Job ID = 14168097 SRX = ERX3978822 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 29645087 spots for ERR3975873/ERR3975873.sra Written 29645087 spots for ERR3975873/ERR3975873.sra Read 23505175 spots for ERR3975876/ERR3975876.sra Written 23505175 spots for ERR3975876/ERR3975876.sra fastq に変換しました。 bowtie でマッピング中... Your job 14169553 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 02:47:54 53150262 reads; of these: 53150262 (100.00%) were paired; of these: 13964799 (26.27%) aligned concordantly 0 times 22095731 (41.57%) aligned concordantly exactly 1 time 17089732 (32.15%) aligned concordantly >1 times ---- 13964799 pairs aligned concordantly 0 times; of these: 4617570 (33.07%) aligned discordantly 1 time ---- 9347229 pairs aligned 0 times concordantly or discordantly; of these: 18694458 mates make up the pairs; of these: 9273469 (49.61%) aligned 0 times 860339 (4.60%) aligned exactly 1 time 8560650 (45.79%) aligned >1 times 91.28% overall alignment rate Time searching: 02:47:55 Overall time: 02:47:55 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 64 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 14646606 / 43228619 = 0.3388 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 10 Dec 2021 18:55:54: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/ERX3978822/ERX3978822.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/ERX3978822/ERX3978822.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/ERX3978822/ERX3978822.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/ERX3978822/ERX3978822.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Dec 2021 18:55:54: #1 read tag files... INFO @ Fri, 10 Dec 2021 18:55:54: #1 read treatment tags... INFO @ Fri, 10 Dec 2021 18:56:05: 1000000 INFO @ Fri, 10 Dec 2021 18:56:17: 2000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 10 Dec 2021 18:56:22: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/ERX3978822/ERX3978822.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/ERX3978822/ERX3978822.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/ERX3978822/ERX3978822.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/ERX3978822/ERX3978822.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Dec 2021 18:56:22: #1 read tag files... INFO @ Fri, 10 Dec 2021 18:56:22: #1 read treatment tags... INFO @ Fri, 10 Dec 2021 18:56:30: 3000000 INFO @ Fri, 10 Dec 2021 18:56:37: 1000000 INFO @ Fri, 10 Dec 2021 18:56:42: 4000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 10 Dec 2021 18:56:52: 2000000 INFO @ Fri, 10 Dec 2021 18:56:53: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/ERX3978822/ERX3978822.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/ERX3978822/ERX3978822.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/ERX3978822/ERX3978822.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/ERX3978822/ERX3978822.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Dec 2021 18:56:53: #1 read tag files... INFO @ Fri, 10 Dec 2021 18:56:53: #1 read treatment tags... INFO @ Fri, 10 Dec 2021 18:56:55: 5000000 INFO @ Fri, 10 Dec 2021 18:57:06: 1000000 INFO @ Fri, 10 Dec 2021 18:57:07: 3000000 INFO @ Fri, 10 Dec 2021 18:57:07: 6000000 INFO @ Fri, 10 Dec 2021 18:57:18: 2000000 INFO @ Fri, 10 Dec 2021 18:57:21: 7000000 INFO @ Fri, 10 Dec 2021 18:57:23: 4000000 INFO @ Fri, 10 Dec 2021 18:57:33: 3000000 INFO @ Fri, 10 Dec 2021 18:57:35: 8000000 INFO @ Fri, 10 Dec 2021 18:57:37: 5000000 INFO @ Fri, 10 Dec 2021 18:57:46: 4000000 INFO @ Fri, 10 Dec 2021 18:57:48: 9000000 INFO @ Fri, 10 Dec 2021 18:57:53: 6000000 INFO @ Fri, 10 Dec 2021 18:57:59: 5000000 INFO @ Fri, 10 Dec 2021 18:58:01: 10000000 INFO @ Fri, 10 Dec 2021 18:58:08: 7000000 INFO @ Fri, 10 Dec 2021 18:58:12: 6000000 INFO @ Fri, 10 Dec 2021 18:58:14: 11000000 INFO @ Fri, 10 Dec 2021 18:58:24: 8000000 INFO @ Fri, 10 Dec 2021 18:58:25: 7000000 INFO @ Fri, 10 Dec 2021 18:58:27: 12000000 INFO @ Fri, 10 Dec 2021 18:58:38: 8000000 INFO @ Fri, 10 Dec 2021 18:58:39: 9000000 INFO @ Fri, 10 Dec 2021 18:58:41: 13000000 INFO @ Fri, 10 Dec 2021 18:58:52: 9000000 INFO @ Fri, 10 Dec 2021 18:58:54: 10000000 INFO @ Fri, 10 Dec 2021 18:58:55: 14000000 INFO @ Fri, 10 Dec 2021 18:59:06: 10000000 INFO @ Fri, 10 Dec 2021 18:59:09: 15000000 INFO @ Fri, 10 Dec 2021 18:59:09: 11000000 INFO @ Fri, 10 Dec 2021 18:59:20: 11000000 INFO @ Fri, 10 Dec 2021 18:59:22: 16000000 INFO @ Fri, 10 Dec 2021 18:59:25: 12000000 INFO @ Fri, 10 Dec 2021 18:59:33: 12000000 INFO @ Fri, 10 Dec 2021 18:59:35: 17000000 INFO @ Fri, 10 Dec 2021 18:59:40: 13000000 INFO @ Fri, 10 Dec 2021 18:59:47: 13000000 INFO @ Fri, 10 Dec 2021 18:59:48: 18000000 INFO @ Fri, 10 Dec 2021 18:59:56: 14000000 INFO @ Fri, 10 Dec 2021 19:00:00: 14000000 INFO @ Fri, 10 Dec 2021 19:00:02: 19000000 INFO @ Fri, 10 Dec 2021 19:00:11: 15000000 INFO @ Fri, 10 Dec 2021 19:00:14: 15000000 INFO @ Fri, 10 Dec 2021 19:00:15: 20000000 INFO @ Fri, 10 Dec 2021 19:00:26: 16000000 INFO @ Fri, 10 Dec 2021 19:00:27: 16000000 INFO @ Fri, 10 Dec 2021 19:00:28: 21000000 INFO @ Fri, 10 Dec 2021 19:00:40: 17000000 INFO @ Fri, 10 Dec 2021 19:00:41: 22000000 INFO @ Fri, 10 Dec 2021 19:00:42: 17000000 INFO @ Fri, 10 Dec 2021 19:00:52: 18000000 INFO @ Fri, 10 Dec 2021 19:00:55: 23000000 INFO @ Fri, 10 Dec 2021 19:00:57: 18000000 INFO @ Fri, 10 Dec 2021 19:01:05: 19000000 INFO @ Fri, 10 Dec 2021 19:01:07: 24000000 INFO @ Fri, 10 Dec 2021 19:01:13: 19000000 INFO @ Fri, 10 Dec 2021 19:01:18: 20000000 INFO @ Fri, 10 Dec 2021 19:01:20: 25000000 INFO @ Fri, 10 Dec 2021 19:01:28: 20000000 INFO @ Fri, 10 Dec 2021 19:01:32: 21000000 INFO @ Fri, 10 Dec 2021 19:01:34: 26000000 INFO @ Fri, 10 Dec 2021 19:01:44: 21000000 INFO @ Fri, 10 Dec 2021 19:01:46: 22000000 INFO @ Fri, 10 Dec 2021 19:01:47: 27000000 INFO @ Fri, 10 Dec 2021 19:01:59: 23000000 INFO @ Fri, 10 Dec 2021 19:01:59: 22000000 INFO @ Fri, 10 Dec 2021 19:02:00: 28000000 INFO @ Fri, 10 Dec 2021 19:02:12: 24000000 INFO @ Fri, 10 Dec 2021 19:02:13: 29000000 INFO @ Fri, 10 Dec 2021 19:02:15: 23000000 INFO @ Fri, 10 Dec 2021 19:02:25: 25000000 INFO @ Fri, 10 Dec 2021 19:02:26: 30000000 INFO @ Fri, 10 Dec 2021 19:02:31: 24000000 INFO @ Fri, 10 Dec 2021 19:02:38: 26000000 INFO @ Fri, 10 Dec 2021 19:02:38: 31000000 INFO @ Fri, 10 Dec 2021 19:02:47: 25000000 INFO @ Fri, 10 Dec 2021 19:02:51: 32000000 INFO @ Fri, 10 Dec 2021 19:02:51: 27000000 INFO @ Fri, 10 Dec 2021 19:03:03: 26000000 INFO @ Fri, 10 Dec 2021 19:03:04: 33000000 INFO @ Fri, 10 Dec 2021 19:03:04: 28000000 INFO @ Fri, 10 Dec 2021 19:03:16: 34000000 INFO @ Fri, 10 Dec 2021 19:03:17: 29000000 INFO @ Fri, 10 Dec 2021 19:03:18: 27000000 INFO @ Fri, 10 Dec 2021 19:03:29: 35000000 INFO @ Fri, 10 Dec 2021 19:03:30: 30000000 INFO @ Fri, 10 Dec 2021 19:03:34: 28000000 INFO @ Fri, 10 Dec 2021 19:03:42: 36000000 INFO @ Fri, 10 Dec 2021 19:03:43: 31000000 INFO @ Fri, 10 Dec 2021 19:03:49: 29000000 INFO @ Fri, 10 Dec 2021 19:03:55: 37000000 INFO @ Fri, 10 Dec 2021 19:03:56: 32000000 INFO @ Fri, 10 Dec 2021 19:04:05: 30000000 INFO @ Fri, 10 Dec 2021 19:04:09: 38000000 INFO @ Fri, 10 Dec 2021 19:04:10: 33000000 INFO @ Fri, 10 Dec 2021 19:04:20: 31000000 INFO @ Fri, 10 Dec 2021 19:04:22: 39000000 INFO @ Fri, 10 Dec 2021 19:04:23: 34000000 INFO @ Fri, 10 Dec 2021 19:04:35: 32000000 INFO @ Fri, 10 Dec 2021 19:04:35: 35000000 INFO @ Fri, 10 Dec 2021 19:04:35: 40000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Fri, 10 Dec 2021 19:04:48: 36000000 INFO @ Fri, 10 Dec 2021 19:04:49: 41000000 INFO @ Fri, 10 Dec 2021 19:04:49: 33000000 INFO @ Fri, 10 Dec 2021 19:05:01: 37000000 INFO @ Fri, 10 Dec 2021 19:05:02: 42000000 INFO @ Fri, 10 Dec 2021 19:05:05: 34000000 INFO @ Fri, 10 Dec 2021 19:05:14: 38000000 INFO @ Fri, 10 Dec 2021 19:05:15: 43000000 INFO @ Fri, 10 Dec 2021 19:05:20: 35000000 INFO @ Fri, 10 Dec 2021 19:05:28: 39000000 INFO @ Fri, 10 Dec 2021 19:05:28: 44000000 INFO @ Fri, 10 Dec 2021 19:05:36: 36000000 INFO @ Fri, 10 Dec 2021 19:05:41: 45000000 INFO @ Fri, 10 Dec 2021 19:05:41: 40000000 INFO @ Fri, 10 Dec 2021 19:05:51: 37000000 INFO @ Fri, 10 Dec 2021 19:05:54: 46000000 INFO @ Fri, 10 Dec 2021 19:05:55: 41000000 INFO @ Fri, 10 Dec 2021 19:06:06: 47000000 INFO @ Fri, 10 Dec 2021 19:06:06: 38000000 INFO @ Fri, 10 Dec 2021 19:06:08: 42000000 INFO @ Fri, 10 Dec 2021 19:06:19: 48000000 INFO @ Fri, 10 Dec 2021 19:06:21: 43000000 INFO @ Fri, 10 Dec 2021 19:06:22: 39000000 BigWig に変換しました。 INFO @ Fri, 10 Dec 2021 19:06:32: 49000000 INFO @ Fri, 10 Dec 2021 19:06:34: 44000000 INFO @ Fri, 10 Dec 2021 19:06:38: 40000000 INFO @ Fri, 10 Dec 2021 19:06:45: 50000000 INFO @ Fri, 10 Dec 2021 19:06:47: 45000000 INFO @ Fri, 10 Dec 2021 19:06:54: 41000000 INFO @ Fri, 10 Dec 2021 19:06:59: 51000000 INFO @ Fri, 10 Dec 2021 19:07:01: 46000000 INFO @ Fri, 10 Dec 2021 19:07:09: 42000000 INFO @ Fri, 10 Dec 2021 19:07:12: 52000000 INFO @ Fri, 10 Dec 2021 19:07:14: 47000000 INFO @ Fri, 10 Dec 2021 19:07:25: 43000000 INFO @ Fri, 10 Dec 2021 19:07:26: 53000000 INFO @ Fri, 10 Dec 2021 19:07:27: 48000000 INFO @ Fri, 10 Dec 2021 19:07:38: 54000000 INFO @ Fri, 10 Dec 2021 19:07:39: 49000000 INFO @ Fri, 10 Dec 2021 19:07:40: 44000000 INFO @ Fri, 10 Dec 2021 19:07:51: 50000000 INFO @ Fri, 10 Dec 2021 19:07:52: 55000000 INFO @ Fri, 10 Dec 2021 19:07:56: 45000000 INFO @ Fri, 10 Dec 2021 19:08:03: 51000000 INFO @ Fri, 10 Dec 2021 19:08:05: 56000000 INFO @ Fri, 10 Dec 2021 19:08:11: 46000000 INFO @ Fri, 10 Dec 2021 19:08:16: 52000000 INFO @ Fri, 10 Dec 2021 19:08:18: 57000000 INFO @ Fri, 10 Dec 2021 19:08:26: 47000000 INFO @ Fri, 10 Dec 2021 19:08:28: 53000000 INFO @ Fri, 10 Dec 2021 19:08:32: 58000000 INFO @ Fri, 10 Dec 2021 19:08:41: 48000000 INFO @ Fri, 10 Dec 2021 19:08:41: 54000000 INFO @ Fri, 10 Dec 2021 19:08:46: 59000000 INFO @ Fri, 10 Dec 2021 19:08:55: 55000000 INFO @ Fri, 10 Dec 2021 19:08:56: 49000000 INFO @ Fri, 10 Dec 2021 19:09:00: 60000000 INFO @ Fri, 10 Dec 2021 19:09:09: 56000000 INFO @ Fri, 10 Dec 2021 19:09:11: 50000000 INFO @ Fri, 10 Dec 2021 19:09:14: 61000000 INFO @ Fri, 10 Dec 2021 19:09:23: 57000000 INFO @ Fri, 10 Dec 2021 19:09:25: 51000000 INFO @ Fri, 10 Dec 2021 19:09:28: 62000000 INFO @ Fri, 10 Dec 2021 19:09:37: 58000000 INFO @ Fri, 10 Dec 2021 19:09:41: 52000000 INFO @ Fri, 10 Dec 2021 19:09:42: 63000000 INFO @ Fri, 10 Dec 2021 19:09:50: 59000000 INFO @ Fri, 10 Dec 2021 19:09:55: 64000000 INFO @ Fri, 10 Dec 2021 19:09:56: 53000000 INFO @ Fri, 10 Dec 2021 19:10:04: 60000000 INFO @ Fri, 10 Dec 2021 19:10:08: 65000000 INFO @ Fri, 10 Dec 2021 19:10:11: 54000000 INFO @ Fri, 10 Dec 2021 19:10:18: 61000000 INFO @ Fri, 10 Dec 2021 19:10:22: 66000000 INFO @ Fri, 10 Dec 2021 19:10:27: 55000000 INFO @ Fri, 10 Dec 2021 19:10:31: 62000000 INFO @ Fri, 10 Dec 2021 19:10:35: 67000000 INFO @ Fri, 10 Dec 2021 19:10:43: 56000000 INFO @ Fri, 10 Dec 2021 19:10:44: 63000000 INFO @ Fri, 10 Dec 2021 19:10:44: #1 tag size is determined as 119 bps INFO @ Fri, 10 Dec 2021 19:10:44: #1 tag size = 119 INFO @ Fri, 10 Dec 2021 19:10:44: #1 total tags in treatment: 25052338 INFO @ Fri, 10 Dec 2021 19:10:44: #1 user defined the maximum tags... INFO @ Fri, 10 Dec 2021 19:10:44: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Dec 2021 19:10:45: #1 tags after filtering in treatment: 17872341 INFO @ Fri, 10 Dec 2021 19:10:45: #1 Redundant rate of treatment: 0.29 INFO @ Fri, 10 Dec 2021 19:10:45: #1 finished! INFO @ Fri, 10 Dec 2021 19:10:45: #2 Build Peak Model... INFO @ Fri, 10 Dec 2021 19:10:45: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Dec 2021 19:10:47: #2 number of paired peaks: 1800 INFO @ Fri, 10 Dec 2021 19:10:47: start model_add_line... INFO @ Fri, 10 Dec 2021 19:10:47: start X-correlation... INFO @ Fri, 10 Dec 2021 19:10:47: end of X-cor INFO @ Fri, 10 Dec 2021 19:10:47: #2 finished! INFO @ Fri, 10 Dec 2021 19:10:47: #2 predicted fragment length is 123 bps INFO @ Fri, 10 Dec 2021 19:10:47: #2 alternative fragment length(s) may be 123 bps INFO @ Fri, 10 Dec 2021 19:10:47: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/ERX3978822/ERX3978822.05_model.r WARNING @ Fri, 10 Dec 2021 19:10:47: #2 Since the d (123) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 10 Dec 2021 19:10:47: #2 You may need to consider one of the other alternative d(s): 123 WARNING @ Fri, 10 Dec 2021 19:10:47: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 10 Dec 2021 19:10:47: #3 Call peaks... INFO @ Fri, 10 Dec 2021 19:10:47: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 10 Dec 2021 19:10:56: 64000000 INFO @ Fri, 10 Dec 2021 19:10:58: 57000000 INFO @ Fri, 10 Dec 2021 19:11:08: 65000000 INFO @ Fri, 10 Dec 2021 19:11:13: 58000000 INFO @ Fri, 10 Dec 2021 19:11:20: 66000000 INFO @ Fri, 10 Dec 2021 19:11:28: 59000000 INFO @ Fri, 10 Dec 2021 19:11:31: 67000000 INFO @ Fri, 10 Dec 2021 19:11:40: #3 Call peaks for each chromosome... INFO @ Fri, 10 Dec 2021 19:11:40: #1 tag size is determined as 119 bps INFO @ Fri, 10 Dec 2021 19:11:40: #1 tag size = 119 INFO @ Fri, 10 Dec 2021 19:11:40: #1 total tags in treatment: 25052338 INFO @ Fri, 10 Dec 2021 19:11:40: #1 user defined the maximum tags... INFO @ Fri, 10 Dec 2021 19:11:40: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Dec 2021 19:11:41: #1 tags after filtering in treatment: 17872341 INFO @ Fri, 10 Dec 2021 19:11:41: #1 Redundant rate of treatment: 0.29 INFO @ Fri, 10 Dec 2021 19:11:41: #1 finished! INFO @ Fri, 10 Dec 2021 19:11:41: #2 Build Peak Model... INFO @ Fri, 10 Dec 2021 19:11:41: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Dec 2021 19:11:43: #2 number of paired peaks: 1800 INFO @ Fri, 10 Dec 2021 19:11:43: start model_add_line... INFO @ Fri, 10 Dec 2021 19:11:43: start X-correlation... INFO @ Fri, 10 Dec 2021 19:11:43: end of X-cor INFO @ Fri, 10 Dec 2021 19:11:43: #2 finished! INFO @ Fri, 10 Dec 2021 19:11:43: #2 predicted fragment length is 123 bps INFO @ Fri, 10 Dec 2021 19:11:43: #2 alternative fragment length(s) may be 123 bps INFO @ Fri, 10 Dec 2021 19:11:43: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/ERX3978822/ERX3978822.20_model.r WARNING @ Fri, 10 Dec 2021 19:11:43: #2 Since the d (123) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 10 Dec 2021 19:11:43: #2 You may need to consider one of the other alternative d(s): 123 WARNING @ Fri, 10 Dec 2021 19:11:43: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 10 Dec 2021 19:11:43: #3 Call peaks... INFO @ Fri, 10 Dec 2021 19:11:43: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 10 Dec 2021 19:11:44: 60000000 INFO @ Fri, 10 Dec 2021 19:11:58: 61000000 INFO @ Fri, 10 Dec 2021 19:12:07: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/ERX3978822/ERX3978822.05_peaks.xls INFO @ Fri, 10 Dec 2021 19:12:07: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/ERX3978822/ERX3978822.05_peaks.narrowPeak INFO @ Fri, 10 Dec 2021 19:12:07: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/ERX3978822/ERX3978822.05_summits.bed INFO @ Fri, 10 Dec 2021 19:12:07: Done! pass1 - making usageList (15 chroms): 5 millis pass2 - checking and writing primary data (14965 records, 4 fields): 22 millis CompletedMACS2peakCalling INFO @ Fri, 10 Dec 2021 19:12:12: 62000000 INFO @ Fri, 10 Dec 2021 19:12:26: 63000000 INFO @ Fri, 10 Dec 2021 19:12:36: #3 Call peaks for each chromosome... INFO @ Fri, 10 Dec 2021 19:12:39: 64000000 INFO @ Fri, 10 Dec 2021 19:12:54: 65000000 INFO @ Fri, 10 Dec 2021 19:13:02: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/ERX3978822/ERX3978822.20_peaks.xls INFO @ Fri, 10 Dec 2021 19:13:02: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/ERX3978822/ERX3978822.20_peaks.narrowPeak INFO @ Fri, 10 Dec 2021 19:13:02: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/ERX3978822/ERX3978822.20_summits.bed INFO @ Fri, 10 Dec 2021 19:13:02: Done! pass1 - making usageList (14 chroms): 2 millis pass2 - checking and writing primary data (6177 records, 4 fields): 16 millis CompletedMACS2peakCalling INFO @ Fri, 10 Dec 2021 19:13:07: 66000000 INFO @ Fri, 10 Dec 2021 19:13:21: 67000000 INFO @ Fri, 10 Dec 2021 19:13:30: #1 tag size is determined as 119 bps INFO @ Fri, 10 Dec 2021 19:13:30: #1 tag size = 119 INFO @ Fri, 10 Dec 2021 19:13:30: #1 total tags in treatment: 25052338 INFO @ Fri, 10 Dec 2021 19:13:30: #1 user defined the maximum tags... INFO @ Fri, 10 Dec 2021 19:13:30: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Dec 2021 19:13:31: #1 tags after filtering in treatment: 17872341 INFO @ Fri, 10 Dec 2021 19:13:31: #1 Redundant rate of treatment: 0.29 INFO @ Fri, 10 Dec 2021 19:13:31: #1 finished! INFO @ Fri, 10 Dec 2021 19:13:31: #2 Build Peak Model... INFO @ Fri, 10 Dec 2021 19:13:31: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Dec 2021 19:13:33: #2 number of paired peaks: 1800 INFO @ Fri, 10 Dec 2021 19:13:33: start model_add_line... INFO @ Fri, 10 Dec 2021 19:13:33: start X-correlation... INFO @ Fri, 10 Dec 2021 19:13:33: end of X-cor INFO @ Fri, 10 Dec 2021 19:13:33: #2 finished! INFO @ Fri, 10 Dec 2021 19:13:33: #2 predicted fragment length is 123 bps INFO @ Fri, 10 Dec 2021 19:13:33: #2 alternative fragment length(s) may be 123 bps INFO @ Fri, 10 Dec 2021 19:13:33: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/ERX3978822/ERX3978822.10_model.r WARNING @ Fri, 10 Dec 2021 19:13:33: #2 Since the d (123) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 10 Dec 2021 19:13:33: #2 You may need to consider one of the other alternative d(s): 123 WARNING @ Fri, 10 Dec 2021 19:13:33: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 10 Dec 2021 19:13:33: #3 Call peaks... INFO @ Fri, 10 Dec 2021 19:13:33: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 10 Dec 2021 19:14:24: #3 Call peaks for each chromosome... INFO @ Fri, 10 Dec 2021 19:14:50: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/ERX3978822/ERX3978822.10_peaks.xls INFO @ Fri, 10 Dec 2021 19:14:50: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/ERX3978822/ERX3978822.10_peaks.narrowPeak INFO @ Fri, 10 Dec 2021 19:14:50: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/ERX3978822/ERX3978822.10_summits.bed INFO @ Fri, 10 Dec 2021 19:14:50: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (11019 records, 4 fields): 16 millis CompletedMACS2peakCalling