Job ID = 9158108 sra ファイルのダウンロード中... Completed: 3753951K bytes transferred in 27 seconds (1126491K bits/sec), in 7 files, 8 directories. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Written 24798986 spots for /home/okishinya/chipatlas/results/dm3/SRX046652/SRR121517.sra Written 24798986 spots total Written 24970655 spots for /home/okishinya/chipatlas/results/dm3/SRX046652/SRR121518.sra Written 24970655 spots total Written 24569824 spots for /home/okishinya/chipatlas/results/dm3/SRX046652/SRR121519.sra Written 24569824 spots total Written 29100149 spots for /home/okishinya/chipatlas/results/dm3/SRX046652/SRR121522.sra Written 29100149 spots total Written 29775309 spots for /home/okishinya/chipatlas/results/dm3/SRX046652/SRR121523.sra Written 29775309 spots total Written 29721051 spots for /home/okishinya/chipatlas/results/dm3/SRX046652/SRR121520.sra Written 29721051 spots total Written 30371416 spots for /home/okishinya/chipatlas/results/dm3/SRX046652/SRR121521.sra Written 30371416 spots total fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:42:23 193307390 reads; of these: 193307390 (100.00%) were unpaired; of these: 62649805 (32.41%) aligned 0 times 100953344 (52.22%) aligned exactly 1 time 29704241 (15.37%) aligned >1 times 67.59% overall alignment rate Time searching: 00:42:23 Overall time: 00:42:23 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 36 files... [bam_rmdupse_core] 64319566 / 130657585 = 0.4923 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Tue, 27 Jun 2017 16:13:01: # Command line: callpeak -t SRX046652.bam -f BAM -g dm -n SRX046652.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX046652.20 # format = BAM # ChIP-seq file = ['SRX046652.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 27 Jun 2017 16:13:01: #1 read tag files... INFO @ Tue, 27 Jun 2017 16:13:01: #1 read treatment tags... INFO @ Tue, 27 Jun 2017 16:13:01: # Command line: callpeak -t SRX046652.bam -f BAM -g dm -n SRX046652.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX046652.05 # format = BAM # ChIP-seq file = ['SRX046652.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 27 Jun 2017 16:13:01: #1 read tag files... INFO @ Tue, 27 Jun 2017 16:13:01: #1 read treatment tags... INFO @ Tue, 27 Jun 2017 16:13:01: # Command line: callpeak -t SRX046652.bam -f BAM -g dm -n SRX046652.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX046652.10 # format = BAM # ChIP-seq file = ['SRX046652.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 27 Jun 2017 16:13:01: #1 read tag files... INFO @ Tue, 27 Jun 2017 16:13:01: #1 read treatment tags... INFO @ Tue, 27 Jun 2017 16:13:08: 1000000 INFO @ Tue, 27 Jun 2017 16:13:08: 1000000 INFO @ Tue, 27 Jun 2017 16:13:08: 1000000 INFO @ Tue, 27 Jun 2017 16:13:14: 2000000 INFO @ Tue, 27 Jun 2017 16:13:15: 2000000 INFO @ Tue, 27 Jun 2017 16:13:15: 2000000 INFO @ Tue, 27 Jun 2017 16:13:20: 3000000 INFO @ Tue, 27 Jun 2017 16:13:21: 3000000 INFO @ Tue, 27 Jun 2017 16:13:21: 3000000 INFO @ Tue, 27 Jun 2017 16:13:26: 4000000 INFO @ Tue, 27 Jun 2017 16:13:28: 4000000 INFO @ Tue, 27 Jun 2017 16:13:28: 4000000 INFO @ Tue, 27 Jun 2017 16:13:32: 5000000 INFO @ Tue, 27 Jun 2017 16:13:34: 5000000 INFO @ Tue, 27 Jun 2017 16:13:34: 5000000 INFO @ Tue, 27 Jun 2017 16:13:38: 6000000 INFO @ Tue, 27 Jun 2017 16:13:41: 6000000 INFO @ Tue, 27 Jun 2017 16:13:41: 6000000 INFO @ Tue, 27 Jun 2017 16:13:44: 7000000 INFO @ Tue, 27 Jun 2017 16:13:47: 7000000 INFO @ Tue, 27 Jun 2017 16:13:48: 7000000 INFO @ Tue, 27 Jun 2017 16:13:50: 8000000 INFO @ Tue, 27 Jun 2017 16:13:54: 8000000 INFO @ Tue, 27 Jun 2017 16:13:54: 8000000 INFO @ Tue, 27 Jun 2017 16:13:56: 9000000 INFO @ Tue, 27 Jun 2017 16:14:01: 9000000 INFO @ Tue, 27 Jun 2017 16:14:01: 9000000 INFO @ Tue, 27 Jun 2017 16:14:03: 10000000 INFO @ Tue, 27 Jun 2017 16:14:07: 10000000 INFO @ Tue, 27 Jun 2017 16:14:08: 10000000 INFO @ Tue, 27 Jun 2017 16:14:09: 11000000 INFO @ Tue, 27 Jun 2017 16:14:14: 11000000 INFO @ Tue, 27 Jun 2017 16:14:15: 11000000 INFO @ Tue, 27 Jun 2017 16:14:15: 12000000 INFO @ Tue, 27 Jun 2017 16:14:21: 13000000 INFO @ Tue, 27 Jun 2017 16:14:21: 12000000 INFO @ Tue, 27 Jun 2017 16:14:21: 12000000 INFO @ Tue, 27 Jun 2017 16:14:27: 14000000 INFO @ Tue, 27 Jun 2017 16:14:28: 13000000 INFO @ Tue, 27 Jun 2017 16:14:28: 13000000 INFO @ Tue, 27 Jun 2017 16:14:33: 15000000 INFO @ Tue, 27 Jun 2017 16:14:34: 14000000 INFO @ Tue, 27 Jun 2017 16:14:35: 14000000 INFO @ Tue, 27 Jun 2017 16:14:39: 16000000 INFO @ Tue, 27 Jun 2017 16:14:41: 15000000 INFO @ Tue, 27 Jun 2017 16:14:42: 15000000 INFO @ Tue, 27 Jun 2017 16:14:45: 17000000 INFO @ Tue, 27 Jun 2017 16:14:48: 16000000 INFO @ Tue, 27 Jun 2017 16:14:49: 16000000 INFO @ Tue, 27 Jun 2017 16:14:51: 18000000 INFO @ Tue, 27 Jun 2017 16:14:55: 17000000 INFO @ Tue, 27 Jun 2017 16:14:55: 17000000 INFO @ Tue, 27 Jun 2017 16:14:57: 19000000 INFO @ Tue, 27 Jun 2017 16:15:02: 18000000 INFO @ Tue, 27 Jun 2017 16:15:02: 18000000 INFO @ Tue, 27 Jun 2017 16:15:03: 20000000 INFO @ Tue, 27 Jun 2017 16:15:08: 19000000 INFO @ Tue, 27 Jun 2017 16:15:09: 21000000 INFO @ Tue, 27 Jun 2017 16:15:09: 19000000 INFO @ Tue, 27 Jun 2017 16:15:15: 22000000 INFO @ Tue, 27 Jun 2017 16:15:15: 20000000 INFO @ Tue, 27 Jun 2017 16:15:16: 20000000 INFO @ Tue, 27 Jun 2017 16:15:21: 23000000 INFO @ Tue, 27 Jun 2017 16:15:22: 21000000 INFO @ Tue, 27 Jun 2017 16:15:23: 21000000 INFO @ Tue, 27 Jun 2017 16:15:27: 24000000 INFO @ Tue, 27 Jun 2017 16:15:29: 22000000 INFO @ Tue, 27 Jun 2017 16:15:30: 22000000 INFO @ Tue, 27 Jun 2017 16:15:33: 25000000 INFO @ Tue, 27 Jun 2017 16:15:36: 23000000 INFO @ Tue, 27 Jun 2017 16:15:36: 23000000 INFO @ Tue, 27 Jun 2017 16:15:39: 26000000 INFO @ Tue, 27 Jun 2017 16:15:43: 24000000 INFO @ Tue, 27 Jun 2017 16:15:43: 24000000 INFO @ Tue, 27 Jun 2017 16:15:45: 27000000 INFO @ Tue, 27 Jun 2017 16:15:50: 25000000 INFO @ Tue, 27 Jun 2017 16:15:50: 25000000 INFO @ Tue, 27 Jun 2017 16:15:51: 28000000 INFO @ Tue, 27 Jun 2017 16:15:56: 26000000 INFO @ Tue, 27 Jun 2017 16:15:57: 29000000 INFO @ Tue, 27 Jun 2017 16:15:57: 26000000 INFO @ Tue, 27 Jun 2017 16:16:03: 30000000 INFO @ Tue, 27 Jun 2017 16:16:03: 27000000 INFO @ Tue, 27 Jun 2017 16:16:04: 27000000 INFO @ Tue, 27 Jun 2017 16:16:09: 31000000 INFO @ Tue, 27 Jun 2017 16:16:11: 28000000 INFO @ Tue, 27 Jun 2017 16:16:11: 28000000 INFO @ Tue, 27 Jun 2017 16:16:15: 32000000 INFO @ Tue, 27 Jun 2017 16:16:19: 29000000 INFO @ Tue, 27 Jun 2017 16:16:19: 29000000 INFO @ Tue, 27 Jun 2017 16:16:22: 33000000 INFO @ Tue, 27 Jun 2017 16:16:27: 30000000 INFO @ Tue, 27 Jun 2017 16:16:27: 30000000 INFO @ Tue, 27 Jun 2017 16:16:28: 34000000 INFO @ Tue, 27 Jun 2017 16:16:34: 35000000 INFO @ Tue, 27 Jun 2017 16:16:35: 31000000 INFO @ Tue, 27 Jun 2017 16:16:35: 31000000 INFO @ Tue, 27 Jun 2017 16:16:40: 36000000 INFO @ Tue, 27 Jun 2017 16:16:42: 32000000 INFO @ Tue, 27 Jun 2017 16:16:43: 32000000 INFO @ Tue, 27 Jun 2017 16:16:46: 37000000 INFO @ Tue, 27 Jun 2017 16:16:49: 33000000 INFO @ Tue, 27 Jun 2017 16:16:49: 33000000 INFO @ Tue, 27 Jun 2017 16:16:52: 38000000 INFO @ Tue, 27 Jun 2017 16:16:56: 34000000 INFO @ Tue, 27 Jun 2017 16:16:56: 34000000 INFO @ Tue, 27 Jun 2017 16:16:58: 39000000 INFO @ Tue, 27 Jun 2017 16:17:02: 35000000 INFO @ Tue, 27 Jun 2017 16:17:03: 35000000 INFO @ Tue, 27 Jun 2017 16:17:04: 40000000 INFO @ Tue, 27 Jun 2017 16:17:09: 36000000 INFO @ Tue, 27 Jun 2017 16:17:09: 36000000 INFO @ Tue, 27 Jun 2017 16:17:10: 41000000 INFO @ Tue, 27 Jun 2017 16:17:16: 37000000 INFO @ Tue, 27 Jun 2017 16:17:16: 37000000 INFO @ Tue, 27 Jun 2017 16:17:17: 42000000 INFO @ Tue, 27 Jun 2017 16:17:23: 38000000 INFO @ Tue, 27 Jun 2017 16:17:23: 43000000 INFO @ Tue, 27 Jun 2017 16:17:23: 38000000 INFO @ Tue, 27 Jun 2017 16:17:29: 44000000 INFO @ Tue, 27 Jun 2017 16:17:29: 39000000 INFO @ Tue, 27 Jun 2017 16:17:30: 39000000 INFO @ Tue, 27 Jun 2017 16:17:35: 45000000 INFO @ Tue, 27 Jun 2017 16:17:36: 40000000 INFO @ Tue, 27 Jun 2017 16:17:36: 40000000 INFO @ Tue, 27 Jun 2017 16:17:41: 46000000 INFO @ Tue, 27 Jun 2017 16:17:43: 41000000 INFO @ Tue, 27 Jun 2017 16:17:43: 41000000 INFO @ Tue, 27 Jun 2017 16:17:47: 47000000 INFO @ Tue, 27 Jun 2017 16:17:50: 42000000 INFO @ Tue, 27 Jun 2017 16:17:50: 42000000 INFO @ Tue, 27 Jun 2017 16:17:53: 48000000 INFO @ Tue, 27 Jun 2017 16:17:56: 43000000 INFO @ Tue, 27 Jun 2017 16:17:57: 43000000 INFO @ Tue, 27 Jun 2017 16:17:59: 49000000 INFO @ Tue, 27 Jun 2017 16:18:03: 44000000 INFO @ Tue, 27 Jun 2017 16:18:04: 44000000 INFO @ Tue, 27 Jun 2017 16:18:06: 50000000 INFO @ Tue, 27 Jun 2017 16:18:10: 45000000 INFO @ Tue, 27 Jun 2017 16:18:11: 45000000 INFO @ Tue, 27 Jun 2017 16:18:13: 51000000 INFO @ Tue, 27 Jun 2017 16:18:17: 46000000 INFO @ Tue, 27 Jun 2017 16:18:18: 46000000 INFO @ Tue, 27 Jun 2017 16:18:19: 52000000 INFO @ Tue, 27 Jun 2017 16:18:24: 47000000 INFO @ Tue, 27 Jun 2017 16:18:25: 47000000 INFO @ Tue, 27 Jun 2017 16:18:26: 53000000 INFO @ Tue, 27 Jun 2017 16:18:32: 48000000 INFO @ Tue, 27 Jun 2017 16:18:32: 54000000 INFO @ Tue, 27 Jun 2017 16:18:32: 48000000 INFO @ Tue, 27 Jun 2017 16:18:38: 55000000 INFO @ Tue, 27 Jun 2017 16:18:39: 49000000 INFO @ Tue, 27 Jun 2017 16:18:39: 49000000 INFO @ Tue, 27 Jun 2017 16:18:45: 56000000 INFO @ Tue, 27 Jun 2017 16:18:46: 50000000 INFO @ Tue, 27 Jun 2017 16:18:46: 50000000 INFO @ Tue, 27 Jun 2017 16:18:51: 57000000 INFO @ Tue, 27 Jun 2017 16:18:53: 51000000 INFO @ Tue, 27 Jun 2017 16:18:54: 51000000 INFO @ Tue, 27 Jun 2017 16:18:57: 58000000 INFO @ Tue, 27 Jun 2017 16:19:00: 52000000 INFO @ Tue, 27 Jun 2017 16:19:01: 52000000 INFO @ Tue, 27 Jun 2017 16:19:04: 59000000 INFO @ Tue, 27 Jun 2017 16:19:08: 53000000 INFO @ Tue, 27 Jun 2017 16:19:08: 53000000 INFO @ Tue, 27 Jun 2017 16:19:10: 60000000 INFO @ Tue, 27 Jun 2017 16:19:15: 54000000 INFO @ Tue, 27 Jun 2017 16:19:15: 54000000 INFO @ Tue, 27 Jun 2017 16:19:16: 61000000 INFO @ Tue, 27 Jun 2017 16:19:22: 55000000 INFO @ Tue, 27 Jun 2017 16:19:22: 55000000 INFO @ Tue, 27 Jun 2017 16:19:23: 62000000 INFO @ Tue, 27 Jun 2017 16:19:29: 63000000 INFO @ Tue, 27 Jun 2017 16:19:29: 56000000 INFO @ Tue, 27 Jun 2017 16:19:30: 56000000 INFO @ Tue, 27 Jun 2017 16:19:35: 64000000 INFO @ Tue, 27 Jun 2017 16:19:36: 57000000 INFO @ Tue, 27 Jun 2017 16:19:37: 57000000 INFO @ Tue, 27 Jun 2017 16:19:42: 65000000 INFO @ Tue, 27 Jun 2017 16:19:43: 58000000 INFO @ Tue, 27 Jun 2017 16:19:44: 58000000 INFO @ Tue, 27 Jun 2017 16:19:48: 66000000 INFO @ Tue, 27 Jun 2017 16:19:50: 59000000 INFO @ Tue, 27 Jun 2017 16:19:51: #1 tag size is determined as 36 bps INFO @ Tue, 27 Jun 2017 16:19:51: #1 tag size = 36 INFO @ Tue, 27 Jun 2017 16:19:51: #1 total tags in treatment: 66338019 INFO @ Tue, 27 Jun 2017 16:19:51: #1 user defined the maximum tags... INFO @ Tue, 27 Jun 2017 16:19:51: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 27 Jun 2017 16:19:51: 59000000 INFO @ Tue, 27 Jun 2017 16:19:52: #1 tags after filtering in treatment: 66338019 INFO @ Tue, 27 Jun 2017 16:19:52: #1 Redundant rate of treatment: 0.00 INFO @ Tue, 27 Jun 2017 16:19:52: #1 finished! INFO @ Tue, 27 Jun 2017 16:19:52: #2 Build Peak Model... INFO @ Tue, 27 Jun 2017 16:19:52: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 27 Jun 2017 16:19:56: #2 number of paired peaks: 0 WARNING @ Tue, 27 Jun 2017 16:19:56: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Tue, 27 Jun 2017 16:19:56: Process for pairing-model is terminated! cat: SRX046652.05_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX046652.05_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX046652.05_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX046652.05_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Tue, 27 Jun 2017 16:19:58: 60000000 INFO @ Tue, 27 Jun 2017 16:19:58: 60000000 INFO @ Tue, 27 Jun 2017 16:20:05: 61000000 INFO @ Tue, 27 Jun 2017 16:20:05: 61000000 INFO @ Tue, 27 Jun 2017 16:20:12: 62000000 INFO @ Tue, 27 Jun 2017 16:20:12: 62000000 INFO @ Tue, 27 Jun 2017 16:20:19: 63000000 INFO @ Tue, 27 Jun 2017 16:20:19: 63000000 INFO @ Tue, 27 Jun 2017 16:20:26: 64000000 INFO @ Tue, 27 Jun 2017 16:20:26: 64000000 INFO @ Tue, 27 Jun 2017 16:20:33: 65000000 INFO @ Tue, 27 Jun 2017 16:20:33: 65000000 INFO @ Tue, 27 Jun 2017 16:20:40: 66000000 INFO @ Tue, 27 Jun 2017 16:20:40: 66000000 INFO @ Tue, 27 Jun 2017 16:20:42: #1 tag size is determined as 36 bps INFO @ Tue, 27 Jun 2017 16:20:42: #1 tag size = 36 INFO @ Tue, 27 Jun 2017 16:20:42: #1 total tags in treatment: 66338019 INFO @ Tue, 27 Jun 2017 16:20:42: #1 user defined the maximum tags... INFO @ Tue, 27 Jun 2017 16:20:42: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 27 Jun 2017 16:20:43: #1 tag size is determined as 36 bps INFO @ Tue, 27 Jun 2017 16:20:43: #1 tag size = 36 INFO @ Tue, 27 Jun 2017 16:20:43: #1 total tags in treatment: 66338019 INFO @ Tue, 27 Jun 2017 16:20:43: #1 user defined the maximum tags... INFO @ Tue, 27 Jun 2017 16:20:43: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 27 Jun 2017 16:20:44: #1 tags after filtering in treatment: 66338019 INFO @ Tue, 27 Jun 2017 16:20:44: #1 Redundant rate of treatment: 0.00 INFO @ Tue, 27 Jun 2017 16:20:44: #1 finished! INFO @ Tue, 27 Jun 2017 16:20:44: #2 Build Peak Model... INFO @ Tue, 27 Jun 2017 16:20:44: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 27 Jun 2017 16:20:44: #1 tags after filtering in treatment: 66338019 INFO @ Tue, 27 Jun 2017 16:20:44: #1 Redundant rate of treatment: 0.00 INFO @ Tue, 27 Jun 2017 16:20:44: #1 finished! INFO @ Tue, 27 Jun 2017 16:20:44: #2 Build Peak Model... INFO @ Tue, 27 Jun 2017 16:20:44: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 27 Jun 2017 16:20:48: #2 number of paired peaks: 0 WARNING @ Tue, 27 Jun 2017 16:20:48: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Tue, 27 Jun 2017 16:20:48: Process for pairing-model is terminated! cat: SRX046652.20_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX046652.20_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX046652.20_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX046652.20_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Tue, 27 Jun 2017 16:20:48: #2 number of paired peaks: 0 WARNING @ Tue, 27 Jun 2017 16:20:48: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Tue, 27 Jun 2017 16:20:48: Process for pairing-model is terminated! cat: SRX046652.10_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 0 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX046652.10_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX046652.10_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX046652.10_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。