Job ID = 16439824 SRX = ERX5970269 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2022-08-02T07:15:54 prefetch.2.10.7: 1) Downloading 'ERR6338592'... 2022-08-02T07:15:54 prefetch.2.10.7: Downloading via HTTPS... 2022-08-02T07:20:15 prefetch.2.10.7: HTTPS download succeed 2022-08-02T07:20:15 prefetch.2.10.7: 1) 'ERR6338592' was downloaded successfully 2022-08-02T07:20:15 prefetch.2.10.7: 'ERR6338592' has 0 unresolved dependencies Read 34383495 spots for ERR6338592/ERR6338592.sra Written 34383495 spots for ERR6338592/ERR6338592.sra fastq に変換しました。 bowtie でマッピング中... Your job 16440889 ("srTdm6") has been submitted Time loading reference: 00:00:01 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:33:25 34383495 reads; of these: 34383495 (100.00%) were paired; of these: 4297745 (12.50%) aligned concordantly 0 times 24876531 (72.35%) aligned concordantly exactly 1 time 5209219 (15.15%) aligned concordantly >1 times ---- 4297745 pairs aligned concordantly 0 times; of these: 2317115 (53.91%) aligned discordantly 1 time ---- 1980630 pairs aligned 0 times concordantly or discordantly; of these: 3961260 mates make up the pairs; of these: 1984913 (50.11%) aligned 0 times 918257 (23.18%) aligned exactly 1 time 1058090 (26.71%) aligned >1 times 97.11% overall alignment rate Time searching: 01:33:26 Overall time: 01:33:26 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 52 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 2715517 / 26937993 = 0.1008 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 18:31:25: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/ERX5970269/ERX5970269.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/ERX5970269/ERX5970269.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/ERX5970269/ERX5970269.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/ERX5970269/ERX5970269.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 18:31:25: #1 read tag files... INFO @ Tue, 02 Aug 2022 18:31:25: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 18:31:35: 1000000 INFO @ Tue, 02 Aug 2022 18:31:44: 2000000 INFO @ Tue, 02 Aug 2022 18:31:53: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 18:31:55: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/ERX5970269/ERX5970269.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/ERX5970269/ERX5970269.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/ERX5970269/ERX5970269.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/ERX5970269/ERX5970269.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 18:31:55: #1 read tag files... INFO @ Tue, 02 Aug 2022 18:31:55: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 18:32:03: 4000000 INFO @ Tue, 02 Aug 2022 18:32:06: 1000000 INFO @ Tue, 02 Aug 2022 18:32:13: 5000000 INFO @ Tue, 02 Aug 2022 18:32:16: 2000000 INFO @ Tue, 02 Aug 2022 18:32:23: 6000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 18:32:26: 3000000 INFO @ Tue, 02 Aug 2022 18:32:26: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/ERX5970269/ERX5970269.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/ERX5970269/ERX5970269.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/ERX5970269/ERX5970269.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/ERX5970269/ERX5970269.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 18:32:26: #1 read tag files... INFO @ Tue, 02 Aug 2022 18:32:26: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 18:32:34: 7000000 INFO @ Tue, 02 Aug 2022 18:32:36: 4000000 INFO @ Tue, 02 Aug 2022 18:32:36: 1000000 INFO @ Tue, 02 Aug 2022 18:32:44: 8000000 INFO @ Tue, 02 Aug 2022 18:32:46: 5000000 INFO @ Tue, 02 Aug 2022 18:32:46: 2000000 INFO @ Tue, 02 Aug 2022 18:32:55: 9000000 INFO @ Tue, 02 Aug 2022 18:32:56: 6000000 INFO @ Tue, 02 Aug 2022 18:32:57: 3000000 INFO @ Tue, 02 Aug 2022 18:33:05: 10000000 INFO @ Tue, 02 Aug 2022 18:33:07: 7000000 INFO @ Tue, 02 Aug 2022 18:33:07: 4000000 INFO @ Tue, 02 Aug 2022 18:33:16: 11000000 INFO @ Tue, 02 Aug 2022 18:33:17: 8000000 INFO @ Tue, 02 Aug 2022 18:33:17: 5000000 INFO @ Tue, 02 Aug 2022 18:33:27: 12000000 INFO @ Tue, 02 Aug 2022 18:33:27: 9000000 INFO @ Tue, 02 Aug 2022 18:33:28: 6000000 INFO @ Tue, 02 Aug 2022 18:33:37: 13000000 INFO @ Tue, 02 Aug 2022 18:33:37: 10000000 INFO @ Tue, 02 Aug 2022 18:33:38: 7000000 INFO @ Tue, 02 Aug 2022 18:33:48: 11000000 INFO @ Tue, 02 Aug 2022 18:33:48: 14000000 INFO @ Tue, 02 Aug 2022 18:33:51: 8000000 INFO @ Tue, 02 Aug 2022 18:34:00: 12000000 INFO @ Tue, 02 Aug 2022 18:34:01: 15000000 INFO @ Tue, 02 Aug 2022 18:34:01: 9000000 INFO @ Tue, 02 Aug 2022 18:34:11: 13000000 INFO @ Tue, 02 Aug 2022 18:34:11: 16000000 INFO @ Tue, 02 Aug 2022 18:34:12: 10000000 INFO @ Tue, 02 Aug 2022 18:34:21: 14000000 INFO @ Tue, 02 Aug 2022 18:34:22: 17000000 INFO @ Tue, 02 Aug 2022 18:34:23: 11000000 INFO @ Tue, 02 Aug 2022 18:34:32: 15000000 INFO @ Tue, 02 Aug 2022 18:34:34: 18000000 INFO @ Tue, 02 Aug 2022 18:34:34: 12000000 INFO @ Tue, 02 Aug 2022 18:34:42: 16000000 INFO @ Tue, 02 Aug 2022 18:34:45: 19000000 INFO @ Tue, 02 Aug 2022 18:34:45: 13000000 INFO @ Tue, 02 Aug 2022 18:34:53: 17000000 INFO @ Tue, 02 Aug 2022 18:34:55: 14000000 INFO @ Tue, 02 Aug 2022 18:34:56: 20000000 INFO @ Tue, 02 Aug 2022 18:35:03: 18000000 INFO @ Tue, 02 Aug 2022 18:35:06: 15000000 INFO @ Tue, 02 Aug 2022 18:35:07: 21000000 INFO @ Tue, 02 Aug 2022 18:35:13: 19000000 INFO @ Tue, 02 Aug 2022 18:35:16: 16000000 INFO @ Tue, 02 Aug 2022 18:35:18: 22000000 INFO @ Tue, 02 Aug 2022 18:35:23: 20000000 INFO @ Tue, 02 Aug 2022 18:35:27: 17000000 INFO @ Tue, 02 Aug 2022 18:35:29: 23000000 INFO @ Tue, 02 Aug 2022 18:35:34: 21000000 INFO @ Tue, 02 Aug 2022 18:35:38: 18000000 INFO @ Tue, 02 Aug 2022 18:35:40: 24000000 INFO @ Tue, 02 Aug 2022 18:35:44: 22000000 INFO @ Tue, 02 Aug 2022 18:35:49: 19000000 INFO @ Tue, 02 Aug 2022 18:35:51: 25000000 INFO @ Tue, 02 Aug 2022 18:35:55: 23000000 INFO @ Tue, 02 Aug 2022 18:36:00: 20000000 INFO @ Tue, 02 Aug 2022 18:36:02: 26000000 INFO @ Tue, 02 Aug 2022 18:36:06: 24000000 INFO @ Tue, 02 Aug 2022 18:36:11: 21000000 INFO @ Tue, 02 Aug 2022 18:36:14: 27000000 INFO @ Tue, 02 Aug 2022 18:36:16: 25000000 INFO @ Tue, 02 Aug 2022 18:36:22: 22000000 INFO @ Tue, 02 Aug 2022 18:36:25: 28000000 INFO @ Tue, 02 Aug 2022 18:36:27: 26000000 INFO @ Tue, 02 Aug 2022 18:36:33: 23000000 INFO @ Tue, 02 Aug 2022 18:36:36: 29000000 INFO @ Tue, 02 Aug 2022 18:36:38: 27000000 INFO @ Tue, 02 Aug 2022 18:36:44: 24000000 INFO @ Tue, 02 Aug 2022 18:36:48: 30000000 INFO @ Tue, 02 Aug 2022 18:36:49: 28000000 INFO @ Tue, 02 Aug 2022 18:36:54: 25000000 INFO @ Tue, 02 Aug 2022 18:36:59: 31000000 INFO @ Tue, 02 Aug 2022 18:37:00: 29000000 INFO @ Tue, 02 Aug 2022 18:37:05: 26000000 INFO @ Tue, 02 Aug 2022 18:37:10: 32000000 INFO @ Tue, 02 Aug 2022 18:37:10: 30000000 INFO @ Tue, 02 Aug 2022 18:37:16: 27000000 INFO @ Tue, 02 Aug 2022 18:37:21: 31000000 INFO @ Tue, 02 Aug 2022 18:37:21: 33000000 INFO @ Tue, 02 Aug 2022 18:37:27: 28000000 INFO @ Tue, 02 Aug 2022 18:37:32: 32000000 INFO @ Tue, 02 Aug 2022 18:37:32: 34000000 INFO @ Tue, 02 Aug 2022 18:37:38: 29000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 02 Aug 2022 18:37:43: 33000000 INFO @ Tue, 02 Aug 2022 18:37:44: 35000000 INFO @ Tue, 02 Aug 2022 18:37:49: 30000000 INFO @ Tue, 02 Aug 2022 18:37:55: 34000000 INFO @ Tue, 02 Aug 2022 18:37:56: 36000000 INFO @ Tue, 02 Aug 2022 18:38:00: 31000000 INFO @ Tue, 02 Aug 2022 18:38:06: 35000000 INFO @ Tue, 02 Aug 2022 18:38:08: 37000000 INFO @ Tue, 02 Aug 2022 18:38:11: 32000000 INFO @ Tue, 02 Aug 2022 18:38:17: 36000000 INFO @ Tue, 02 Aug 2022 18:38:19: 38000000 INFO @ Tue, 02 Aug 2022 18:38:22: 33000000 INFO @ Tue, 02 Aug 2022 18:38:28: 37000000 INFO @ Tue, 02 Aug 2022 18:38:30: 39000000 INFO @ Tue, 02 Aug 2022 18:38:33: 34000000 INFO @ Tue, 02 Aug 2022 18:38:38: 38000000 INFO @ Tue, 02 Aug 2022 18:38:42: 40000000 INFO @ Tue, 02 Aug 2022 18:38:44: 35000000 INFO @ Tue, 02 Aug 2022 18:38:49: 39000000 INFO @ Tue, 02 Aug 2022 18:38:53: 41000000 INFO @ Tue, 02 Aug 2022 18:38:55: 36000000 INFO @ Tue, 02 Aug 2022 18:39:00: 40000000 INFO @ Tue, 02 Aug 2022 18:39:04: 42000000 INFO @ Tue, 02 Aug 2022 18:39:05: 37000000 BigWig に変換しました。 INFO @ Tue, 02 Aug 2022 18:39:11: 41000000 INFO @ Tue, 02 Aug 2022 18:39:15: 43000000 INFO @ Tue, 02 Aug 2022 18:39:16: 38000000 INFO @ Tue, 02 Aug 2022 18:39:22: 42000000 INFO @ Tue, 02 Aug 2022 18:39:27: 44000000 INFO @ Tue, 02 Aug 2022 18:39:27: 39000000 INFO @ Tue, 02 Aug 2022 18:39:32: 43000000 INFO @ Tue, 02 Aug 2022 18:39:38: 40000000 INFO @ Tue, 02 Aug 2022 18:39:38: 45000000 INFO @ Tue, 02 Aug 2022 18:39:43: 44000000 INFO @ Tue, 02 Aug 2022 18:39:48: 41000000 INFO @ Tue, 02 Aug 2022 18:39:49: 46000000 INFO @ Tue, 02 Aug 2022 18:39:53: 45000000 INFO @ Tue, 02 Aug 2022 18:39:59: 42000000 INFO @ Tue, 02 Aug 2022 18:40:00: 47000000 INFO @ Tue, 02 Aug 2022 18:40:04: 46000000 INFO @ Tue, 02 Aug 2022 18:40:09: 43000000 INFO @ Tue, 02 Aug 2022 18:40:12: 48000000 INFO @ Tue, 02 Aug 2022 18:40:15: 47000000 INFO @ Tue, 02 Aug 2022 18:40:20: 44000000 INFO @ Tue, 02 Aug 2022 18:40:23: 49000000 INFO @ Tue, 02 Aug 2022 18:40:26: 48000000 INFO @ Tue, 02 Aug 2022 18:40:30: 45000000 INFO @ Tue, 02 Aug 2022 18:40:34: 50000000 INFO @ Tue, 02 Aug 2022 18:40:37: 49000000 INFO @ Tue, 02 Aug 2022 18:40:41: 46000000 INFO @ Tue, 02 Aug 2022 18:40:45: 51000000 INFO @ Tue, 02 Aug 2022 18:40:47: 50000000 INFO @ Tue, 02 Aug 2022 18:40:51: 47000000 INFO @ Tue, 02 Aug 2022 18:40:56: 52000000 INFO @ Tue, 02 Aug 2022 18:40:58: 51000000 INFO @ Tue, 02 Aug 2022 18:41:02: 48000000 INFO @ Tue, 02 Aug 2022 18:41:07: 53000000 INFO @ Tue, 02 Aug 2022 18:41:09: 52000000 INFO @ Tue, 02 Aug 2022 18:41:13: 49000000 INFO @ Tue, 02 Aug 2022 18:41:18: 54000000 INFO @ Tue, 02 Aug 2022 18:41:20: 53000000 INFO @ Tue, 02 Aug 2022 18:41:24: 50000000 INFO @ Tue, 02 Aug 2022 18:41:28: 55000000 INFO @ Tue, 02 Aug 2022 18:41:30: 54000000 INFO @ Tue, 02 Aug 2022 18:41:35: 51000000 INFO @ Tue, 02 Aug 2022 18:41:39: 56000000 INFO @ Tue, 02 Aug 2022 18:41:41: 55000000 INFO @ Tue, 02 Aug 2022 18:41:46: 52000000 INFO @ Tue, 02 Aug 2022 18:41:50: 57000000 INFO @ Tue, 02 Aug 2022 18:41:52: 56000000 INFO @ Tue, 02 Aug 2022 18:41:56: 53000000 INFO @ Tue, 02 Aug 2022 18:42:01: 58000000 INFO @ Tue, 02 Aug 2022 18:42:02: 57000000 INFO @ Tue, 02 Aug 2022 18:42:07: 54000000 INFO @ Tue, 02 Aug 2022 18:42:12: 59000000 INFO @ Tue, 02 Aug 2022 18:42:13: 58000000 INFO @ Tue, 02 Aug 2022 18:42:18: 55000000 INFO @ Tue, 02 Aug 2022 18:42:23: 60000000 INFO @ Tue, 02 Aug 2022 18:42:23: 59000000 INFO @ Tue, 02 Aug 2022 18:42:28: 56000000 INFO @ Tue, 02 Aug 2022 18:42:34: 61000000 INFO @ Tue, 02 Aug 2022 18:42:34: 60000000 INFO @ Tue, 02 Aug 2022 18:42:38: #1 tag size is determined as 127 bps INFO @ Tue, 02 Aug 2022 18:42:38: #1 tag size = 127 INFO @ Tue, 02 Aug 2022 18:42:38: #1 total tags in treatment: 27549290 INFO @ Tue, 02 Aug 2022 18:42:38: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 18:42:38: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 18:42:38: #1 tags after filtering in treatment: 24319249 INFO @ Tue, 02 Aug 2022 18:42:38: #1 Redundant rate of treatment: 0.12 INFO @ Tue, 02 Aug 2022 18:42:38: #1 finished! INFO @ Tue, 02 Aug 2022 18:42:38: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 18:42:38: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 18:42:39: 57000000 INFO @ Tue, 02 Aug 2022 18:42:40: #2 number of paired peaks: 1135 INFO @ Tue, 02 Aug 2022 18:42:40: start model_add_line... INFO @ Tue, 02 Aug 2022 18:42:40: start X-correlation... INFO @ Tue, 02 Aug 2022 18:42:40: end of X-cor INFO @ Tue, 02 Aug 2022 18:42:40: #2 finished! INFO @ Tue, 02 Aug 2022 18:42:40: #2 predicted fragment length is 222 bps INFO @ Tue, 02 Aug 2022 18:42:40: #2 alternative fragment length(s) may be 2,200,222 bps INFO @ Tue, 02 Aug 2022 18:42:40: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/ERX5970269/ERX5970269.05_model.r WARNING @ Tue, 02 Aug 2022 18:42:40: #2 Since the d (222) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 18:42:40: #2 You may need to consider one of the other alternative d(s): 2,200,222 WARNING @ Tue, 02 Aug 2022 18:42:40: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 18:42:40: #3 Call peaks... INFO @ Tue, 02 Aug 2022 18:42:40: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 18:42:45: 61000000 INFO @ Tue, 02 Aug 2022 18:42:49: #1 tag size is determined as 127 bps INFO @ Tue, 02 Aug 2022 18:42:49: #1 tag size = 127 INFO @ Tue, 02 Aug 2022 18:42:49: #1 total tags in treatment: 27549290 INFO @ Tue, 02 Aug 2022 18:42:49: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 18:42:49: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 18:42:49: #1 tags after filtering in treatment: 24319249 INFO @ Tue, 02 Aug 2022 18:42:49: #1 Redundant rate of treatment: 0.12 INFO @ Tue, 02 Aug 2022 18:42:49: #1 finished! INFO @ Tue, 02 Aug 2022 18:42:49: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 18:42:49: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 18:42:49: 58000000 INFO @ Tue, 02 Aug 2022 18:42:51: #2 number of paired peaks: 1135 INFO @ Tue, 02 Aug 2022 18:42:51: start model_add_line... INFO @ Tue, 02 Aug 2022 18:42:51: start X-correlation... INFO @ Tue, 02 Aug 2022 18:42:51: end of X-cor INFO @ Tue, 02 Aug 2022 18:42:51: #2 finished! INFO @ Tue, 02 Aug 2022 18:42:51: #2 predicted fragment length is 222 bps INFO @ Tue, 02 Aug 2022 18:42:51: #2 alternative fragment length(s) may be 2,200,222 bps INFO @ Tue, 02 Aug 2022 18:42:51: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/ERX5970269/ERX5970269.10_model.r WARNING @ Tue, 02 Aug 2022 18:42:51: #2 Since the d (222) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 18:42:51: #2 You may need to consider one of the other alternative d(s): 2,200,222 WARNING @ Tue, 02 Aug 2022 18:42:51: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 18:42:51: #3 Call peaks... INFO @ Tue, 02 Aug 2022 18:42:51: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 18:42:58: 59000000 INFO @ Tue, 02 Aug 2022 18:43:07: 60000000 INFO @ Tue, 02 Aug 2022 18:43:16: 61000000 INFO @ Tue, 02 Aug 2022 18:43:19: #1 tag size is determined as 127 bps INFO @ Tue, 02 Aug 2022 18:43:19: #1 tag size = 127 INFO @ Tue, 02 Aug 2022 18:43:19: #1 total tags in treatment: 27549290 INFO @ Tue, 02 Aug 2022 18:43:19: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 18:43:19: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 18:43:20: #1 tags after filtering in treatment: 24319249 INFO @ Tue, 02 Aug 2022 18:43:20: #1 Redundant rate of treatment: 0.12 INFO @ Tue, 02 Aug 2022 18:43:20: #1 finished! INFO @ Tue, 02 Aug 2022 18:43:20: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 18:43:20: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 18:43:21: #2 number of paired peaks: 1135 INFO @ Tue, 02 Aug 2022 18:43:21: start model_add_line... INFO @ Tue, 02 Aug 2022 18:43:21: start X-correlation... INFO @ Tue, 02 Aug 2022 18:43:21: end of X-cor INFO @ Tue, 02 Aug 2022 18:43:21: #2 finished! INFO @ Tue, 02 Aug 2022 18:43:21: #2 predicted fragment length is 222 bps INFO @ Tue, 02 Aug 2022 18:43:21: #2 alternative fragment length(s) may be 2,200,222 bps INFO @ Tue, 02 Aug 2022 18:43:21: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/ERX5970269/ERX5970269.20_model.r WARNING @ Tue, 02 Aug 2022 18:43:22: #2 Since the d (222) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 18:43:22: #2 You may need to consider one of the other alternative d(s): 2,200,222 WARNING @ Tue, 02 Aug 2022 18:43:22: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 18:43:22: #3 Call peaks... INFO @ Tue, 02 Aug 2022 18:43:22: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 18:43:35: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 18:43:46: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 18:43:59: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/ERX5970269/ERX5970269.05_peaks.xls INFO @ Tue, 02 Aug 2022 18:43:59: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/ERX5970269/ERX5970269.05_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 18:43:59: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/ERX5970269/ERX5970269.05_summits.bed INFO @ Tue, 02 Aug 2022 18:43:59: Done! pass1 - making usageList (13 chroms): 1 millis pass2 - checking and writing primary data (2275 records, 4 fields): 18 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 18:44:10: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/ERX5970269/ERX5970269.10_peaks.xls INFO @ Tue, 02 Aug 2022 18:44:10: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/ERX5970269/ERX5970269.10_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 18:44:10: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/ERX5970269/ERX5970269.10_summits.bed INFO @ Tue, 02 Aug 2022 18:44:10: Done! pass1 - making usageList (13 chroms): 1 millis pass2 - checking and writing primary data (904 records, 4 fields): 12 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 18:44:15: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 18:44:38: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/ERX5970269/ERX5970269.20_peaks.xls INFO @ Tue, 02 Aug 2022 18:44:38: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/ERX5970269/ERX5970269.20_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 18:44:38: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/ERX5970269/ERX5970269.20_summits.bed INFO @ Tue, 02 Aug 2022 18:44:38: Done! pass1 - making usageList (12 chroms): 1 millis pass2 - checking and writing primary data (353 records, 4 fields): 2 millis CompletedMACS2peakCalling