: end of X-cor INFO @ Fri, 10 Dec 2021 12:13:12: #2 finished! INFO @ Fri, 10 Dec 2021 12:13:12: #2 predicted fragment length is 227 bps INFO @ Fri, 10 Dec 2021 12:13:12: #2 alternative fragment length(s) may be 227 bps INFO @ Fri, 10 Dec 2021 12:13:12: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX10412068/SRX10412068.05_model.r WARNING @ Fri, 10 Dec 2021 12:13:12: #2 Since the d (227) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 10 Dec 2021 12:13:12: #2 You may need to consider one of the other alternative d(s): 227 WARNING @ Fri, 10 Dec 2021 12:13:12: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 10 Dec 2021 12:13:12: #3 Call peaks... INFO @ Fri, 10 Dec 2021 12:13:12: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 10 Dec 2021 12:13:18: 30000000 INFO @ Fri, 10 Dec 2021 12:13:18: 38000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Fri, 10 Dec 2021 12:13:25: 39000000 INFO @ Fri, 10 Dec 2021 12:13:25: 31000000 INFO @ Fri, 10 Dec 2021 12:13:31: 40000000 INFO @ Fri, 10 Dec 2021 12:13:32: 32000000 INFO @ Fri, 10 Dec 2021 12:13:37: 41000000 INFO @ Fri, 10 Dec 2021 12:13:40: 33000000 INFO @ Fri, 10 Dec 2021 12:13:44: 42000000 INFO @ Fri, 10 Dec 2021 12:13:47: 34000000 INFO @ Fri, 10 Dec 2021 12:13:49: #1 tag size is determined as 150 bps INFO @ Fri, 10 Dec 2021 12:13:49: #1 tag size = 150 INFO @ Fri, 10 Dec 2021 12:13:49: #1 total tags in treatment: 20499756 INFO @ Fri, 10 Dec 2021 12:13:49: #1 user defined the maximum tags... INFO @ Fri, 10 Dec 2021 12:13:49: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Dec 2021 12:13:49: #1 tags after filtering in treatment: 18769636 INFO @ Fri, 10 Dec 2021 12:13:49: #1 Redundant rate of treatment: 0.08 INFO @ Fri, 10 Dec 2021 12:13:49: #1 finished! INFO @ Fri, 10 Dec 2021 12:13:49: #2 Build Peak Model... INFO @ Fri, 10 Dec 2021 12:13:49: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Dec 2021 12:13:50: #3 Call peaks for each chromosome... INFO @ Fri, 10 Dec 2021 12:13:51: #2 number of paired peaks: 180 WARNING @ Fri, 10 Dec 2021 12:13:51: Fewer paired peaks (180) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 180 pairs to build model! INFO @ Fri, 10 Dec 2021 12:13:51: start model_add_line... INFO @ Fri, 10 Dec 2021 12:13:51: start X-correlation... INFO @ Fri, 10 Dec 2021 12:13:51: end of X-cor INFO @ Fri, 10 Dec 2021 12:13:51: #2 finished! INFO @ Fri, 10 Dec 2021 12:13:51: #2 predicted fragment length is 227 bps INFO @ Fri, 10 Dec 2021 12:13:51: #2 alternative fragment length(s) may be 227 bps INFO @ Fri, 10 Dec 2021 12:13:51: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX10412068/SRX10412068.10_model.r WARNING @ Fri, 10 Dec 2021 12:13:51: #2 Since the d (227) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 10 Dec 2021 12:13:51: #2 You may need to consider one of the other alternative d(s): 227 WARNING @ Fri, 10 Dec 2021 12:13:51: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 10 Dec 2021 12:13:51: #3 Call peaks... INFO @ Fri, 10 Dec 2021 12:13:51: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 10 Dec 2021 12:13:54: 35000000 INFO @ Fri, 10 Dec 2021 12:14:02: 36000000 INFO @ Fri, 10 Dec 2021 12:14:09: 37000000 INFO @ Fri, 10 Dec 2021 12:14:10: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX10412068/SRX10412068.05_peaks.xls INFO @ Fri, 10 Dec 2021 12:14:10: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX10412068/SRX10412068.05_peaks.narrowPeak INFO @ Fri, 10 Dec 2021 12:14:10: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX10412068/SRX10412068.05_summits.bed INFO @ Fri, 10 Dec 2021 12:14:10: Done! pass1 - making usageList (14 chroms): 1 millis pass2 - checking and writing primary data (8514 records, 4 fields): 9 millis CompletedMACS2peakCalling INFO @ Fri, 10 Dec 2021 12:14:16: 38000000 INFO @ Fri, 10 Dec 2021 12:14:23: 39000000 INFO @ Fri, 10 Dec 2021 12:14:29: #3 Call peaks for each chromosome... INFO @ Fri, 10 Dec 2021 12:14:31: 40000000 BigWig に変換しました。 INFO @ Fri, 10 Dec 2021 12:14:38: 41000000 INFO @ Fri, 10 Dec 2021 12:14:45: 42000000 INFO @ Fri, 10 Dec 2021 12:14:49: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX10412068/SRX10412068.10_peaks.xls INFO @ Fri, 10 Dec 2021 12:14:49: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX10412068/SRX10412068.10_peaks.narrowPeak INFO @ Fri, 10 Dec 2021 12:14:49: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX10412068/SRX10412068.10_summits.bed INFO @ Fri, 10 Dec 2021 12:14:49: Done! pass1 - making usageList (14 chroms): 1 millis pass2 - checking and writing primary data (3958 records, 4 fields): 5 millis CompletedMACS2peakCalling INFO @ Fri, 10 Dec 2021 12:14:51: #1 tag size is determined as 150 bps INFO @ Fri, 10 Dec 2021 12:14:51: #1 tag size = 150 INFO @ Fri, 10 Dec 2021 12:14:51: #1 total tags in treatment: 20499756 INFO @ Fri, 10 Dec 2021 12:14:51: #1 user defined the maximum tags... INFO @ Fri, 10 Dec 2021 12:14:51: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Dec 2021 12:14:51: #1 tags after filtering in treatment: 18769636 INFO @ Fri, 10 Dec 2021 12:14:51: #1 Redundant rate of treatment: 0.08 INFO @ Fri, 10 Dec 2021 12:14:51: #1 finished! INFO @ Fri, 10 Dec 2021 12:14:51: #2 Build Peak Model... INFO @ Fri, 10 Dec 2021 12:14:51: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Dec 2021 12:14:52: #2 number of paired peaks: 180 WARNING @ Fri, 10 Dec 2021 12:14:52: Fewer paired peaks (180) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 180 pairs to build model! INFO @ Fri, 10 Dec 2021 12:14:52: start model_add_line... INFO @ Fri, 10 Dec 2021 12:14:53: start X-correlation... INFO @ Fri, 10 Dec 2021 12:14:53: end of X-cor INFO @ Fri, 10 Dec 2021 12:14:53: #2 finished! INFO @ Fri, 10 Dec 2021 12:14:53: #2 predicted fragment length is 227 bps INFO @ Fri, 10 Dec 2021 12:14:53: #2 alternative fragment length(s) may be 227 bps INFO @ Fri, 10 Dec 2021 12:14:53: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX10412068/SRX10412068.20_model.r WARNING @ Fri, 10 Dec 2021 12:14:53: #2 Since the d (227) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 10 Dec 2021 12:14:53: #2 You may need to consider one of the other alternative d(s): 227 WARNING @ Fri, 10 Dec 2021 12:14:53: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 10 Dec 2021 12:14:53: #3 Call peaks... INFO @ Fri, 10 Dec 2021 12:14:53: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 10 Dec 2021 12:15:29: #3 Call peaks for each chromosome... INFO @ Fri, 10 Dec 2021 12:15:49: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX10412068/SRX10412068.20_peaks.xls INFO @ Fri, 10 Dec 2021 12:15:49: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX10412068/SRX10412068.20_peaks.narrowPeak INFO @ Fri, 10 Dec 2021 12:15:49: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX10412068/SRX10412068.20_summits.bed INFO @ Fri, 10 Dec 2021 12:15:49: Done! pass1 - making usageList (14 chroms): 1 millis pass2 - checking and writing primary data (1358 records, 4 fields): 19 millis CompletedMACS2peakCalling