Job ID = 16437475 SRX = ERX5847869 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2022-08-02T03:39:10 prefetch.2.10.7: 1) Downloading 'ERR6212879'... 2022-08-02T03:39:10 prefetch.2.10.7: Downloading via HTTPS... 2022-08-02T03:41:25 prefetch.2.10.7: HTTPS download succeed 2022-08-02T03:41:25 prefetch.2.10.7: 1) 'ERR6212879' was downloaded successfully 2022-08-02T03:41:25 prefetch.2.10.7: 'ERR6212879' has 0 unresolved dependencies Read 52190334 spots for ERR6212879/ERR6212879.sra Written 52190334 spots for ERR6212879/ERR6212879.sra fastq に変換しました。 bowtie でマッピング中... Your job 16438149 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:52:45 52190334 reads; of these: 52190334 (100.00%) were paired; of these: 3120808 (5.98%) aligned concordantly 0 times 45361275 (86.92%) aligned concordantly exactly 1 time 3708251 (7.11%) aligned concordantly >1 times ---- 3120808 pairs aligned concordantly 0 times; of these: 482951 (15.48%) aligned discordantly 1 time ---- 2637857 pairs aligned 0 times concordantly or discordantly; of these: 5275714 mates make up the pairs; of these: 4433921 (84.04%) aligned 0 times 675001 (12.79%) aligned exactly 1 time 166792 (3.16%) aligned >1 times 95.75% overall alignment rate Time searching: 00:52:45 Overall time: 00:52:45 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 44 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 3486102 / 49513779 = 0.0704 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 14:08:22: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/ERX5847869/ERX5847869.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/ERX5847869/ERX5847869.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/ERX5847869/ERX5847869.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/ERX5847869/ERX5847869.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 14:08:22: #1 read tag files... INFO @ Tue, 02 Aug 2022 14:08:22: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 14:08:30: 1000000 INFO @ Tue, 02 Aug 2022 14:08:37: 2000000 INFO @ Tue, 02 Aug 2022 14:08:43: 3000000 INFO @ Tue, 02 Aug 2022 14:08:50: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 14:08:52: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/ERX5847869/ERX5847869.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/ERX5847869/ERX5847869.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/ERX5847869/ERX5847869.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/ERX5847869/ERX5847869.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 14:08:52: #1 read tag files... INFO @ Tue, 02 Aug 2022 14:08:52: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 14:08:57: 5000000 INFO @ Tue, 02 Aug 2022 14:09:00: 1000000 INFO @ Tue, 02 Aug 2022 14:09:04: 6000000 INFO @ Tue, 02 Aug 2022 14:09:07: 2000000 INFO @ Tue, 02 Aug 2022 14:09:11: 7000000 INFO @ Tue, 02 Aug 2022 14:09:14: 3000000 INFO @ Tue, 02 Aug 2022 14:09:18: 8000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 14:09:20: 4000000 INFO @ Tue, 02 Aug 2022 14:09:22: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/ERX5847869/ERX5847869.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/ERX5847869/ERX5847869.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/ERX5847869/ERX5847869.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/ERX5847869/ERX5847869.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 14:09:22: #1 read tag files... INFO @ Tue, 02 Aug 2022 14:09:22: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 14:09:25: 9000000 INFO @ Tue, 02 Aug 2022 14:09:27: 5000000 INFO @ Tue, 02 Aug 2022 14:09:30: 1000000 INFO @ Tue, 02 Aug 2022 14:09:33: 10000000 INFO @ Tue, 02 Aug 2022 14:09:33: 6000000 INFO @ Tue, 02 Aug 2022 14:09:38: 2000000 INFO @ Tue, 02 Aug 2022 14:09:39: 7000000 INFO @ Tue, 02 Aug 2022 14:09:40: 11000000 INFO @ Tue, 02 Aug 2022 14:09:45: 3000000 INFO @ Tue, 02 Aug 2022 14:09:46: 8000000 INFO @ Tue, 02 Aug 2022 14:09:48: 12000000 INFO @ Tue, 02 Aug 2022 14:09:52: 9000000 INFO @ Tue, 02 Aug 2022 14:09:53: 4000000 INFO @ Tue, 02 Aug 2022 14:09:56: 13000000 INFO @ Tue, 02 Aug 2022 14:09:58: 10000000 INFO @ Tue, 02 Aug 2022 14:10:00: 5000000 INFO @ Tue, 02 Aug 2022 14:10:03: 14000000 INFO @ Tue, 02 Aug 2022 14:10:04: 11000000 INFO @ Tue, 02 Aug 2022 14:10:08: 6000000 INFO @ Tue, 02 Aug 2022 14:10:11: 15000000 INFO @ Tue, 02 Aug 2022 14:10:11: 12000000 INFO @ Tue, 02 Aug 2022 14:10:16: 7000000 INFO @ Tue, 02 Aug 2022 14:10:17: 13000000 INFO @ Tue, 02 Aug 2022 14:10:18: 16000000 INFO @ Tue, 02 Aug 2022 14:10:23: 8000000 INFO @ Tue, 02 Aug 2022 14:10:23: 14000000 INFO @ Tue, 02 Aug 2022 14:10:26: 17000000 INFO @ Tue, 02 Aug 2022 14:10:30: 15000000 INFO @ Tue, 02 Aug 2022 14:10:31: 9000000 INFO @ Tue, 02 Aug 2022 14:10:34: 18000000 INFO @ Tue, 02 Aug 2022 14:10:36: 16000000 INFO @ Tue, 02 Aug 2022 14:10:38: 10000000 INFO @ Tue, 02 Aug 2022 14:10:41: 19000000 INFO @ Tue, 02 Aug 2022 14:10:42: 17000000 INFO @ Tue, 02 Aug 2022 14:10:46: 11000000 INFO @ Tue, 02 Aug 2022 14:10:48: 20000000 INFO @ Tue, 02 Aug 2022 14:10:48: 18000000 INFO @ Tue, 02 Aug 2022 14:10:53: 12000000 INFO @ Tue, 02 Aug 2022 14:10:55: 19000000 INFO @ Tue, 02 Aug 2022 14:10:55: 21000000 INFO @ Tue, 02 Aug 2022 14:11:00: 13000000 INFO @ Tue, 02 Aug 2022 14:11:01: 20000000 INFO @ Tue, 02 Aug 2022 14:11:03: 22000000 INFO @ Tue, 02 Aug 2022 14:11:07: 21000000 INFO @ Tue, 02 Aug 2022 14:11:08: 14000000 INFO @ Tue, 02 Aug 2022 14:11:10: 23000000 INFO @ Tue, 02 Aug 2022 14:11:14: 22000000 INFO @ Tue, 02 Aug 2022 14:11:16: 15000000 INFO @ Tue, 02 Aug 2022 14:11:17: 24000000 INFO @ Tue, 02 Aug 2022 14:11:20: 23000000 INFO @ Tue, 02 Aug 2022 14:11:23: 16000000 INFO @ Tue, 02 Aug 2022 14:11:24: 25000000 INFO @ Tue, 02 Aug 2022 14:11:26: 24000000 INFO @ Tue, 02 Aug 2022 14:11:31: 17000000 INFO @ Tue, 02 Aug 2022 14:11:32: 26000000 INFO @ Tue, 02 Aug 2022 14:11:32: 25000000 INFO @ Tue, 02 Aug 2022 14:11:38: 18000000 INFO @ Tue, 02 Aug 2022 14:11:39: 26000000 INFO @ Tue, 02 Aug 2022 14:11:39: 27000000 INFO @ Tue, 02 Aug 2022 14:11:46: 27000000 INFO @ Tue, 02 Aug 2022 14:11:46: 19000000 INFO @ Tue, 02 Aug 2022 14:11:47: 28000000 INFO @ Tue, 02 Aug 2022 14:11:52: 28000000 INFO @ Tue, 02 Aug 2022 14:11:54: 29000000 INFO @ Tue, 02 Aug 2022 14:11:54: 20000000 INFO @ Tue, 02 Aug 2022 14:11:59: 29000000 INFO @ Tue, 02 Aug 2022 14:12:01: 21000000 INFO @ Tue, 02 Aug 2022 14:12:02: 30000000 INFO @ Tue, 02 Aug 2022 14:12:05: 30000000 INFO @ Tue, 02 Aug 2022 14:12:09: 22000000 INFO @ Tue, 02 Aug 2022 14:12:09: 31000000 INFO @ Tue, 02 Aug 2022 14:12:12: 31000000 INFO @ Tue, 02 Aug 2022 14:12:17: 32000000 INFO @ Tue, 02 Aug 2022 14:12:17: 23000000 INFO @ Tue, 02 Aug 2022 14:12:19: 32000000 INFO @ Tue, 02 Aug 2022 14:12:24: 33000000 INFO @ Tue, 02 Aug 2022 14:12:24: 24000000 INFO @ Tue, 02 Aug 2022 14:12:25: 33000000 INFO @ Tue, 02 Aug 2022 14:12:32: 34000000 INFO @ Tue, 02 Aug 2022 14:12:32: 34000000 INFO @ Tue, 02 Aug 2022 14:12:33: 25000000 INFO @ Tue, 02 Aug 2022 14:12:38: 35000000 INFO @ Tue, 02 Aug 2022 14:12:41: 26000000 INFO @ Tue, 02 Aug 2022 14:12:41: 35000000 INFO @ Tue, 02 Aug 2022 14:12:45: 36000000 INFO @ Tue, 02 Aug 2022 14:12:49: 27000000 INFO @ Tue, 02 Aug 2022 14:12:49: 36000000 INFO @ Tue, 02 Aug 2022 14:12:51: 37000000 INFO @ Tue, 02 Aug 2022 14:12:58: 38000000 INFO @ Tue, 02 Aug 2022 14:12:58: 28000000 INFO @ Tue, 02 Aug 2022 14:12:58: 37000000 INFO @ Tue, 02 Aug 2022 14:13:04: 39000000 INFO @ Tue, 02 Aug 2022 14:13:06: 38000000 INFO @ Tue, 02 Aug 2022 14:13:06: 29000000 INFO @ Tue, 02 Aug 2022 14:13:10: 40000000 INFO @ Tue, 02 Aug 2022 14:13:14: 39000000 INFO @ Tue, 02 Aug 2022 14:13:14: 30000000 INFO @ Tue, 02 Aug 2022 14:13:17: 41000000 INFO @ Tue, 02 Aug 2022 14:13:22: 40000000 INFO @ Tue, 02 Aug 2022 14:13:23: 31000000 INFO @ Tue, 02 Aug 2022 14:13:23: 42000000 INFO @ Tue, 02 Aug 2022 14:13:29: 43000000 INFO @ Tue, 02 Aug 2022 14:13:30: 41000000 INFO @ Tue, 02 Aug 2022 14:13:31: 32000000 INFO @ Tue, 02 Aug 2022 14:13:36: 44000000 INFO @ Tue, 02 Aug 2022 14:13:39: 42000000 INFO @ Tue, 02 Aug 2022 14:13:39: 33000000 INFO @ Tue, 02 Aug 2022 14:13:42: 45000000 INFO @ Tue, 02 Aug 2022 14:13:47: 43000000 INFO @ Tue, 02 Aug 2022 14:13:47: 34000000 INFO @ Tue, 02 Aug 2022 14:13:49: 46000000 INFO @ Tue, 02 Aug 2022 14:13:56: 44000000 INFO @ Tue, 02 Aug 2022 14:13:56: 47000000 INFO @ Tue, 02 Aug 2022 14:13:56: 35000000 INFO @ Tue, 02 Aug 2022 14:14:02: 48000000 INFO @ Tue, 02 Aug 2022 14:14:04: 45000000 INFO @ Tue, 02 Aug 2022 14:14:04: 36000000 INFO @ Tue, 02 Aug 2022 14:14:08: 49000000 INFO @ Tue, 02 Aug 2022 14:14:13: 46000000 INFO @ Tue, 02 Aug 2022 14:14:13: 37000000 INFO @ Tue, 02 Aug 2022 14:14:14: 50000000 INFO @ Tue, 02 Aug 2022 14:14:21: 51000000 INFO @ Tue, 02 Aug 2022 14:14:21: 47000000 INFO @ Tue, 02 Aug 2022 14:14:21: 38000000 INFO @ Tue, 02 Aug 2022 14:14:27: 52000000 INFO @ Tue, 02 Aug 2022 14:14:29: 48000000 INFO @ Tue, 02 Aug 2022 14:14:30: 39000000 INFO @ Tue, 02 Aug 2022 14:14:33: 53000000 INFO @ Tue, 02 Aug 2022 14:14:38: 49000000 INFO @ Tue, 02 Aug 2022 14:14:38: 40000000 INFO @ Tue, 02 Aug 2022 14:14:40: 54000000 INFO @ Tue, 02 Aug 2022 14:14:46: 50000000 INFO @ Tue, 02 Aug 2022 14:14:46: 55000000 INFO @ Tue, 02 Aug 2022 14:14:47: 41000000 INFO @ Tue, 02 Aug 2022 14:14:53: 56000000 INFO @ Tue, 02 Aug 2022 14:14:54: 51000000 INFO @ Tue, 02 Aug 2022 14:14:55: 42000000 INFO @ Tue, 02 Aug 2022 14:14:59: 57000000 INFO @ Tue, 02 Aug 2022 14:15:03: 52000000 INFO @ Tue, 02 Aug 2022 14:15:04: 43000000 INFO @ Tue, 02 Aug 2022 14:15:06: 58000000 INFO @ Tue, 02 Aug 2022 14:15:12: 53000000 INFO @ Tue, 02 Aug 2022 14:15:12: 59000000 INFO @ Tue, 02 Aug 2022 14:15:13: 44000000 INFO @ Tue, 02 Aug 2022 14:15:19: 60000000 INFO @ Tue, 02 Aug 2022 14:15:21: 54000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 02 Aug 2022 14:15:22: 45000000 INFO @ Tue, 02 Aug 2022 14:15:26: 61000000 INFO @ Tue, 02 Aug 2022 14:15:29: 55000000 INFO @ Tue, 02 Aug 2022 14:15:30: 46000000 INFO @ Tue, 02 Aug 2022 14:15:32: 62000000 INFO @ Tue, 02 Aug 2022 14:15:38: 56000000 INFO @ Tue, 02 Aug 2022 14:15:39: 63000000 INFO @ Tue, 02 Aug 2022 14:15:39: 47000000 INFO @ Tue, 02 Aug 2022 14:15:45: 64000000 INFO @ Tue, 02 Aug 2022 14:15:47: 57000000 INFO @ Tue, 02 Aug 2022 14:15:48: 48000000 INFO @ Tue, 02 Aug 2022 14:15:52: 65000000 INFO @ Tue, 02 Aug 2022 14:15:55: 58000000 INFO @ Tue, 02 Aug 2022 14:15:57: 49000000 INFO @ Tue, 02 Aug 2022 14:15:58: 66000000 INFO @ Tue, 02 Aug 2022 14:16:03: 59000000 INFO @ Tue, 02 Aug 2022 14:16:05: 50000000 INFO @ Tue, 02 Aug 2022 14:16:06: 67000000 INFO @ Tue, 02 Aug 2022 14:16:12: 60000000 INFO @ Tue, 02 Aug 2022 14:16:12: 68000000 INFO @ Tue, 02 Aug 2022 14:16:14: 51000000 INFO @ Tue, 02 Aug 2022 14:16:19: 69000000 INFO @ Tue, 02 Aug 2022 14:16:20: 61000000 INFO @ Tue, 02 Aug 2022 14:16:23: 52000000 INFO @ Tue, 02 Aug 2022 14:16:26: 70000000 INFO @ Tue, 02 Aug 2022 14:16:28: 62000000 INFO @ Tue, 02 Aug 2022 14:16:31: 53000000 INFO @ Tue, 02 Aug 2022 14:16:33: 71000000 INFO @ Tue, 02 Aug 2022 14:16:37: 63000000 INFO @ Tue, 02 Aug 2022 14:16:40: 72000000 INFO @ Tue, 02 Aug 2022 14:16:40: 54000000 INFO @ Tue, 02 Aug 2022 14:16:46: 64000000 INFO @ Tue, 02 Aug 2022 14:16:46: 73000000 INFO @ Tue, 02 Aug 2022 14:16:48: 55000000 INFO @ Tue, 02 Aug 2022 14:16:53: 74000000 INFO @ Tue, 02 Aug 2022 14:16:54: 65000000 INFO @ Tue, 02 Aug 2022 14:16:57: 56000000 INFO @ Tue, 02 Aug 2022 14:17:00: 75000000 INFO @ Tue, 02 Aug 2022 14:17:03: 66000000 INFO @ Tue, 02 Aug 2022 14:17:06: 57000000 INFO @ Tue, 02 Aug 2022 14:17:06: 76000000 BigWig に変換しました。 INFO @ Tue, 02 Aug 2022 14:17:12: 67000000 INFO @ Tue, 02 Aug 2022 14:17:13: 77000000 INFO @ Tue, 02 Aug 2022 14:17:14: 58000000 INFO @ Tue, 02 Aug 2022 14:17:20: 78000000 INFO @ Tue, 02 Aug 2022 14:17:21: 68000000 INFO @ Tue, 02 Aug 2022 14:17:23: 59000000 INFO @ Tue, 02 Aug 2022 14:17:27: 79000000 INFO @ Tue, 02 Aug 2022 14:17:29: 69000000 INFO @ Tue, 02 Aug 2022 14:17:32: 60000000 INFO @ Tue, 02 Aug 2022 14:17:34: 80000000 INFO @ Tue, 02 Aug 2022 14:17:38: 70000000 INFO @ Tue, 02 Aug 2022 14:17:40: 81000000 INFO @ Tue, 02 Aug 2022 14:17:40: 61000000 INFO @ Tue, 02 Aug 2022 14:17:47: 71000000 INFO @ Tue, 02 Aug 2022 14:17:47: 82000000 INFO @ Tue, 02 Aug 2022 14:17:49: 62000000 INFO @ Tue, 02 Aug 2022 14:17:53: 83000000 INFO @ Tue, 02 Aug 2022 14:17:55: 72000000 INFO @ Tue, 02 Aug 2022 14:17:58: 63000000 INFO @ Tue, 02 Aug 2022 14:18:00: 84000000 INFO @ Tue, 02 Aug 2022 14:18:04: 73000000 INFO @ Tue, 02 Aug 2022 14:18:06: 64000000 INFO @ Tue, 02 Aug 2022 14:18:07: 85000000 INFO @ Tue, 02 Aug 2022 14:18:13: 74000000 INFO @ Tue, 02 Aug 2022 14:18:14: 86000000 INFO @ Tue, 02 Aug 2022 14:18:15: 65000000 INFO @ Tue, 02 Aug 2022 14:18:21: 87000000 INFO @ Tue, 02 Aug 2022 14:18:21: 75000000 INFO @ Tue, 02 Aug 2022 14:18:24: 66000000 INFO @ Tue, 02 Aug 2022 14:18:28: 88000000 INFO @ Tue, 02 Aug 2022 14:18:30: 76000000 INFO @ Tue, 02 Aug 2022 14:18:32: 67000000 INFO @ Tue, 02 Aug 2022 14:18:34: 89000000 INFO @ Tue, 02 Aug 2022 14:18:39: 77000000 INFO @ Tue, 02 Aug 2022 14:18:41: 68000000 INFO @ Tue, 02 Aug 2022 14:18:41: 90000000 INFO @ Tue, 02 Aug 2022 14:18:48: 91000000 INFO @ Tue, 02 Aug 2022 14:18:48: 78000000 INFO @ Tue, 02 Aug 2022 14:18:50: 69000000 INFO @ Tue, 02 Aug 2022 14:18:54: 92000000 INFO @ Tue, 02 Aug 2022 14:18:57: 79000000 INFO @ Tue, 02 Aug 2022 14:18:59: 70000000 INFO @ Tue, 02 Aug 2022 14:19:01: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 14:19:01: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 14:19:01: #1 total tags in treatment: 45591557 INFO @ Tue, 02 Aug 2022 14:19:01: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 14:19:01: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 14:19:02: #1 tags after filtering in treatment: 33084281 INFO @ Tue, 02 Aug 2022 14:19:02: #1 Redundant rate of treatment: 0.27 INFO @ Tue, 02 Aug 2022 14:19:02: #1 finished! INFO @ Tue, 02 Aug 2022 14:19:02: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 14:19:02: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 14:19:05: #2 number of paired peaks: 5092 INFO @ Tue, 02 Aug 2022 14:19:05: start model_add_line... INFO @ Tue, 02 Aug 2022 14:19:05: start X-correlation... INFO @ Tue, 02 Aug 2022 14:19:06: end of X-cor INFO @ Tue, 02 Aug 2022 14:19:06: #2 finished! INFO @ Tue, 02 Aug 2022 14:19:06: #2 predicted fragment length is 2 bps INFO @ Tue, 02 Aug 2022 14:19:06: #2 alternative fragment length(s) may be 2,16,44,48,85 bps INFO @ Tue, 02 Aug 2022 14:19:06: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/ERX5847869/ERX5847869.10_model.r WARNING @ Tue, 02 Aug 2022 14:19:06: #2 Since the d (2) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 14:19:06: #2 You may need to consider one of the other alternative d(s): 2,16,44,48,85 WARNING @ Tue, 02 Aug 2022 14:19:06: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 14:19:06: #3 Call peaks... INFO @ Tue, 02 Aug 2022 14:19:06: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 14:19:06: 80000000 INFO @ Tue, 02 Aug 2022 14:19:07: 71000000 INFO @ Tue, 02 Aug 2022 14:19:14: 81000000 INFO @ Tue, 02 Aug 2022 14:19:16: 72000000 INFO @ Tue, 02 Aug 2022 14:19:22: 82000000 INFO @ Tue, 02 Aug 2022 14:19:24: 73000000 INFO @ Tue, 02 Aug 2022 14:19:31: 83000000 INFO @ Tue, 02 Aug 2022 14:19:32: 74000000 INFO @ Tue, 02 Aug 2022 14:19:39: 84000000 INFO @ Tue, 02 Aug 2022 14:19:41: 75000000 INFO @ Tue, 02 Aug 2022 14:19:46: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 14:19:47: 85000000 INFO @ Tue, 02 Aug 2022 14:19:49: 76000000 INFO @ Tue, 02 Aug 2022 14:19:55: 86000000 INFO @ Tue, 02 Aug 2022 14:19:57: 77000000 INFO @ Tue, 02 Aug 2022 14:20:03: 87000000 INFO @ Tue, 02 Aug 2022 14:20:05: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/ERX5847869/ERX5847869.10_peaks.xls INFO @ Tue, 02 Aug 2022 14:20:05: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/ERX5847869/ERX5847869.10_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 14:20:05: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/ERX5847869/ERX5847869.10_summits.bed INFO @ Tue, 02 Aug 2022 14:20:05: Done! pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 14:20:05: 78000000 INFO @ Tue, 02 Aug 2022 14:20:12: 88000000 INFO @ Tue, 02 Aug 2022 14:20:14: 79000000 INFO @ Tue, 02 Aug 2022 14:20:20: 89000000 INFO @ Tue, 02 Aug 2022 14:20:22: 80000000 INFO @ Tue, 02 Aug 2022 14:20:29: 90000000 INFO @ Tue, 02 Aug 2022 14:20:31: 81000000 INFO @ Tue, 02 Aug 2022 14:20:37: 91000000 INFO @ Tue, 02 Aug 2022 14:20:39: 82000000 INFO @ Tue, 02 Aug 2022 14:20:45: 92000000 INFO @ Tue, 02 Aug 2022 14:20:47: 83000000 INFO @ Tue, 02 Aug 2022 14:20:54: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 14:20:54: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 14:20:54: #1 total tags in treatment: 45591557 INFO @ Tue, 02 Aug 2022 14:20:54: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 14:20:54: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 14:20:55: #1 tags after filtering in treatment: 33084281 INFO @ Tue, 02 Aug 2022 14:20:55: #1 Redundant rate of treatment: 0.27 INFO @ Tue, 02 Aug 2022 14:20:55: #1 finished! INFO @ Tue, 02 Aug 2022 14:20:55: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 14:20:55: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 14:20:56: 84000000 INFO @ Tue, 02 Aug 2022 14:20:58: #2 number of paired peaks: 5092 INFO @ Tue, 02 Aug 2022 14:20:58: start model_add_line... INFO @ Tue, 02 Aug 2022 14:20:58: start X-correlation... INFO @ Tue, 02 Aug 2022 14:20:58: end of X-cor INFO @ Tue, 02 Aug 2022 14:20:58: #2 finished! INFO @ Tue, 02 Aug 2022 14:20:58: #2 predicted fragment length is 2 bps INFO @ Tue, 02 Aug 2022 14:20:58: #2 alternative fragment length(s) may be 2,16,44,48,85 bps INFO @ Tue, 02 Aug 2022 14:20:58: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/ERX5847869/ERX5847869.05_model.r WARNING @ Tue, 02 Aug 2022 14:20:58: #2 Since the d (2) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 14:20:58: #2 You may need to consider one of the other alternative d(s): 2,16,44,48,85 WARNING @ Tue, 02 Aug 2022 14:20:58: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 14:20:58: #3 Call peaks... INFO @ Tue, 02 Aug 2022 14:20:58: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 14:21:03: 85000000 INFO @ Tue, 02 Aug 2022 14:21:11: 86000000 INFO @ Tue, 02 Aug 2022 14:21:19: 87000000 INFO @ Tue, 02 Aug 2022 14:21:26: 88000000 INFO @ Tue, 02 Aug 2022 14:21:34: 89000000 INFO @ Tue, 02 Aug 2022 14:21:40: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 14:21:42: 90000000 INFO @ Tue, 02 Aug 2022 14:21:50: 91000000 INFO @ Tue, 02 Aug 2022 14:21:58: 92000000 INFO @ Tue, 02 Aug 2022 14:22:01: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/ERX5847869/ERX5847869.05_peaks.xls INFO @ Tue, 02 Aug 2022 14:22:01: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/ERX5847869/ERX5847869.05_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 14:22:02: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/ERX5847869/ERX5847869.05_summits.bed INFO @ Tue, 02 Aug 2022 14:22:02: Done! pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 14:22:06: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 14:22:06: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 14:22:06: #1 total tags in treatment: 45591557 INFO @ Tue, 02 Aug 2022 14:22:06: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 14:22:06: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 14:22:07: #1 tags after filtering in treatment: 33084281 INFO @ Tue, 02 Aug 2022 14:22:07: #1 Redundant rate of treatment: 0.27 INFO @ Tue, 02 Aug 2022 14:22:07: #1 finished! INFO @ Tue, 02 Aug 2022 14:22:07: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 14:22:07: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 14:22:10: #2 number of paired peaks: 5092 INFO @ Tue, 02 Aug 2022 14:22:10: start model_add_line... INFO @ Tue, 02 Aug 2022 14:22:10: start X-correlation... INFO @ Tue, 02 Aug 2022 14:22:10: end of X-cor INFO @ Tue, 02 Aug 2022 14:22:10: #2 finished! INFO @ Tue, 02 Aug 2022 14:22:10: #2 predicted fragment length is 2 bps INFO @ Tue, 02 Aug 2022 14:22:10: #2 alternative fragment length(s) may be 2,16,44,48,85 bps INFO @ Tue, 02 Aug 2022 14:22:10: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/ERX5847869/ERX5847869.20_model.r WARNING @ Tue, 02 Aug 2022 14:22:10: #2 Since the d (2) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 14:22:10: #2 You may need to consider one of the other alternative d(s): 2,16,44,48,85 WARNING @ Tue, 02 Aug 2022 14:22:10: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 14:22:10: #3 Call peaks... INFO @ Tue, 02 Aug 2022 14:22:10: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 14:22:51: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 14:23:11: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/ERX5847869/ERX5847869.20_peaks.xls INFO @ Tue, 02 Aug 2022 14:23:11: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/ERX5847869/ERX5847869.20_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 14:23:11: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/ERX5847869/ERX5847869.20_summits.bed INFO @ Tue, 02 Aug 2022 14:23:11: Done! pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) CompletedMACS2peakCalling