Job ID = 14167182 SRX = SRX10367658 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 61050320 spots for SRR13990202/SRR13990202.sra Written 61050320 spots for SRR13990202/SRR13990202.sra fastq に変換しました。 bowtie でマッピング中... Your job 14168192 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 02:05:34 61050320 reads; of these: 61050320 (100.00%) were paired; of these: 14861437 (24.34%) aligned concordantly 0 times 29771011 (48.76%) aligned concordantly exactly 1 time 16417872 (26.89%) aligned concordantly >1 times ---- 14861437 pairs aligned concordantly 0 times; of these: 4706006 (31.67%) aligned discordantly 1 time ---- 10155431 pairs aligned 0 times concordantly or discordantly; of these: 20310862 mates make up the pairs; of these: 11598387 (57.10%) aligned 0 times 2071391 (10.20%) aligned exactly 1 time 6641084 (32.70%) aligned >1 times 90.50% overall alignment rate Time searching: 02:05:34 Overall time: 02:05:34 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 48 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 9116872 / 50071786 = 0.1821 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 10 Dec 2021 13:35:13: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX10367658/SRX10367658.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX10367658/SRX10367658.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX10367658/SRX10367658.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX10367658/SRX10367658.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Dec 2021 13:35:13: #1 read tag files... INFO @ Fri, 10 Dec 2021 13:35:13: #1 read treatment tags... INFO @ Fri, 10 Dec 2021 13:35:21: 1000000 INFO @ Fri, 10 Dec 2021 13:35:29: 2000000 INFO @ Fri, 10 Dec 2021 13:35:36: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 10 Dec 2021 13:35:43: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX10367658/SRX10367658.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX10367658/SRX10367658.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX10367658/SRX10367658.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX10367658/SRX10367658.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Dec 2021 13:35:43: #1 read tag files... INFO @ Fri, 10 Dec 2021 13:35:43: #1 read treatment tags... INFO @ Fri, 10 Dec 2021 13:35:44: 4000000 INFO @ Fri, 10 Dec 2021 13:35:51: 1000000 INFO @ Fri, 10 Dec 2021 13:35:51: 5000000 INFO @ Fri, 10 Dec 2021 13:35:58: 2000000 INFO @ Fri, 10 Dec 2021 13:35:59: 6000000 INFO @ Fri, 10 Dec 2021 13:36:05: 3000000 INFO @ Fri, 10 Dec 2021 13:36:07: 7000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 10 Dec 2021 13:36:12: 4000000 INFO @ Fri, 10 Dec 2021 13:36:13: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX10367658/SRX10367658.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX10367658/SRX10367658.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX10367658/SRX10367658.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX10367658/SRX10367658.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Dec 2021 13:36:13: #1 read tag files... INFO @ Fri, 10 Dec 2021 13:36:13: #1 read treatment tags... INFO @ Fri, 10 Dec 2021 13:36:14: 8000000 INFO @ Fri, 10 Dec 2021 13:36:20: 5000000 INFO @ Fri, 10 Dec 2021 13:36:22: 1000000 INFO @ Fri, 10 Dec 2021 13:36:22: 9000000 INFO @ Fri, 10 Dec 2021 13:36:28: 6000000 INFO @ Fri, 10 Dec 2021 13:36:30: 2000000 INFO @ Fri, 10 Dec 2021 13:36:30: 10000000 INFO @ Fri, 10 Dec 2021 13:36:36: 7000000 INFO @ Fri, 10 Dec 2021 13:36:38: 3000000 INFO @ Fri, 10 Dec 2021 13:36:39: 11000000 INFO @ Fri, 10 Dec 2021 13:36:44: 8000000 INFO @ Fri, 10 Dec 2021 13:36:46: 4000000 INFO @ Fri, 10 Dec 2021 13:36:47: 12000000 INFO @ Fri, 10 Dec 2021 13:36:52: 9000000 INFO @ Fri, 10 Dec 2021 13:36:54: 5000000 INFO @ Fri, 10 Dec 2021 13:36:56: 13000000 INFO @ Fri, 10 Dec 2021 13:37:00: 10000000 INFO @ Fri, 10 Dec 2021 13:37:02: 6000000 INFO @ Fri, 10 Dec 2021 13:37:05: 14000000 INFO @ Fri, 10 Dec 2021 13:37:10: 11000000 INFO @ Fri, 10 Dec 2021 13:37:10: 7000000 INFO @ Fri, 10 Dec 2021 13:37:14: 15000000 INFO @ Fri, 10 Dec 2021 13:37:18: 8000000 INFO @ Fri, 10 Dec 2021 13:37:19: 12000000 INFO @ Fri, 10 Dec 2021 13:37:23: 16000000 INFO @ Fri, 10 Dec 2021 13:37:26: 9000000 INFO @ Fri, 10 Dec 2021 13:37:29: 13000000 INFO @ Fri, 10 Dec 2021 13:37:32: 17000000 INFO @ Fri, 10 Dec 2021 13:37:33: 10000000 INFO @ Fri, 10 Dec 2021 13:37:39: 14000000 INFO @ Fri, 10 Dec 2021 13:37:41: 18000000 INFO @ Fri, 10 Dec 2021 13:37:43: 11000000 INFO @ Fri, 10 Dec 2021 13:37:47: 15000000 INFO @ Fri, 10 Dec 2021 13:37:50: 19000000 INFO @ Fri, 10 Dec 2021 13:37:52: 12000000 INFO @ Fri, 10 Dec 2021 13:37:57: 16000000 INFO @ Fri, 10 Dec 2021 13:37:59: 20000000 INFO @ Fri, 10 Dec 2021 13:38:02: 13000000 INFO @ Fri, 10 Dec 2021 13:38:07: 17000000 INFO @ Fri, 10 Dec 2021 13:38:08: 21000000 INFO @ Fri, 10 Dec 2021 13:38:12: 14000000 INFO @ Fri, 10 Dec 2021 13:38:16: 22000000 INFO @ Fri, 10 Dec 2021 13:38:16: 18000000 INFO @ Fri, 10 Dec 2021 13:38:20: 15000000 INFO @ Fri, 10 Dec 2021 13:38:25: 23000000 INFO @ Fri, 10 Dec 2021 13:38:26: 19000000 INFO @ Fri, 10 Dec 2021 13:38:30: 16000000 INFO @ Fri, 10 Dec 2021 13:38:34: 24000000 INFO @ Fri, 10 Dec 2021 13:38:35: 20000000 INFO @ Fri, 10 Dec 2021 13:38:40: 17000000 INFO @ Fri, 10 Dec 2021 13:38:43: 25000000 INFO @ Fri, 10 Dec 2021 13:38:45: 21000000 INFO @ Fri, 10 Dec 2021 13:38:50: 18000000 INFO @ Fri, 10 Dec 2021 13:38:52: 26000000 INFO @ Fri, 10 Dec 2021 13:38:55: 22000000 INFO @ Fri, 10 Dec 2021 13:39:00: 19000000 INFO @ Fri, 10 Dec 2021 13:39:01: 27000000 INFO @ Fri, 10 Dec 2021 13:39:04: 23000000 INFO @ Fri, 10 Dec 2021 13:39:09: 28000000 INFO @ Fri, 10 Dec 2021 13:39:10: 20000000 INFO @ Fri, 10 Dec 2021 13:39:14: 24000000 INFO @ Fri, 10 Dec 2021 13:39:18: 29000000 INFO @ Fri, 10 Dec 2021 13:39:19: 21000000 INFO @ Fri, 10 Dec 2021 13:39:23: 25000000 INFO @ Fri, 10 Dec 2021 13:39:27: 30000000 INFO @ Fri, 10 Dec 2021 13:39:29: 22000000 INFO @ Fri, 10 Dec 2021 13:39:33: 26000000 INFO @ Fri, 10 Dec 2021 13:39:36: 31000000 INFO @ Fri, 10 Dec 2021 13:39:38: 23000000 INFO @ Fri, 10 Dec 2021 13:39:42: 27000000 INFO @ Fri, 10 Dec 2021 13:39:45: 32000000 INFO @ Fri, 10 Dec 2021 13:39:48: 24000000 INFO @ Fri, 10 Dec 2021 13:39:52: 28000000 INFO @ Fri, 10 Dec 2021 13:39:54: 33000000 INFO @ Fri, 10 Dec 2021 13:39:57: 25000000 INFO @ Fri, 10 Dec 2021 13:40:01: 29000000 INFO @ Fri, 10 Dec 2021 13:40:03: 34000000 INFO @ Fri, 10 Dec 2021 13:40:07: 26000000 INFO @ Fri, 10 Dec 2021 13:40:11: 30000000 INFO @ Fri, 10 Dec 2021 13:40:11: 35000000 INFO @ Fri, 10 Dec 2021 13:40:18: 27000000 INFO @ Fri, 10 Dec 2021 13:40:20: 36000000 INFO @ Fri, 10 Dec 2021 13:40:22: 31000000 INFO @ Fri, 10 Dec 2021 13:40:28: 28000000 INFO @ Fri, 10 Dec 2021 13:40:29: 37000000 INFO @ Fri, 10 Dec 2021 13:40:32: 32000000 INFO @ Fri, 10 Dec 2021 13:40:37: 38000000 INFO @ Fri, 10 Dec 2021 13:40:38: 29000000 INFO @ Fri, 10 Dec 2021 13:40:42: 33000000 INFO @ Fri, 10 Dec 2021 13:40:46: 39000000 INFO @ Fri, 10 Dec 2021 13:40:48: 30000000 INFO @ Fri, 10 Dec 2021 13:40:52: 34000000 INFO @ Fri, 10 Dec 2021 13:40:55: 40000000 INFO @ Fri, 10 Dec 2021 13:40:59: 31000000 INFO @ Fri, 10 Dec 2021 13:41:03: 35000000 INFO @ Fri, 10 Dec 2021 13:41:04: 41000000 INFO @ Fri, 10 Dec 2021 13:41:10: 32000000 INFO @ Fri, 10 Dec 2021 13:41:13: 42000000 INFO @ Fri, 10 Dec 2021 13:41:13: 36000000 INFO @ Fri, 10 Dec 2021 13:41:19: 33000000 INFO @ Fri, 10 Dec 2021 13:41:22: 43000000 INFO @ Fri, 10 Dec 2021 13:41:23: 37000000 INFO @ Fri, 10 Dec 2021 13:41:30: 34000000 INFO @ Fri, 10 Dec 2021 13:41:31: 44000000 INFO @ Fri, 10 Dec 2021 13:41:33: 38000000 INFO @ Fri, 10 Dec 2021 13:41:39: 45000000 INFO @ Fri, 10 Dec 2021 13:41:41: 35000000 INFO @ Fri, 10 Dec 2021 13:41:43: 39000000 INFO @ Fri, 10 Dec 2021 13:41:48: 46000000 INFO @ Fri, 10 Dec 2021 13:41:51: 36000000 INFO @ Fri, 10 Dec 2021 13:41:54: 40000000 INFO @ Fri, 10 Dec 2021 13:41:57: 47000000 INFO @ Fri, 10 Dec 2021 13:42:01: 37000000 INFO @ Fri, 10 Dec 2021 13:42:04: 41000000 INFO @ Fri, 10 Dec 2021 13:42:06: 48000000 INFO @ Fri, 10 Dec 2021 13:42:11: 38000000 INFO @ Fri, 10 Dec 2021 13:42:14: 42000000 INFO @ Fri, 10 Dec 2021 13:42:16: 49000000 INFO @ Fri, 10 Dec 2021 13:42:21: 39000000 INFO @ Fri, 10 Dec 2021 13:42:23: 43000000 INFO @ Fri, 10 Dec 2021 13:42:26: 50000000 INFO @ Fri, 10 Dec 2021 13:42:30: 40000000 INFO @ Fri, 10 Dec 2021 13:42:33: 44000000 INFO @ Fri, 10 Dec 2021 13:42:35: 51000000 INFO @ Fri, 10 Dec 2021 13:42:41: 41000000 INFO @ Fri, 10 Dec 2021 13:42:43: 45000000 INFO @ Fri, 10 Dec 2021 13:42:44: 52000000 INFO @ Fri, 10 Dec 2021 13:42:51: 42000000 INFO @ Fri, 10 Dec 2021 13:42:53: 53000000 INFO @ Fri, 10 Dec 2021 13:42:54: 46000000 INFO @ Fri, 10 Dec 2021 13:43:02: 43000000 INFO @ Fri, 10 Dec 2021 13:43:02: 54000000 INFO @ Fri, 10 Dec 2021 13:43:04: 47000000 INFO @ Fri, 10 Dec 2021 13:43:10: 55000000 INFO @ Fri, 10 Dec 2021 13:43:12: 44000000 INFO @ Fri, 10 Dec 2021 13:43:14: 48000000 INFO @ Fri, 10 Dec 2021 13:43:20: 56000000 INFO @ Fri, 10 Dec 2021 13:43:23: 45000000 INFO @ Fri, 10 Dec 2021 13:43:24: 49000000 INFO @ Fri, 10 Dec 2021 13:43:29: 57000000 INFO @ Fri, 10 Dec 2021 13:43:33: 46000000 INFO @ Fri, 10 Dec 2021 13:43:35: 50000000 INFO @ Fri, 10 Dec 2021 13:43:37: 58000000 INFO @ Fri, 10 Dec 2021 13:43:43: 47000000 INFO @ Fri, 10 Dec 2021 13:43:45: 51000000 INFO @ Fri, 10 Dec 2021 13:43:47: 59000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Fri, 10 Dec 2021 13:43:53: 48000000 INFO @ Fri, 10 Dec 2021 13:43:55: 52000000 INFO @ Fri, 10 Dec 2021 13:43:56: 60000000 INFO @ Fri, 10 Dec 2021 13:44:03: 49000000 INFO @ Fri, 10 Dec 2021 13:44:05: 53000000 INFO @ Fri, 10 Dec 2021 13:44:05: 61000000 INFO @ Fri, 10 Dec 2021 13:44:13: 50000000 INFO @ Fri, 10 Dec 2021 13:44:13: 62000000 INFO @ Fri, 10 Dec 2021 13:44:14: 54000000 INFO @ Fri, 10 Dec 2021 13:44:22: 63000000 INFO @ Fri, 10 Dec 2021 13:44:22: 51000000 INFO @ Fri, 10 Dec 2021 13:44:23: 55000000 INFO @ Fri, 10 Dec 2021 13:44:30: 64000000 INFO @ Fri, 10 Dec 2021 13:44:31: 56000000 INFO @ Fri, 10 Dec 2021 13:44:32: 52000000 INFO @ Fri, 10 Dec 2021 13:44:38: 65000000 INFO @ Fri, 10 Dec 2021 13:44:41: 57000000 INFO @ Fri, 10 Dec 2021 13:44:41: 53000000 INFO @ Fri, 10 Dec 2021 13:44:47: 66000000 INFO @ Fri, 10 Dec 2021 13:44:50: 58000000 INFO @ Fri, 10 Dec 2021 13:44:51: 54000000 INFO @ Fri, 10 Dec 2021 13:44:55: 67000000 INFO @ Fri, 10 Dec 2021 13:45:00: 59000000 INFO @ Fri, 10 Dec 2021 13:45:01: 55000000 INFO @ Fri, 10 Dec 2021 13:45:04: 68000000 INFO @ Fri, 10 Dec 2021 13:45:10: 60000000 INFO @ Fri, 10 Dec 2021 13:45:11: 56000000 INFO @ Fri, 10 Dec 2021 13:45:12: 69000000 INFO @ Fri, 10 Dec 2021 13:45:20: 61000000 INFO @ Fri, 10 Dec 2021 13:45:21: 57000000 INFO @ Fri, 10 Dec 2021 13:45:21: 70000000 INFO @ Fri, 10 Dec 2021 13:45:29: 62000000 INFO @ Fri, 10 Dec 2021 13:45:30: 58000000 INFO @ Fri, 10 Dec 2021 13:45:30: 71000000 INFO @ Fri, 10 Dec 2021 13:45:37: 63000000 INFO @ Fri, 10 Dec 2021 13:45:39: 59000000 INFO @ Fri, 10 Dec 2021 13:45:39: 72000000 INFO @ Fri, 10 Dec 2021 13:45:46: 64000000 INFO @ Fri, 10 Dec 2021 13:45:49: 73000000 INFO @ Fri, 10 Dec 2021 13:45:49: 60000000 INFO @ Fri, 10 Dec 2021 13:45:56: 65000000 INFO @ Fri, 10 Dec 2021 13:45:58: 74000000 INFO @ Fri, 10 Dec 2021 13:45:59: 61000000 INFO @ Fri, 10 Dec 2021 13:46:06: 66000000 INFO @ Fri, 10 Dec 2021 13:46:07: 75000000 INFO @ Fri, 10 Dec 2021 13:46:07: 62000000 INFO @ Fri, 10 Dec 2021 13:46:15: 67000000 INFO @ Fri, 10 Dec 2021 13:46:16: 63000000 INFO @ Fri, 10 Dec 2021 13:46:16: 76000000 INFO @ Fri, 10 Dec 2021 13:46:24: 68000000 INFO @ Fri, 10 Dec 2021 13:46:26: 64000000 INFO @ Fri, 10 Dec 2021 13:46:26: 77000000 BigWig に変換しました。 INFO @ Fri, 10 Dec 2021 13:46:34: 69000000 INFO @ Fri, 10 Dec 2021 13:46:35: 65000000 INFO @ Fri, 10 Dec 2021 13:46:36: 78000000 INFO @ Fri, 10 Dec 2021 13:46:44: 70000000 INFO @ Fri, 10 Dec 2021 13:46:45: 66000000 INFO @ Fri, 10 Dec 2021 13:46:45: 79000000 INFO @ Fri, 10 Dec 2021 13:46:53: 67000000 INFO @ Fri, 10 Dec 2021 13:46:53: 71000000 INFO @ Fri, 10 Dec 2021 13:46:55: 80000000 INFO @ Fri, 10 Dec 2021 13:47:03: 68000000 INFO @ Fri, 10 Dec 2021 13:47:04: 72000000 INFO @ Fri, 10 Dec 2021 13:47:06: 81000000 INFO @ Fri, 10 Dec 2021 13:47:14: 69000000 INFO @ Fri, 10 Dec 2021 13:47:16: 73000000 INFO @ Fri, 10 Dec 2021 13:47:18: 82000000 INFO @ Fri, 10 Dec 2021 13:47:29: 70000000 INFO @ Fri, 10 Dec 2021 13:47:30: 74000000 INFO @ Fri, 10 Dec 2021 13:47:32: 83000000 INFO @ Fri, 10 Dec 2021 13:47:41: 71000000 INFO @ Fri, 10 Dec 2021 13:47:42: 75000000 INFO @ Fri, 10 Dec 2021 13:47:44: 84000000 INFO @ Fri, 10 Dec 2021 13:47:52: 72000000 INFO @ Fri, 10 Dec 2021 13:47:53: 76000000 INFO @ Fri, 10 Dec 2021 13:47:54: 85000000 INFO @ Fri, 10 Dec 2021 13:48:02: 73000000 INFO @ Fri, 10 Dec 2021 13:48:03: 77000000 INFO @ Fri, 10 Dec 2021 13:48:05: 86000000 INFO @ Fri, 10 Dec 2021 13:48:14: 74000000 INFO @ Fri, 10 Dec 2021 13:48:16: 78000000 INFO @ Fri, 10 Dec 2021 13:48:19: 87000000 INFO @ Fri, 10 Dec 2021 13:48:28: 75000000 INFO @ Fri, 10 Dec 2021 13:48:29: 79000000 INFO @ Fri, 10 Dec 2021 13:48:31: 88000000 INFO @ Fri, 10 Dec 2021 13:48:40: 76000000 INFO @ Fri, 10 Dec 2021 13:48:43: 80000000 INFO @ Fri, 10 Dec 2021 13:48:46: 89000000 INFO @ Fri, 10 Dec 2021 13:48:54: 77000000 INFO @ Fri, 10 Dec 2021 13:48:57: 81000000 INFO @ Fri, 10 Dec 2021 13:49:01: 90000000 INFO @ Fri, 10 Dec 2021 13:49:08: 78000000 INFO @ Fri, 10 Dec 2021 13:49:11: 82000000 INFO @ Fri, 10 Dec 2021 13:49:16: 91000000 INFO @ Fri, 10 Dec 2021 13:49:24: 79000000 INFO @ Fri, 10 Dec 2021 13:49:27: 83000000 INFO @ Fri, 10 Dec 2021 13:49:32: 92000000 INFO @ Fri, 10 Dec 2021 13:49:37: #1 tag size is determined as 51 bps INFO @ Fri, 10 Dec 2021 13:49:37: #1 tag size = 51 INFO @ Fri, 10 Dec 2021 13:49:37: #1 total tags in treatment: 37533431 INFO @ Fri, 10 Dec 2021 13:49:37: #1 user defined the maximum tags... INFO @ Fri, 10 Dec 2021 13:49:37: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Dec 2021 13:49:38: #1 tags after filtering in treatment: 26267959 INFO @ Fri, 10 Dec 2021 13:49:38: #1 Redundant rate of treatment: 0.30 INFO @ Fri, 10 Dec 2021 13:49:38: #1 finished! INFO @ Fri, 10 Dec 2021 13:49:38: #2 Build Peak Model... INFO @ Fri, 10 Dec 2021 13:49:38: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Dec 2021 13:49:39: 80000000 INFO @ Fri, 10 Dec 2021 13:49:41: #2 number of paired peaks: 100 WARNING @ Fri, 10 Dec 2021 13:49:41: Fewer paired peaks (100) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 100 pairs to build model! INFO @ Fri, 10 Dec 2021 13:49:41: start model_add_line... INFO @ Fri, 10 Dec 2021 13:49:41: start X-correlation... INFO @ Fri, 10 Dec 2021 13:49:41: end of X-cor INFO @ Fri, 10 Dec 2021 13:49:41: #2 finished! INFO @ Fri, 10 Dec 2021 13:49:41: #2 predicted fragment length is 56 bps INFO @ Fri, 10 Dec 2021 13:49:41: #2 alternative fragment length(s) may be 2,56,60,576 bps INFO @ Fri, 10 Dec 2021 13:49:41: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX10367658/SRX10367658.05_model.r WARNING @ Fri, 10 Dec 2021 13:49:41: #2 Since the d (56) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 10 Dec 2021 13:49:41: #2 You may need to consider one of the other alternative d(s): 2,56,60,576 WARNING @ Fri, 10 Dec 2021 13:49:41: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 10 Dec 2021 13:49:41: #3 Call peaks... INFO @ Fri, 10 Dec 2021 13:49:41: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 10 Dec 2021 13:49:41: 84000000 INFO @ Fri, 10 Dec 2021 13:49:55: 81000000 INFO @ Fri, 10 Dec 2021 13:49:57: 85000000 INFO @ Fri, 10 Dec 2021 13:50:11: 82000000 INFO @ Fri, 10 Dec 2021 13:50:13: 86000000 INFO @ Fri, 10 Dec 2021 13:50:26: 83000000 INFO @ Fri, 10 Dec 2021 13:50:27: 87000000 INFO @ Fri, 10 Dec 2021 13:50:41: 84000000 INFO @ Fri, 10 Dec 2021 13:50:43: 88000000 INFO @ Fri, 10 Dec 2021 13:50:58: 85000000 INFO @ Fri, 10 Dec 2021 13:51:01: 89000000 INFO @ Fri, 10 Dec 2021 13:51:13: 86000000 INFO @ Fri, 10 Dec 2021 13:51:15: 90000000 INFO @ Fri, 10 Dec 2021 13:51:21: #3 Call peaks for each chromosome... INFO @ Fri, 10 Dec 2021 13:51:25: 87000000 INFO @ Fri, 10 Dec 2021 13:51:27: 91000000 INFO @ Fri, 10 Dec 2021 13:51:38: 88000000 INFO @ Fri, 10 Dec 2021 13:51:40: 92000000 INFO @ Fri, 10 Dec 2021 13:51:43: #1 tag size is determined as 51 bps INFO @ Fri, 10 Dec 2021 13:51:43: #1 tag size = 51 INFO @ Fri, 10 Dec 2021 13:51:43: #1 total tags in treatment: 37533431 INFO @ Fri, 10 Dec 2021 13:51:43: #1 user defined the maximum tags... INFO @ Fri, 10 Dec 2021 13:51:43: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Dec 2021 13:51:44: #1 tags after filtering in treatment: 26267959 INFO @ Fri, 10 Dec 2021 13:51:44: #1 Redundant rate of treatment: 0.30 INFO @ Fri, 10 Dec 2021 13:51:44: #1 finished! INFO @ Fri, 10 Dec 2021 13:51:44: #2 Build Peak Model... INFO @ Fri, 10 Dec 2021 13:51:44: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Dec 2021 13:51:46: #2 number of paired peaks: 100 WARNING @ Fri, 10 Dec 2021 13:51:46: Fewer paired peaks (100) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 100 pairs to build model! INFO @ Fri, 10 Dec 2021 13:51:46: start model_add_line... INFO @ Fri, 10 Dec 2021 13:51:46: start X-correlation... INFO @ Fri, 10 Dec 2021 13:51:46: end of X-cor INFO @ Fri, 10 Dec 2021 13:51:46: #2 finished! INFO @ Fri, 10 Dec 2021 13:51:46: #2 predicted fragment length is 56 bps INFO @ Fri, 10 Dec 2021 13:51:46: #2 alternative fragment length(s) may be 2,56,60,576 bps INFO @ Fri, 10 Dec 2021 13:51:46: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX10367658/SRX10367658.10_model.r WARNING @ Fri, 10 Dec 2021 13:51:46: #2 Since the d (56) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 10 Dec 2021 13:51:46: #2 You may need to consider one of the other alternative d(s): 2,56,60,576 WARNING @ Fri, 10 Dec 2021 13:51:46: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 10 Dec 2021 13:51:46: #3 Call peaks... INFO @ Fri, 10 Dec 2021 13:51:46: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 10 Dec 2021 13:51:48: 89000000 INFO @ Fri, 10 Dec 2021 13:51:57: 90000000 INFO @ Fri, 10 Dec 2021 13:52:07: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX10367658/SRX10367658.05_peaks.xls INFO @ Fri, 10 Dec 2021 13:52:07: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX10367658/SRX10367658.05_peaks.narrowPeak INFO @ Fri, 10 Dec 2021 13:52:08: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX10367658/SRX10367658.05_summits.bed INFO @ Fri, 10 Dec 2021 13:52:08: Done! pass1 - making usageList (15 chroms): 6 millis pass2 - checking and writing primary data (14346 records, 4 fields): 20 millis INFO @ Fri, 10 Dec 2021 13:52:08: 91000000 CompletedMACS2peakCalling INFO @ Fri, 10 Dec 2021 13:52:16: 92000000 INFO @ Fri, 10 Dec 2021 13:52:18: #1 tag size is determined as 51 bps INFO @ Fri, 10 Dec 2021 13:52:18: #1 tag size = 51 INFO @ Fri, 10 Dec 2021 13:52:18: #1 total tags in treatment: 37533431 INFO @ Fri, 10 Dec 2021 13:52:18: #1 user defined the maximum tags... INFO @ Fri, 10 Dec 2021 13:52:18: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Dec 2021 13:52:19: #1 tags after filtering in treatment: 26267959 INFO @ Fri, 10 Dec 2021 13:52:19: #1 Redundant rate of treatment: 0.30 INFO @ Fri, 10 Dec 2021 13:52:19: #1 finished! INFO @ Fri, 10 Dec 2021 13:52:19: #2 Build Peak Model... INFO @ Fri, 10 Dec 2021 13:52:19: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Dec 2021 13:52:22: #2 number of paired peaks: 100 WARNING @ Fri, 10 Dec 2021 13:52:22: Fewer paired peaks (100) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 100 pairs to build model! INFO @ Fri, 10 Dec 2021 13:52:22: start model_add_line... INFO @ Fri, 10 Dec 2021 13:52:22: start X-correlation... INFO @ Fri, 10 Dec 2021 13:52:22: end of X-cor INFO @ Fri, 10 Dec 2021 13:52:22: #2 finished! INFO @ Fri, 10 Dec 2021 13:52:22: #2 predicted fragment length is 56 bps INFO @ Fri, 10 Dec 2021 13:52:22: #2 alternative fragment length(s) may be 2,56,60,576 bps INFO @ Fri, 10 Dec 2021 13:52:22: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX10367658/SRX10367658.20_model.r WARNING @ Fri, 10 Dec 2021 13:52:22: #2 Since the d (56) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 10 Dec 2021 13:52:22: #2 You may need to consider one of the other alternative d(s): 2,56,60,576 WARNING @ Fri, 10 Dec 2021 13:52:22: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 10 Dec 2021 13:52:22: #3 Call peaks... INFO @ Fri, 10 Dec 2021 13:52:22: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 10 Dec 2021 13:53:10: #3 Call peaks for each chromosome... INFO @ Fri, 10 Dec 2021 13:54:02: #3 Call peaks for each chromosome... INFO @ Fri, 10 Dec 2021 13:54:11: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX10367658/SRX10367658.10_peaks.xls INFO @ Fri, 10 Dec 2021 13:54:11: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX10367658/SRX10367658.10_peaks.narrowPeak INFO @ Fri, 10 Dec 2021 13:54:11: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX10367658/SRX10367658.10_summits.bed INFO @ Fri, 10 Dec 2021 13:54:11: Done! pass1 - making usageList (14 chroms): 4 millis pass2 - checking and writing primary data (6397 records, 4 fields): 10 millis CompletedMACS2peakCalling INFO @ Fri, 10 Dec 2021 13:54:57: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX10367658/SRX10367658.20_peaks.xls INFO @ Fri, 10 Dec 2021 13:54:57: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX10367658/SRX10367658.20_peaks.narrowPeak INFO @ Fri, 10 Dec 2021 13:54:57: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX10367658/SRX10367658.20_summits.bed INFO @ Fri, 10 Dec 2021 13:54:57: Done! pass1 - making usageList (14 chroms): 1 millis pass2 - checking and writing primary data (790 records, 4 fields): 6 millis CompletedMACS2peakCalling