Job ID = 14167964 SRX = ERX3978809 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 26023612 spots for ERR3975849/ERR3975849.sra Written 26023612 spots for ERR3975849/ERR3975849.sra Read 32751712 spots for ERR3975851/ERR3975851.sra Written 32751712 spots for ERR3975851/ERR3975851.sra fastq に変換しました。 bowtie でマッピング中... Your job 14169320 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 03:17:05 58775324 reads; of these: 58775324 (100.00%) were paired; of these: 13608099 (23.15%) aligned concordantly 0 times 30244550 (51.46%) aligned concordantly exactly 1 time 14922675 (25.39%) aligned concordantly >1 times ---- 13608099 pairs aligned concordantly 0 times; of these: 5275172 (38.76%) aligned discordantly 1 time ---- 8332927 pairs aligned 0 times concordantly or discordantly; of these: 16665854 mates make up the pairs; of these: 11115641 (66.70%) aligned 0 times 922404 (5.53%) aligned exactly 1 time 4627809 (27.77%) aligned >1 times 90.54% overall alignment rate Time searching: 03:17:06 Overall time: 03:17:06 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 64 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 13963887 / 49912364 = 0.2798 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 10 Dec 2021 18:00:49: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/ERX3978809/ERX3978809.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/ERX3978809/ERX3978809.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/ERX3978809/ERX3978809.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/ERX3978809/ERX3978809.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Dec 2021 18:00:49: #1 read tag files... INFO @ Fri, 10 Dec 2021 18:00:49: #1 read treatment tags... INFO @ Fri, 10 Dec 2021 18:00:56: 1000000 INFO @ Fri, 10 Dec 2021 18:01:02: 2000000 INFO @ Fri, 10 Dec 2021 18:01:09: 3000000 INFO @ Fri, 10 Dec 2021 18:01:15: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 10 Dec 2021 18:01:18: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/ERX3978809/ERX3978809.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/ERX3978809/ERX3978809.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/ERX3978809/ERX3978809.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/ERX3978809/ERX3978809.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Dec 2021 18:01:18: #1 read tag files... INFO @ Fri, 10 Dec 2021 18:01:18: #1 read treatment tags... INFO @ Fri, 10 Dec 2021 18:01:22: 5000000 INFO @ Fri, 10 Dec 2021 18:01:25: 1000000 INFO @ Fri, 10 Dec 2021 18:01:28: 6000000 INFO @ Fri, 10 Dec 2021 18:01:31: 2000000 INFO @ Fri, 10 Dec 2021 18:01:35: 7000000 INFO @ Fri, 10 Dec 2021 18:01:37: 3000000 INFO @ Fri, 10 Dec 2021 18:01:41: 8000000 INFO @ Fri, 10 Dec 2021 18:01:44: 4000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 10 Dec 2021 18:01:48: 9000000 INFO @ Fri, 10 Dec 2021 18:01:48: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/ERX3978809/ERX3978809.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/ERX3978809/ERX3978809.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/ERX3978809/ERX3978809.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/ERX3978809/ERX3978809.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Dec 2021 18:01:48: #1 read tag files... INFO @ Fri, 10 Dec 2021 18:01:48: #1 read treatment tags... INFO @ Fri, 10 Dec 2021 18:01:50: 5000000 INFO @ Fri, 10 Dec 2021 18:01:55: 10000000 INFO @ Fri, 10 Dec 2021 18:01:57: 1000000 INFO @ Fri, 10 Dec 2021 18:01:57: 6000000 INFO @ Fri, 10 Dec 2021 18:02:02: 11000000 INFO @ Fri, 10 Dec 2021 18:02:04: 7000000 INFO @ Fri, 10 Dec 2021 18:02:05: 2000000 INFO @ Fri, 10 Dec 2021 18:02:10: 12000000 INFO @ Fri, 10 Dec 2021 18:02:10: 8000000 INFO @ Fri, 10 Dec 2021 18:02:12: 3000000 INFO @ Fri, 10 Dec 2021 18:02:17: 9000000 INFO @ Fri, 10 Dec 2021 18:02:17: 13000000 INFO @ Fri, 10 Dec 2021 18:02:20: 4000000 INFO @ Fri, 10 Dec 2021 18:02:23: 10000000 INFO @ Fri, 10 Dec 2021 18:02:25: 14000000 INFO @ Fri, 10 Dec 2021 18:02:28: 5000000 INFO @ Fri, 10 Dec 2021 18:02:29: 11000000 INFO @ Fri, 10 Dec 2021 18:02:32: 15000000 INFO @ Fri, 10 Dec 2021 18:02:36: 12000000 INFO @ Fri, 10 Dec 2021 18:02:36: 6000000 INFO @ Fri, 10 Dec 2021 18:02:40: 16000000 INFO @ Fri, 10 Dec 2021 18:02:42: 13000000 INFO @ Fri, 10 Dec 2021 18:02:44: 7000000 INFO @ Fri, 10 Dec 2021 18:02:48: 17000000 INFO @ Fri, 10 Dec 2021 18:02:48: 14000000 INFO @ Fri, 10 Dec 2021 18:02:51: 8000000 INFO @ Fri, 10 Dec 2021 18:02:55: 15000000 INFO @ Fri, 10 Dec 2021 18:02:56: 18000000 INFO @ Fri, 10 Dec 2021 18:02:59: 9000000 INFO @ Fri, 10 Dec 2021 18:03:01: 16000000 INFO @ Fri, 10 Dec 2021 18:03:03: 19000000 INFO @ Fri, 10 Dec 2021 18:03:07: 10000000 INFO @ Fri, 10 Dec 2021 18:03:07: 17000000 INFO @ Fri, 10 Dec 2021 18:03:11: 20000000 INFO @ Fri, 10 Dec 2021 18:03:14: 18000000 INFO @ Fri, 10 Dec 2021 18:03:14: 11000000 INFO @ Fri, 10 Dec 2021 18:03:19: 21000000 INFO @ Fri, 10 Dec 2021 18:03:20: 19000000 INFO @ Fri, 10 Dec 2021 18:03:22: 12000000 INFO @ Fri, 10 Dec 2021 18:03:27: 20000000 INFO @ Fri, 10 Dec 2021 18:03:27: 22000000 INFO @ Fri, 10 Dec 2021 18:03:29: 13000000 INFO @ Fri, 10 Dec 2021 18:03:33: 21000000 INFO @ Fri, 10 Dec 2021 18:03:34: 23000000 INFO @ Fri, 10 Dec 2021 18:03:37: 14000000 INFO @ Fri, 10 Dec 2021 18:03:40: 22000000 INFO @ Fri, 10 Dec 2021 18:03:42: 24000000 INFO @ Fri, 10 Dec 2021 18:03:44: 15000000 INFO @ Fri, 10 Dec 2021 18:03:46: 23000000 INFO @ Fri, 10 Dec 2021 18:03:49: 25000000 INFO @ Fri, 10 Dec 2021 18:03:52: 16000000 INFO @ Fri, 10 Dec 2021 18:03:52: 24000000 INFO @ Fri, 10 Dec 2021 18:03:57: 26000000 INFO @ Fri, 10 Dec 2021 18:03:59: 25000000 INFO @ Fri, 10 Dec 2021 18:03:59: 17000000 INFO @ Fri, 10 Dec 2021 18:04:05: 27000000 INFO @ Fri, 10 Dec 2021 18:04:05: 26000000 INFO @ Fri, 10 Dec 2021 18:04:07: 18000000 INFO @ Fri, 10 Dec 2021 18:04:12: 27000000 INFO @ Fri, 10 Dec 2021 18:04:12: 28000000 INFO @ Fri, 10 Dec 2021 18:04:15: 19000000 INFO @ Fri, 10 Dec 2021 18:04:19: 28000000 INFO @ Fri, 10 Dec 2021 18:04:19: 29000000 INFO @ Fri, 10 Dec 2021 18:04:24: 20000000 INFO @ Fri, 10 Dec 2021 18:04:26: 29000000 INFO @ Fri, 10 Dec 2021 18:04:26: 30000000 INFO @ Fri, 10 Dec 2021 18:04:31: 21000000 INFO @ Fri, 10 Dec 2021 18:04:33: 31000000 INFO @ Fri, 10 Dec 2021 18:04:33: 30000000 INFO @ Fri, 10 Dec 2021 18:04:38: 22000000 INFO @ Fri, 10 Dec 2021 18:04:39: 32000000 INFO @ Fri, 10 Dec 2021 18:04:41: 31000000 INFO @ Fri, 10 Dec 2021 18:04:46: 33000000 INFO @ Fri, 10 Dec 2021 18:04:46: 23000000 INFO @ Fri, 10 Dec 2021 18:04:48: 32000000 INFO @ Fri, 10 Dec 2021 18:04:52: 34000000 INFO @ Fri, 10 Dec 2021 18:04:53: 24000000 INFO @ Fri, 10 Dec 2021 18:04:55: 33000000 INFO @ Fri, 10 Dec 2021 18:04:58: 35000000 INFO @ Fri, 10 Dec 2021 18:05:00: 25000000 INFO @ Fri, 10 Dec 2021 18:05:02: 34000000 INFO @ Fri, 10 Dec 2021 18:05:05: 36000000 INFO @ Fri, 10 Dec 2021 18:05:07: 26000000 INFO @ Fri, 10 Dec 2021 18:05:10: 35000000 INFO @ Fri, 10 Dec 2021 18:05:11: 37000000 INFO @ Fri, 10 Dec 2021 18:05:15: 27000000 INFO @ Fri, 10 Dec 2021 18:05:17: 36000000 INFO @ Fri, 10 Dec 2021 18:05:18: 38000000 INFO @ Fri, 10 Dec 2021 18:05:22: 28000000 INFO @ Fri, 10 Dec 2021 18:05:24: 37000000 INFO @ Fri, 10 Dec 2021 18:05:25: 39000000 INFO @ Fri, 10 Dec 2021 18:05:29: 29000000 INFO @ Fri, 10 Dec 2021 18:05:31: 38000000 INFO @ Fri, 10 Dec 2021 18:05:31: 40000000 INFO @ Fri, 10 Dec 2021 18:05:37: 30000000 INFO @ Fri, 10 Dec 2021 18:05:38: 41000000 INFO @ Fri, 10 Dec 2021 18:05:38: 39000000 INFO @ Fri, 10 Dec 2021 18:05:44: 31000000 INFO @ Fri, 10 Dec 2021 18:05:44: 42000000 INFO @ Fri, 10 Dec 2021 18:05:46: 40000000 INFO @ Fri, 10 Dec 2021 18:05:51: 43000000 INFO @ Fri, 10 Dec 2021 18:05:51: 32000000 INFO @ Fri, 10 Dec 2021 18:05:53: 41000000 INFO @ Fri, 10 Dec 2021 18:05:57: 44000000 INFO @ Fri, 10 Dec 2021 18:05:59: 33000000 INFO @ Fri, 10 Dec 2021 18:06:00: 42000000 INFO @ Fri, 10 Dec 2021 18:06:04: 45000000 INFO @ Fri, 10 Dec 2021 18:06:06: 34000000 INFO @ Fri, 10 Dec 2021 18:06:08: 43000000 INFO @ Fri, 10 Dec 2021 18:06:11: 46000000 INFO @ Fri, 10 Dec 2021 18:06:13: 35000000 INFO @ Fri, 10 Dec 2021 18:06:15: 44000000 INFO @ Fri, 10 Dec 2021 18:06:17: 47000000 INFO @ Fri, 10 Dec 2021 18:06:20: 36000000 INFO @ Fri, 10 Dec 2021 18:06:22: 45000000 INFO @ Fri, 10 Dec 2021 18:06:24: 48000000 INFO @ Fri, 10 Dec 2021 18:06:27: 37000000 INFO @ Fri, 10 Dec 2021 18:06:29: 46000000 INFO @ Fri, 10 Dec 2021 18:06:30: 49000000 INFO @ Fri, 10 Dec 2021 18:06:35: 38000000 INFO @ Fri, 10 Dec 2021 18:06:37: 47000000 INFO @ Fri, 10 Dec 2021 18:06:37: 50000000 INFO @ Fri, 10 Dec 2021 18:06:42: 39000000 INFO @ Fri, 10 Dec 2021 18:06:44: 48000000 INFO @ Fri, 10 Dec 2021 18:06:44: 51000000 INFO @ Fri, 10 Dec 2021 18:06:49: 40000000 INFO @ Fri, 10 Dec 2021 18:06:51: 52000000 INFO @ Fri, 10 Dec 2021 18:06:51: 49000000 INFO @ Fri, 10 Dec 2021 18:06:56: 41000000 INFO @ Fri, 10 Dec 2021 18:06:57: 53000000 INFO @ Fri, 10 Dec 2021 18:06:58: 50000000 INFO @ Fri, 10 Dec 2021 18:07:03: 54000000 INFO @ Fri, 10 Dec 2021 18:07:03: 42000000 INFO @ Fri, 10 Dec 2021 18:07:06: 51000000 INFO @ Fri, 10 Dec 2021 18:07:10: 55000000 INFO @ Fri, 10 Dec 2021 18:07:10: 43000000 INFO @ Fri, 10 Dec 2021 18:07:13: 52000000 INFO @ Fri, 10 Dec 2021 18:07:16: 56000000 INFO @ Fri, 10 Dec 2021 18:07:18: 44000000 INFO @ Fri, 10 Dec 2021 18:07:20: 53000000 INFO @ Fri, 10 Dec 2021 18:07:22: 57000000 INFO @ Fri, 10 Dec 2021 18:07:25: 45000000 INFO @ Fri, 10 Dec 2021 18:07:27: 54000000 INFO @ Fri, 10 Dec 2021 18:07:29: 58000000 INFO @ Fri, 10 Dec 2021 18:07:32: 46000000 INFO @ Fri, 10 Dec 2021 18:07:34: 55000000 INFO @ Fri, 10 Dec 2021 18:07:35: 59000000 INFO @ Fri, 10 Dec 2021 18:07:40: 47000000 INFO @ Fri, 10 Dec 2021 18:07:41: 56000000 INFO @ Fri, 10 Dec 2021 18:07:42: 60000000 INFO @ Fri, 10 Dec 2021 18:07:47: 48000000 INFO @ Fri, 10 Dec 2021 18:07:48: 57000000 INFO @ Fri, 10 Dec 2021 18:07:48: 61000000 INFO @ Fri, 10 Dec 2021 18:07:54: 49000000 INFO @ Fri, 10 Dec 2021 18:07:55: 62000000 INFO @ Fri, 10 Dec 2021 18:07:55: 58000000 INFO @ Fri, 10 Dec 2021 18:08:02: 50000000 INFO @ Fri, 10 Dec 2021 18:08:02: 63000000 INFO @ Fri, 10 Dec 2021 18:08:02: 59000000 INFO @ Fri, 10 Dec 2021 18:08:08: 64000000 INFO @ Fri, 10 Dec 2021 18:08:09: 51000000 INFO @ Fri, 10 Dec 2021 18:08:09: 60000000 INFO @ Fri, 10 Dec 2021 18:08:15: 65000000 INFO @ Fri, 10 Dec 2021 18:08:16: 52000000 INFO @ Fri, 10 Dec 2021 18:08:17: 61000000 INFO @ Fri, 10 Dec 2021 18:08:21: 66000000 INFO @ Fri, 10 Dec 2021 18:08:23: 53000000 INFO @ Fri, 10 Dec 2021 18:08:24: 62000000 INFO @ Fri, 10 Dec 2021 18:08:28: 67000000 INFO @ Fri, 10 Dec 2021 18:08:30: 54000000 INFO @ Fri, 10 Dec 2021 18:08:32: 63000000 INFO @ Fri, 10 Dec 2021 18:08:35: 68000000 INFO @ Fri, 10 Dec 2021 18:08:37: 55000000 INFO @ Fri, 10 Dec 2021 18:08:39: 64000000 INFO @ Fri, 10 Dec 2021 18:08:41: 69000000 INFO @ Fri, 10 Dec 2021 18:08:44: 56000000 INFO @ Fri, 10 Dec 2021 18:08:46: 65000000 INFO @ Fri, 10 Dec 2021 18:08:48: 70000000 INFO @ Fri, 10 Dec 2021 18:08:51: 57000000 INFO @ Fri, 10 Dec 2021 18:08:54: 66000000 INFO @ Fri, 10 Dec 2021 18:08:55: 71000000 INFO @ Fri, 10 Dec 2021 18:08:58: 58000000 INFO @ Fri, 10 Dec 2021 18:09:01: 72000000 INFO @ Fri, 10 Dec 2021 18:09:01: 67000000 INFO @ Fri, 10 Dec 2021 18:09:05: 59000000 INFO @ Fri, 10 Dec 2021 18:09:08: 73000000 INFO @ Fri, 10 Dec 2021 18:09:09: 68000000 INFO @ Fri, 10 Dec 2021 18:09:12: 60000000 INFO @ Fri, 10 Dec 2021 18:09:14: 74000000 INFO @ Fri, 10 Dec 2021 18:09:16: 69000000 INFO @ Fri, 10 Dec 2021 18:09:19: 61000000 INFO @ Fri, 10 Dec 2021 18:09:21: 75000000 INFO @ Fri, 10 Dec 2021 18:09:24: 70000000 INFO @ Fri, 10 Dec 2021 18:09:27: 62000000 INFO @ Fri, 10 Dec 2021 18:09:27: 76000000 INFO @ Fri, 10 Dec 2021 18:09:31: 71000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Fri, 10 Dec 2021 18:09:34: 77000000 INFO @ Fri, 10 Dec 2021 18:09:34: 63000000 INFO @ Fri, 10 Dec 2021 18:09:38: 72000000 INFO @ Fri, 10 Dec 2021 18:09:41: 78000000 INFO @ Fri, 10 Dec 2021 18:09:41: 64000000 INFO @ Fri, 10 Dec 2021 18:09:44: #1 tag size is determined as 120 bps INFO @ Fri, 10 Dec 2021 18:09:44: #1 tag size = 120 INFO @ Fri, 10 Dec 2021 18:09:44: #1 total tags in treatment: 31909943 INFO @ Fri, 10 Dec 2021 18:09:44: #1 user defined the maximum tags... INFO @ Fri, 10 Dec 2021 18:09:44: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Dec 2021 18:09:45: #1 tags after filtering in treatment: 23144205 INFO @ Fri, 10 Dec 2021 18:09:45: #1 Redundant rate of treatment: 0.27 INFO @ Fri, 10 Dec 2021 18:09:45: #1 finished! INFO @ Fri, 10 Dec 2021 18:09:45: #2 Build Peak Model... INFO @ Fri, 10 Dec 2021 18:09:45: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Dec 2021 18:09:45: 73000000 INFO @ Fri, 10 Dec 2021 18:09:47: #2 number of paired peaks: 1094 INFO @ Fri, 10 Dec 2021 18:09:47: start model_add_line... INFO @ Fri, 10 Dec 2021 18:09:47: start X-correlation... INFO @ Fri, 10 Dec 2021 18:09:47: end of X-cor INFO @ Fri, 10 Dec 2021 18:09:47: #2 finished! INFO @ Fri, 10 Dec 2021 18:09:47: #2 predicted fragment length is 111 bps INFO @ Fri, 10 Dec 2021 18:09:47: #2 alternative fragment length(s) may be 111 bps INFO @ Fri, 10 Dec 2021 18:09:47: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/ERX3978809/ERX3978809.05_model.r WARNING @ Fri, 10 Dec 2021 18:09:47: #2 Since the d (111) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 10 Dec 2021 18:09:47: #2 You may need to consider one of the other alternative d(s): 111 WARNING @ Fri, 10 Dec 2021 18:09:47: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 10 Dec 2021 18:09:47: #3 Call peaks... INFO @ Fri, 10 Dec 2021 18:09:47: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 10 Dec 2021 18:09:49: 65000000 INFO @ Fri, 10 Dec 2021 18:09:53: 74000000 INFO @ Fri, 10 Dec 2021 18:09:56: 66000000 INFO @ Fri, 10 Dec 2021 18:10:00: 75000000 INFO @ Fri, 10 Dec 2021 18:10:03: 67000000 INFO @ Fri, 10 Dec 2021 18:10:07: 76000000 INFO @ Fri, 10 Dec 2021 18:10:10: 68000000 INFO @ Fri, 10 Dec 2021 18:10:14: 77000000 INFO @ Fri, 10 Dec 2021 18:10:18: 69000000 INFO @ Fri, 10 Dec 2021 18:10:22: 78000000 INFO @ Fri, 10 Dec 2021 18:10:25: 70000000 INFO @ Fri, 10 Dec 2021 18:10:26: #1 tag size is determined as 120 bps INFO @ Fri, 10 Dec 2021 18:10:26: #1 tag size = 120 INFO @ Fri, 10 Dec 2021 18:10:26: #1 total tags in treatment: 31909943 INFO @ Fri, 10 Dec 2021 18:10:26: #1 user defined the maximum tags... INFO @ Fri, 10 Dec 2021 18:10:26: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Dec 2021 18:10:27: #1 tags after filtering in treatment: 23144205 INFO @ Fri, 10 Dec 2021 18:10:27: #1 Redundant rate of treatment: 0.27 INFO @ Fri, 10 Dec 2021 18:10:27: #1 finished! INFO @ Fri, 10 Dec 2021 18:10:27: #2 Build Peak Model... INFO @ Fri, 10 Dec 2021 18:10:27: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Dec 2021 18:10:28: #2 number of paired peaks: 1094 INFO @ Fri, 10 Dec 2021 18:10:28: start model_add_line... INFO @ Fri, 10 Dec 2021 18:10:28: start X-correlation... INFO @ Fri, 10 Dec 2021 18:10:28: end of X-cor INFO @ Fri, 10 Dec 2021 18:10:28: #2 finished! INFO @ Fri, 10 Dec 2021 18:10:28: #2 predicted fragment length is 111 bps INFO @ Fri, 10 Dec 2021 18:10:28: #2 alternative fragment length(s) may be 111 bps INFO @ Fri, 10 Dec 2021 18:10:28: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/ERX3978809/ERX3978809.10_model.r WARNING @ Fri, 10 Dec 2021 18:10:28: #2 Since the d (111) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 10 Dec 2021 18:10:28: #2 You may need to consider one of the other alternative d(s): 111 WARNING @ Fri, 10 Dec 2021 18:10:28: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 10 Dec 2021 18:10:28: #3 Call peaks... INFO @ Fri, 10 Dec 2021 18:10:28: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 10 Dec 2021 18:10:32: 71000000 INFO @ Fri, 10 Dec 2021 18:10:32: #3 Call peaks for each chromosome... INFO @ Fri, 10 Dec 2021 18:10:38: 72000000 INFO @ Fri, 10 Dec 2021 18:10:44: 73000000 INFO @ Fri, 10 Dec 2021 18:10:51: 74000000 INFO @ Fri, 10 Dec 2021 18:10:57: 75000000 INFO @ Fri, 10 Dec 2021 18:10:57: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/ERX3978809/ERX3978809.05_peaks.xls INFO @ Fri, 10 Dec 2021 18:10:57: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/ERX3978809/ERX3978809.05_peaks.narrowPeak INFO @ Fri, 10 Dec 2021 18:10:57: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/ERX3978809/ERX3978809.05_summits.bed INFO @ Fri, 10 Dec 2021 18:10:57: Done! pass1 - making usageList (15 chroms): 3 millis pass2 - checking and writing primary data (13834 records, 4 fields): 18 millis CompletedMACS2peakCalling INFO @ Fri, 10 Dec 2021 18:11:03: 76000000 INFO @ Fri, 10 Dec 2021 18:11:09: 77000000 INFO @ Fri, 10 Dec 2021 18:11:14: #3 Call peaks for each chromosome... INFO @ Fri, 10 Dec 2021 18:11:16: 78000000 INFO @ Fri, 10 Dec 2021 18:11:20: #1 tag size is determined as 120 bps INFO @ Fri, 10 Dec 2021 18:11:20: #1 tag size = 120 INFO @ Fri, 10 Dec 2021 18:11:20: #1 total tags in treatment: 31909943 INFO @ Fri, 10 Dec 2021 18:11:20: #1 user defined the maximum tags... INFO @ Fri, 10 Dec 2021 18:11:20: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Dec 2021 18:11:20: #1 tags after filtering in treatment: 23144205 INFO @ Fri, 10 Dec 2021 18:11:20: #1 Redundant rate of treatment: 0.27 INFO @ Fri, 10 Dec 2021 18:11:20: #1 finished! INFO @ Fri, 10 Dec 2021 18:11:20: #2 Build Peak Model... INFO @ Fri, 10 Dec 2021 18:11:20: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Dec 2021 18:11:22: #2 number of paired peaks: 1094 INFO @ Fri, 10 Dec 2021 18:11:22: start model_add_line... INFO @ Fri, 10 Dec 2021 18:11:22: start X-correlation... INFO @ Fri, 10 Dec 2021 18:11:22: end of X-cor INFO @ Fri, 10 Dec 2021 18:11:22: #2 finished! INFO @ Fri, 10 Dec 2021 18:11:22: #2 predicted fragment length is 111 bps INFO @ Fri, 10 Dec 2021 18:11:22: #2 alternative fragment length(s) may be 111 bps INFO @ Fri, 10 Dec 2021 18:11:22: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/ERX3978809/ERX3978809.20_model.r WARNING @ Fri, 10 Dec 2021 18:11:22: #2 Since the d (111) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 10 Dec 2021 18:11:22: #2 You may need to consider one of the other alternative d(s): 111 WARNING @ Fri, 10 Dec 2021 18:11:22: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 10 Dec 2021 18:11:22: #3 Call peaks... INFO @ Fri, 10 Dec 2021 18:11:22: #3 Pre-compute pvalue-qvalue table... BigWig に変換しました。 INFO @ Fri, 10 Dec 2021 18:11:39: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/ERX3978809/ERX3978809.10_peaks.xls INFO @ Fri, 10 Dec 2021 18:11:39: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/ERX3978809/ERX3978809.10_peaks.narrowPeak INFO @ Fri, 10 Dec 2021 18:11:39: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/ERX3978809/ERX3978809.10_summits.bed INFO @ Fri, 10 Dec 2021 18:11:39: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (10038 records, 4 fields): 14 millis CompletedMACS2peakCalling INFO @ Fri, 10 Dec 2021 18:12:07: #3 Call peaks for each chromosome... INFO @ Fri, 10 Dec 2021 18:12:32: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/ERX3978809/ERX3978809.20_peaks.xls INFO @ Fri, 10 Dec 2021 18:12:32: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/ERX3978809/ERX3978809.20_peaks.narrowPeak INFO @ Fri, 10 Dec 2021 18:12:32: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/ERX3978809/ERX3978809.20_summits.bed INFO @ Fri, 10 Dec 2021 18:12:32: Done! pass1 - making usageList (14 chroms): 1 millis pass2 - checking and writing primary data (5529 records, 4 fields): 9 millis CompletedMACS2peakCalling