Job ID = 14167105 SRX = SRX10412067 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 28794026 spots for SRR14035702/SRR14035702.sra Written 28794026 spots for SRR14035702/SRR14035702.sra fastq に変換しました。 bowtie でマッピング中... Your job 14167934 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:50:52 28794026 reads; of these: 28794026 (100.00%) were paired; of these: 2420732 (8.41%) aligned concordantly 0 times 19429795 (67.48%) aligned concordantly exactly 1 time 6943499 (24.11%) aligned concordantly >1 times ---- 2420732 pairs aligned concordantly 0 times; of these: 400637 (16.55%) aligned discordantly 1 time ---- 2020095 pairs aligned 0 times concordantly or discordantly; of these: 4040190 mates make up the pairs; of these: 2914545 (72.14%) aligned 0 times 427235 (10.57%) aligned exactly 1 time 698410 (17.29%) aligned >1 times 94.94% overall alignment rate Time searching: 01:50:53 Overall time: 01:50:53 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 40 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 6144017 / 26719570 = 0.2299 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 10 Dec 2021 12:07:43: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX10412067/SRX10412067.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX10412067/SRX10412067.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX10412067/SRX10412067.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX10412067/SRX10412067.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Dec 2021 12:07:43: #1 read tag files... INFO @ Fri, 10 Dec 2021 12:07:43: #1 read treatment tags... INFO @ Fri, 10 Dec 2021 12:07:50: 1000000 INFO @ Fri, 10 Dec 2021 12:07:58: 2000000 INFO @ Fri, 10 Dec 2021 12:08:05: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 10 Dec 2021 12:08:12: 4000000 INFO @ Fri, 10 Dec 2021 12:08:13: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX10412067/SRX10412067.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX10412067/SRX10412067.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX10412067/SRX10412067.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX10412067/SRX10412067.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Dec 2021 12:08:13: #1 read tag files... INFO @ Fri, 10 Dec 2021 12:08:13: #1 read treatment tags... INFO @ Fri, 10 Dec 2021 12:08:21: 5000000 INFO @ Fri, 10 Dec 2021 12:08:23: 1000000 INFO @ Fri, 10 Dec 2021 12:08:30: 6000000 INFO @ Fri, 10 Dec 2021 12:08:34: 2000000 INFO @ Fri, 10 Dec 2021 12:08:39: 7000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 10 Dec 2021 12:08:43: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX10412067/SRX10412067.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX10412067/SRX10412067.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX10412067/SRX10412067.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX10412067/SRX10412067.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Dec 2021 12:08:43: #1 read tag files... INFO @ Fri, 10 Dec 2021 12:08:43: #1 read treatment tags... INFO @ Fri, 10 Dec 2021 12:08:44: 3000000 INFO @ Fri, 10 Dec 2021 12:08:48: 8000000 INFO @ Fri, 10 Dec 2021 12:08:52: 1000000 INFO @ Fri, 10 Dec 2021 12:08:55: 4000000 INFO @ Fri, 10 Dec 2021 12:08:57: 9000000 INFO @ Fri, 10 Dec 2021 12:09:02: 2000000 INFO @ Fri, 10 Dec 2021 12:09:05: 5000000 INFO @ Fri, 10 Dec 2021 12:09:07: 10000000 INFO @ Fri, 10 Dec 2021 12:09:11: 3000000 INFO @ Fri, 10 Dec 2021 12:09:16: 6000000 INFO @ Fri, 10 Dec 2021 12:09:16: 11000000 INFO @ Fri, 10 Dec 2021 12:09:20: 4000000 INFO @ Fri, 10 Dec 2021 12:09:26: 12000000 INFO @ Fri, 10 Dec 2021 12:09:27: 7000000 INFO @ Fri, 10 Dec 2021 12:09:30: 5000000 INFO @ Fri, 10 Dec 2021 12:09:35: 13000000 INFO @ Fri, 10 Dec 2021 12:09:37: 8000000 INFO @ Fri, 10 Dec 2021 12:09:39: 6000000 INFO @ Fri, 10 Dec 2021 12:09:44: 14000000 INFO @ Fri, 10 Dec 2021 12:09:48: 9000000 INFO @ Fri, 10 Dec 2021 12:09:49: 7000000 INFO @ Fri, 10 Dec 2021 12:09:54: 15000000 INFO @ Fri, 10 Dec 2021 12:09:58: 8000000 INFO @ Fri, 10 Dec 2021 12:09:59: 10000000 INFO @ Fri, 10 Dec 2021 12:10:03: 16000000 INFO @ Fri, 10 Dec 2021 12:10:08: 9000000 INFO @ Fri, 10 Dec 2021 12:10:10: 11000000 INFO @ Fri, 10 Dec 2021 12:10:13: 17000000 INFO @ Fri, 10 Dec 2021 12:10:17: 10000000 INFO @ Fri, 10 Dec 2021 12:10:21: 12000000 INFO @ Fri, 10 Dec 2021 12:10:22: 18000000 INFO @ Fri, 10 Dec 2021 12:10:26: 11000000 INFO @ Fri, 10 Dec 2021 12:10:31: 13000000 INFO @ Fri, 10 Dec 2021 12:10:32: 19000000 INFO @ Fri, 10 Dec 2021 12:10:36: 12000000 INFO @ Fri, 10 Dec 2021 12:10:41: 20000000 INFO @ Fri, 10 Dec 2021 12:10:42: 14000000 INFO @ Fri, 10 Dec 2021 12:10:45: 13000000 INFO @ Fri, 10 Dec 2021 12:10:51: 21000000 INFO @ Fri, 10 Dec 2021 12:10:53: 15000000 INFO @ Fri, 10 Dec 2021 12:10:55: 14000000 INFO @ Fri, 10 Dec 2021 12:11:00: 22000000 INFO @ Fri, 10 Dec 2021 12:11:03: 16000000 INFO @ Fri, 10 Dec 2021 12:11:04: 15000000 INFO @ Fri, 10 Dec 2021 12:11:10: 23000000 INFO @ Fri, 10 Dec 2021 12:11:13: 16000000 INFO @ Fri, 10 Dec 2021 12:11:14: 17000000 INFO @ Fri, 10 Dec 2021 12:11:19: 24000000 INFO @ Fri, 10 Dec 2021 12:11:23: 17000000 INFO @ Fri, 10 Dec 2021 12:11:24: 18000000 INFO @ Fri, 10 Dec 2021 12:11:28: 25000000 INFO @ Fri, 10 Dec 2021 12:11:32: 18000000 INFO @ Fri, 10 Dec 2021 12:11:35: 19000000 INFO @ Fri, 10 Dec 2021 12:11:38: 26000000 INFO @ Fri, 10 Dec 2021 12:11:41: 19000000 INFO @ Fri, 10 Dec 2021 12:11:45: 20000000 INFO @ Fri, 10 Dec 2021 12:11:47: 27000000 INFO @ Fri, 10 Dec 2021 12:11:50: 20000000 INFO @ Fri, 10 Dec 2021 12:11:56: 21000000 INFO @ Fri, 10 Dec 2021 12:11:56: 28000000 INFO @ Fri, 10 Dec 2021 12:12:00: 21000000 INFO @ Fri, 10 Dec 2021 12:12:06: 29000000 INFO @ Fri, 10 Dec 2021 12:12:07: 22000000 INFO @ Fri, 10 Dec 2021 12:12:09: 22000000 INFO @ Fri, 10 Dec 2021 12:12:15: 30000000 INFO @ Fri, 10 Dec 2021 12:12:17: 23000000 INFO @ Fri, 10 Dec 2021 12:12:18: 23000000 INFO @ Fri, 10 Dec 2021 12:12:24: 31000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Fri, 10 Dec 2021 12:12:28: 24000000 INFO @ Fri, 10 Dec 2021 12:12:29: 24000000 INFO @ Fri, 10 Dec 2021 12:12:34: 32000000 INFO @ Fri, 10 Dec 2021 12:12:39: 25000000 INFO @ Fri, 10 Dec 2021 12:12:40: 25000000 INFO @ Fri, 10 Dec 2021 12:12:43: 33000000 INFO @ Fri, 10 Dec 2021 12:12:50: 26000000 INFO @ Fri, 10 Dec 2021 12:12:50: 26000000 INFO @ Fri, 10 Dec 2021 12:12:53: 34000000 INFO @ Fri, 10 Dec 2021 12:13:01: 27000000 INFO @ Fri, 10 Dec 2021 12:13:01: 27000000 INFO @ Fri, 10 Dec 2021 12:13:03: 35000000 INFO @ Fri, 10 Dec 2021 12:13:12: 28000000 INFO @ Fri, 10 Dec 2021 12:13:12: 28000000 INFO @ Fri, 10 Dec 2021 12:13:12: 36000000 INFO @ Fri, 10 Dec 2021 12:13:22: 37000000 INFO @ Fri, 10 Dec 2021 12:13:22: 29000000 INFO @ Fri, 10 Dec 2021 12:13:23: 29000000 INFO @ Fri, 10 Dec 2021 12:13:32: 38000000 INFO @ Fri, 10 Dec 2021 12:13:33: 30000000 INFO @ Fri, 10 Dec 2021 12:13:34: 30000000 BigWig に変換しました。 INFO @ Fri, 10 Dec 2021 12:13:42: 39000000 INFO @ Fri, 10 Dec 2021 12:13:44: 31000000 INFO @ Fri, 10 Dec 2021 12:13:44: 31000000 INFO @ Fri, 10 Dec 2021 12:13:51: 40000000 INFO @ Fri, 10 Dec 2021 12:13:54: 32000000 INFO @ Fri, 10 Dec 2021 12:13:55: 32000000 INFO @ Fri, 10 Dec 2021 12:14:00: 41000000 INFO @ Fri, 10 Dec 2021 12:14:05: 33000000 INFO @ Fri, 10 Dec 2021 12:14:05: 33000000 INFO @ Fri, 10 Dec 2021 12:14:09: 42000000 INFO @ Fri, 10 Dec 2021 12:14:12: #1 tag size is determined as 150 bps INFO @ Fri, 10 Dec 2021 12:14:12: #1 tag size = 150 INFO @ Fri, 10 Dec 2021 12:14:12: #1 total tags in treatment: 20295616 INFO @ Fri, 10 Dec 2021 12:14:12: #1 user defined the maximum tags... INFO @ Fri, 10 Dec 2021 12:14:12: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Dec 2021 12:14:13: #1 tags after filtering in treatment: 18602179 INFO @ Fri, 10 Dec 2021 12:14:13: #1 Redundant rate of treatment: 0.08 INFO @ Fri, 10 Dec 2021 12:14:13: #1 finished! INFO @ Fri, 10 Dec 2021 12:14:13: #2 Build Peak Model... INFO @ Fri, 10 Dec 2021 12:14:13: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Dec 2021 12:14:14: #2 number of paired peaks: 197 WARNING @ Fri, 10 Dec 2021 12:14:14: Fewer paired peaks (197) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 197 pairs to build model! INFO @ Fri, 10 Dec 2021 12:14:14: start model_add_line... INFO @ Fri, 10 Dec 2021 12:14:14: start X-correlation... INFO @ Fri, 10 Dec 2021 12:14:14: end of X-cor INFO @ Fri, 10 Dec 2021 12:14:14: #2 finished! INFO @ Fri, 10 Dec 2021 12:14:14: #2 predicted fragment length is 219 bps INFO @ Fri, 10 Dec 2021 12:14:14: #2 alternative fragment length(s) may be 219 bps INFO @ Fri, 10 Dec 2021 12:14:14: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX10412067/SRX10412067.05_model.r WARNING @ Fri, 10 Dec 2021 12:14:14: #2 Since the d (219) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 10 Dec 2021 12:14:14: #2 You may need to consider one of the other alternative d(s): 219 WARNING @ Fri, 10 Dec 2021 12:14:14: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 10 Dec 2021 12:14:14: #3 Call peaks... INFO @ Fri, 10 Dec 2021 12:14:14: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 10 Dec 2021 12:14:15: 34000000 INFO @ Fri, 10 Dec 2021 12:14:16: 34000000 INFO @ Fri, 10 Dec 2021 12:14:25: 35000000 INFO @ Fri, 10 Dec 2021 12:14:26: 35000000 INFO @ Fri, 10 Dec 2021 12:14:35: 36000000 INFO @ Fri, 10 Dec 2021 12:14:36: 36000000 INFO @ Fri, 10 Dec 2021 12:14:46: 37000000 INFO @ Fri, 10 Dec 2021 12:14:46: 37000000 INFO @ Fri, 10 Dec 2021 12:14:50: #3 Call peaks for each chromosome... INFO @ Fri, 10 Dec 2021 12:14:56: 38000000 INFO @ Fri, 10 Dec 2021 12:14:56: 38000000 INFO @ Fri, 10 Dec 2021 12:15:06: 39000000 INFO @ Fri, 10 Dec 2021 12:15:07: 39000000 INFO @ Fri, 10 Dec 2021 12:15:09: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX10412067/SRX10412067.05_peaks.xls INFO @ Fri, 10 Dec 2021 12:15:09: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX10412067/SRX10412067.05_peaks.narrowPeak INFO @ Fri, 10 Dec 2021 12:15:09: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX10412067/SRX10412067.05_summits.bed INFO @ Fri, 10 Dec 2021 12:15:09: Done! pass1 - making usageList (14 chroms): 1 millis pass2 - checking and writing primary data (8376 records, 4 fields): 9 millis CompletedMACS2peakCalling INFO @ Fri, 10 Dec 2021 12:15:16: 40000000 INFO @ Fri, 10 Dec 2021 12:15:17: 40000000 INFO @ Fri, 10 Dec 2021 12:15:26: 41000000 INFO @ Fri, 10 Dec 2021 12:15:27: 41000000 INFO @ Fri, 10 Dec 2021 12:15:36: 42000000 INFO @ Fri, 10 Dec 2021 12:15:37: 42000000 INFO @ Fri, 10 Dec 2021 12:15:40: #1 tag size is determined as 150 bps INFO @ Fri, 10 Dec 2021 12:15:40: #1 tag size = 150 INFO @ Fri, 10 Dec 2021 12:15:40: #1 total tags in treatment: 20295616 INFO @ Fri, 10 Dec 2021 12:15:40: #1 user defined the maximum tags... INFO @ Fri, 10 Dec 2021 12:15:40: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Dec 2021 12:15:40: #1 tags after filtering in treatment: 18602179 INFO @ Fri, 10 Dec 2021 12:15:40: #1 Redundant rate of treatment: 0.08 INFO @ Fri, 10 Dec 2021 12:15:40: #1 finished! INFO @ Fri, 10 Dec 2021 12:15:40: #2 Build Peak Model... INFO @ Fri, 10 Dec 2021 12:15:40: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Dec 2021 12:15:41: #1 tag size is determined as 150 bps INFO @ Fri, 10 Dec 2021 12:15:41: #1 tag size = 150 INFO @ Fri, 10 Dec 2021 12:15:41: #1 total tags in treatment: 20295616 INFO @ Fri, 10 Dec 2021 12:15:41: #1 user defined the maximum tags... INFO @ Fri, 10 Dec 2021 12:15:41: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Dec 2021 12:15:41: #1 tags after filtering in treatment: 18602179 INFO @ Fri, 10 Dec 2021 12:15:41: #1 Redundant rate of treatment: 0.08 INFO @ Fri, 10 Dec 2021 12:15:41: #1 finished! INFO @ Fri, 10 Dec 2021 12:15:41: #2 Build Peak Model... INFO @ Fri, 10 Dec 2021 12:15:41: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Dec 2021 12:15:41: #2 number of paired peaks: 197 WARNING @ Fri, 10 Dec 2021 12:15:41: Fewer paired peaks (197) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 197 pairs to build model! INFO @ Fri, 10 Dec 2021 12:15:41: start model_add_line... INFO @ Fri, 10 Dec 2021 12:15:42: start X-correlation... INFO @ Fri, 10 Dec 2021 12:15:42: end of X-cor INFO @ Fri, 10 Dec 2021 12:15:42: #2 finished! INFO @ Fri, 10 Dec 2021 12:15:42: #2 predicted fragment length is 219 bps INFO @ Fri, 10 Dec 2021 12:15:42: #2 alternative fragment length(s) may be 219 bps INFO @ Fri, 10 Dec 2021 12:15:42: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX10412067/SRX10412067.10_model.r WARNING @ Fri, 10 Dec 2021 12:15:42: #2 Since the d (219) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 10 Dec 2021 12:15:42: #2 You may need to consider one of the other alternative d(s): 219 WARNING @ Fri, 10 Dec 2021 12:15:42: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 10 Dec 2021 12:15:42: #3 Call peaks... INFO @ Fri, 10 Dec 2021 12:15:42: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 10 Dec 2021 12:15:42: #2 number of paired peaks: 197 WARNING @ Fri, 10 Dec 2021 12:15:42: Fewer paired peaks (197) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 197 pairs to build model! INFO @ Fri, 10 Dec 2021 12:15:42: start model_add_line... INFO @ Fri, 10 Dec 2021 12:15:42: start X-correlation... INFO @ Fri, 10 Dec 2021 12:15:42: end of X-cor INFO @ Fri, 10 Dec 2021 12:15:42: #2 finished! INFO @ Fri, 10 Dec 2021 12:15:42: #2 predicted fragment length is 219 bps INFO @ Fri, 10 Dec 2021 12:15:42: #2 alternative fragment length(s) may be 219 bps INFO @ Fri, 10 Dec 2021 12:15:42: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX10412067/SRX10412067.20_model.r WARNING @ Fri, 10 Dec 2021 12:15:42: #2 Since the d (219) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 10 Dec 2021 12:15:42: #2 You may need to consider one of the other alternative d(s): 219 WARNING @ Fri, 10 Dec 2021 12:15:42: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 10 Dec 2021 12:15:42: #3 Call peaks... INFO @ Fri, 10 Dec 2021 12:15:42: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 10 Dec 2021 12:16:18: #3 Call peaks for each chromosome... INFO @ Fri, 10 Dec 2021 12:16:18: #3 Call peaks for each chromosome... INFO @ Fri, 10 Dec 2021 12:16:36: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX10412067/SRX10412067.20_peaks.xls INFO @ Fri, 10 Dec 2021 12:16:36: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX10412067/SRX10412067.20_peaks.narrowPeak INFO @ Fri, 10 Dec 2021 12:16:36: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX10412067/SRX10412067.20_summits.bed INFO @ Fri, 10 Dec 2021 12:16:36: Done! pass1 - making usageList (14 chroms): 1 millis pass2 - checking and writing primary data (1359 records, 4 fields): 3 millis CompletedMACS2peakCalling INFO @ Fri, 10 Dec 2021 12:16:36: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX10412067/SRX10412067.10_peaks.xls INFO @ Fri, 10 Dec 2021 12:16:36: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX10412067/SRX10412067.10_peaks.narrowPeak INFO @ Fri, 10 Dec 2021 12:16:36: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX10412067/SRX10412067.10_summits.bed INFO @ Fri, 10 Dec 2021 12:16:36: Done! pass1 - making usageList (14 chroms): 1 millis pass2 - checking and writing primary data (3825 records, 4 fields): 9 millis CompletedMACS2peakCalling