Job ID = 14169929 SRX = ERX3978798 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 25905706 spots for ERR3975830/ERR3975830.sra Written 25905706 spots for ERR3975830/ERR3975830.sra Read 23559277 spots for ERR3975879/ERR3975879.sra Written 23559277 spots for ERR3975879/ERR3975879.sra fastq に変換しました。 bowtie でマッピング中... Your job 14170696 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:29:41 49464983 reads; of these: 49464983 (100.00%) were paired; of these: 16456266 (33.27%) aligned concordantly 0 times 23843041 (48.20%) aligned concordantly exactly 1 time 9165676 (18.53%) aligned concordantly >1 times ---- 16456266 pairs aligned concordantly 0 times; of these: 5766483 (35.04%) aligned discordantly 1 time ---- 10689783 pairs aligned 0 times concordantly or discordantly; of these: 21379566 mates make up the pairs; of these: 16073643 (75.18%) aligned 0 times 936370 (4.38%) aligned exactly 1 time 4369553 (20.44%) aligned >1 times 83.75% overall alignment rate Time searching: 01:29:41 Overall time: 01:29:41 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 56 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 13454646 / 38296441 = 0.3513 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 06:16:06: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/ERX3978798/ERX3978798.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/ERX3978798/ERX3978798.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/ERX3978798/ERX3978798.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/ERX3978798/ERX3978798.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 06:16:06: #1 read tag files... INFO @ Sat, 11 Dec 2021 06:16:06: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 06:16:13: 1000000 INFO @ Sat, 11 Dec 2021 06:16:20: 2000000 INFO @ Sat, 11 Dec 2021 06:16:27: 3000000 INFO @ Sat, 11 Dec 2021 06:16:34: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 06:16:36: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/ERX3978798/ERX3978798.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/ERX3978798/ERX3978798.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/ERX3978798/ERX3978798.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/ERX3978798/ERX3978798.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 06:16:36: #1 read tag files... INFO @ Sat, 11 Dec 2021 06:16:36: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 06:16:41: 5000000 INFO @ Sat, 11 Dec 2021 06:16:43: 1000000 INFO @ Sat, 11 Dec 2021 06:16:48: 6000000 INFO @ Sat, 11 Dec 2021 06:16:50: 2000000 INFO @ Sat, 11 Dec 2021 06:16:55: 7000000 INFO @ Sat, 11 Dec 2021 06:16:57: 3000000 INFO @ Sat, 11 Dec 2021 06:17:02: 8000000 INFO @ Sat, 11 Dec 2021 06:17:04: 4000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 06:17:06: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/ERX3978798/ERX3978798.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/ERX3978798/ERX3978798.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/ERX3978798/ERX3978798.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/ERX3978798/ERX3978798.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 06:17:06: #1 read tag files... INFO @ Sat, 11 Dec 2021 06:17:06: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 06:17:09: 9000000 INFO @ Sat, 11 Dec 2021 06:17:11: 5000000 INFO @ Sat, 11 Dec 2021 06:17:12: 1000000 INFO @ Sat, 11 Dec 2021 06:17:16: 10000000 INFO @ Sat, 11 Dec 2021 06:17:18: 2000000 INFO @ Sat, 11 Dec 2021 06:17:18: 6000000 INFO @ Sat, 11 Dec 2021 06:17:23: 11000000 INFO @ Sat, 11 Dec 2021 06:17:24: 3000000 INFO @ Sat, 11 Dec 2021 06:17:25: 7000000 INFO @ Sat, 11 Dec 2021 06:17:30: 4000000 INFO @ Sat, 11 Dec 2021 06:17:30: 12000000 INFO @ Sat, 11 Dec 2021 06:17:32: 8000000 INFO @ Sat, 11 Dec 2021 06:17:36: 5000000 INFO @ Sat, 11 Dec 2021 06:17:37: 13000000 INFO @ Sat, 11 Dec 2021 06:17:40: 9000000 INFO @ Sat, 11 Dec 2021 06:17:41: 6000000 INFO @ Sat, 11 Dec 2021 06:17:44: 14000000 INFO @ Sat, 11 Dec 2021 06:17:47: 10000000 INFO @ Sat, 11 Dec 2021 06:17:47: 7000000 INFO @ Sat, 11 Dec 2021 06:17:52: 15000000 INFO @ Sat, 11 Dec 2021 06:17:53: 8000000 INFO @ Sat, 11 Dec 2021 06:17:54: 11000000 INFO @ Sat, 11 Dec 2021 06:17:59: 9000000 INFO @ Sat, 11 Dec 2021 06:17:59: 16000000 INFO @ Sat, 11 Dec 2021 06:18:01: 12000000 INFO @ Sat, 11 Dec 2021 06:18:04: 10000000 INFO @ Sat, 11 Dec 2021 06:18:06: 17000000 INFO @ Sat, 11 Dec 2021 06:18:08: 13000000 INFO @ Sat, 11 Dec 2021 06:18:10: 11000000 INFO @ Sat, 11 Dec 2021 06:18:13: 18000000 INFO @ Sat, 11 Dec 2021 06:18:15: 14000000 INFO @ Sat, 11 Dec 2021 06:18:16: 12000000 INFO @ Sat, 11 Dec 2021 06:18:20: 19000000 INFO @ Sat, 11 Dec 2021 06:18:22: 13000000 INFO @ Sat, 11 Dec 2021 06:18:22: 15000000 INFO @ Sat, 11 Dec 2021 06:18:27: 20000000 INFO @ Sat, 11 Dec 2021 06:18:27: 14000000 INFO @ Sat, 11 Dec 2021 06:18:29: 16000000 INFO @ Sat, 11 Dec 2021 06:18:33: 15000000 INFO @ Sat, 11 Dec 2021 06:18:34: 21000000 INFO @ Sat, 11 Dec 2021 06:18:36: 17000000 INFO @ Sat, 11 Dec 2021 06:18:39: 16000000 INFO @ Sat, 11 Dec 2021 06:18:41: 22000000 INFO @ Sat, 11 Dec 2021 06:18:43: 18000000 INFO @ Sat, 11 Dec 2021 06:18:45: 17000000 INFO @ Sat, 11 Dec 2021 06:18:48: 23000000 INFO @ Sat, 11 Dec 2021 06:18:50: 19000000 INFO @ Sat, 11 Dec 2021 06:18:50: 18000000 INFO @ Sat, 11 Dec 2021 06:18:55: 24000000 INFO @ Sat, 11 Dec 2021 06:18:56: 19000000 INFO @ Sat, 11 Dec 2021 06:18:57: 20000000 INFO @ Sat, 11 Dec 2021 06:19:02: 20000000 INFO @ Sat, 11 Dec 2021 06:19:02: 25000000 INFO @ Sat, 11 Dec 2021 06:19:04: 21000000 INFO @ Sat, 11 Dec 2021 06:19:08: 21000000 INFO @ Sat, 11 Dec 2021 06:19:09: 26000000 INFO @ Sat, 11 Dec 2021 06:19:11: 22000000 INFO @ Sat, 11 Dec 2021 06:19:14: 22000000 INFO @ Sat, 11 Dec 2021 06:19:16: 27000000 INFO @ Sat, 11 Dec 2021 06:19:18: 23000000 INFO @ Sat, 11 Dec 2021 06:19:20: 23000000 INFO @ Sat, 11 Dec 2021 06:19:23: 28000000 INFO @ Sat, 11 Dec 2021 06:19:25: 24000000 INFO @ Sat, 11 Dec 2021 06:19:26: 24000000 INFO @ Sat, 11 Dec 2021 06:19:30: 29000000 INFO @ Sat, 11 Dec 2021 06:19:32: 25000000 INFO @ Sat, 11 Dec 2021 06:19:33: 25000000 INFO @ Sat, 11 Dec 2021 06:19:37: 30000000 INFO @ Sat, 11 Dec 2021 06:19:39: 26000000 INFO @ Sat, 11 Dec 2021 06:19:40: 26000000 INFO @ Sat, 11 Dec 2021 06:19:44: 31000000 INFO @ Sat, 11 Dec 2021 06:19:46: 27000000 INFO @ Sat, 11 Dec 2021 06:19:47: 27000000 INFO @ Sat, 11 Dec 2021 06:19:51: 32000000 INFO @ Sat, 11 Dec 2021 06:19:53: 28000000 INFO @ Sat, 11 Dec 2021 06:19:54: 28000000 INFO @ Sat, 11 Dec 2021 06:19:58: 33000000 INFO @ Sat, 11 Dec 2021 06:20:00: 29000000 INFO @ Sat, 11 Dec 2021 06:20:01: 29000000 INFO @ Sat, 11 Dec 2021 06:20:05: 34000000 INFO @ Sat, 11 Dec 2021 06:20:07: 30000000 INFO @ Sat, 11 Dec 2021 06:20:08: 30000000 INFO @ Sat, 11 Dec 2021 06:20:12: 35000000 INFO @ Sat, 11 Dec 2021 06:20:14: 31000000 INFO @ Sat, 11 Dec 2021 06:20:15: 31000000 INFO @ Sat, 11 Dec 2021 06:20:19: 36000000 INFO @ Sat, 11 Dec 2021 06:20:21: 32000000 INFO @ Sat, 11 Dec 2021 06:20:22: 32000000 INFO @ Sat, 11 Dec 2021 06:20:26: 37000000 INFO @ Sat, 11 Dec 2021 06:20:28: 33000000 INFO @ Sat, 11 Dec 2021 06:20:29: 33000000 INFO @ Sat, 11 Dec 2021 06:20:33: 38000000 INFO @ Sat, 11 Dec 2021 06:20:35: 34000000 INFO @ Sat, 11 Dec 2021 06:20:36: 34000000 INFO @ Sat, 11 Dec 2021 06:20:40: 39000000 INFO @ Sat, 11 Dec 2021 06:20:42: 35000000 INFO @ Sat, 11 Dec 2021 06:20:43: 35000000 INFO @ Sat, 11 Dec 2021 06:20:47: 40000000 INFO @ Sat, 11 Dec 2021 06:20:49: 36000000 INFO @ Sat, 11 Dec 2021 06:20:50: 36000000 INFO @ Sat, 11 Dec 2021 06:20:53: 41000000 INFO @ Sat, 11 Dec 2021 06:20:56: 37000000 INFO @ Sat, 11 Dec 2021 06:20:57: 37000000 INFO @ Sat, 11 Dec 2021 06:21:00: 42000000 INFO @ Sat, 11 Dec 2021 06:21:03: 38000000 INFO @ Sat, 11 Dec 2021 06:21:04: 38000000 INFO @ Sat, 11 Dec 2021 06:21:07: 43000000 INFO @ Sat, 11 Dec 2021 06:21:10: 39000000 INFO @ Sat, 11 Dec 2021 06:21:11: 39000000 INFO @ Sat, 11 Dec 2021 06:21:14: 44000000 INFO @ Sat, 11 Dec 2021 06:21:17: 40000000 INFO @ Sat, 11 Dec 2021 06:21:18: 40000000 INFO @ Sat, 11 Dec 2021 06:21:21: 45000000 INFO @ Sat, 11 Dec 2021 06:21:24: 41000000 INFO @ Sat, 11 Dec 2021 06:21:24: 41000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 11 Dec 2021 06:21:28: 46000000 INFO @ Sat, 11 Dec 2021 06:21:31: 42000000 INFO @ Sat, 11 Dec 2021 06:21:31: 42000000 INFO @ Sat, 11 Dec 2021 06:21:35: 47000000 INFO @ Sat, 11 Dec 2021 06:21:38: 43000000 INFO @ Sat, 11 Dec 2021 06:21:38: 43000000 INFO @ Sat, 11 Dec 2021 06:21:42: 48000000 INFO @ Sat, 11 Dec 2021 06:21:44: 44000000 INFO @ Sat, 11 Dec 2021 06:21:45: 44000000 INFO @ Sat, 11 Dec 2021 06:21:49: 49000000 INFO @ Sat, 11 Dec 2021 06:21:52: 45000000 INFO @ Sat, 11 Dec 2021 06:21:52: 45000000 INFO @ Sat, 11 Dec 2021 06:21:55: 50000000 INFO @ Sat, 11 Dec 2021 06:21:59: 46000000 INFO @ Sat, 11 Dec 2021 06:21:59: 46000000 INFO @ Sat, 11 Dec 2021 06:22:02: 51000000 INFO @ Sat, 11 Dec 2021 06:22:06: 47000000 INFO @ Sat, 11 Dec 2021 06:22:06: 47000000 INFO @ Sat, 11 Dec 2021 06:22:09: 52000000 INFO @ Sat, 11 Dec 2021 06:22:13: 48000000 INFO @ Sat, 11 Dec 2021 06:22:13: 48000000 INFO @ Sat, 11 Dec 2021 06:22:16: 53000000 INFO @ Sat, 11 Dec 2021 06:22:20: 49000000 INFO @ Sat, 11 Dec 2021 06:22:20: 49000000 INFO @ Sat, 11 Dec 2021 06:22:22: 54000000 INFO @ Sat, 11 Dec 2021 06:22:26: 50000000 INFO @ Sat, 11 Dec 2021 06:22:27: 50000000 INFO @ Sat, 11 Dec 2021 06:22:29: 55000000 BigWig に変換しました。 INFO @ Sat, 11 Dec 2021 06:22:33: 51000000 INFO @ Sat, 11 Dec 2021 06:22:34: 51000000 INFO @ Sat, 11 Dec 2021 06:22:36: #1 tag size is determined as 118 bps INFO @ Sat, 11 Dec 2021 06:22:36: #1 tag size = 118 INFO @ Sat, 11 Dec 2021 06:22:36: #1 total tags in treatment: 20688626 INFO @ Sat, 11 Dec 2021 06:22:36: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 06:22:36: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 06:22:36: #1 tags after filtering in treatment: 15263594 INFO @ Sat, 11 Dec 2021 06:22:36: #1 Redundant rate of treatment: 0.26 INFO @ Sat, 11 Dec 2021 06:22:36: #1 finished! INFO @ Sat, 11 Dec 2021 06:22:36: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 06:22:36: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 06:22:37: #2 number of paired peaks: 2424 INFO @ Sat, 11 Dec 2021 06:22:37: start model_add_line... INFO @ Sat, 11 Dec 2021 06:22:37: start X-correlation... INFO @ Sat, 11 Dec 2021 06:22:37: end of X-cor INFO @ Sat, 11 Dec 2021 06:22:37: #2 finished! INFO @ Sat, 11 Dec 2021 06:22:37: #2 predicted fragment length is 125 bps INFO @ Sat, 11 Dec 2021 06:22:37: #2 alternative fragment length(s) may be 125 bps INFO @ Sat, 11 Dec 2021 06:22:37: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/ERX3978798/ERX3978798.05_model.r WARNING @ Sat, 11 Dec 2021 06:22:37: #2 Since the d (125) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Dec 2021 06:22:37: #2 You may need to consider one of the other alternative d(s): 125 WARNING @ Sat, 11 Dec 2021 06:22:37: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Dec 2021 06:22:37: #3 Call peaks... INFO @ Sat, 11 Dec 2021 06:22:37: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 06:22:40: 52000000 INFO @ Sat, 11 Dec 2021 06:22:40: 52000000 INFO @ Sat, 11 Dec 2021 06:22:46: 53000000 INFO @ Sat, 11 Dec 2021 06:22:47: 53000000 INFO @ Sat, 11 Dec 2021 06:22:53: 54000000 INFO @ Sat, 11 Dec 2021 06:22:54: 54000000 INFO @ Sat, 11 Dec 2021 06:23:00: 55000000 INFO @ Sat, 11 Dec 2021 06:23:01: 55000000 INFO @ Sat, 11 Dec 2021 06:23:07: #1 tag size is determined as 118 bps INFO @ Sat, 11 Dec 2021 06:23:07: #1 tag size = 118 INFO @ Sat, 11 Dec 2021 06:23:07: #1 total tags in treatment: 20688626 INFO @ Sat, 11 Dec 2021 06:23:07: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 06:23:07: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 06:23:07: #1 tags after filtering in treatment: 15263594 INFO @ Sat, 11 Dec 2021 06:23:07: #1 Redundant rate of treatment: 0.26 INFO @ Sat, 11 Dec 2021 06:23:07: #1 finished! INFO @ Sat, 11 Dec 2021 06:23:07: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 06:23:07: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 06:23:07: #1 tag size is determined as 118 bps INFO @ Sat, 11 Dec 2021 06:23:07: #1 tag size = 118 INFO @ Sat, 11 Dec 2021 06:23:07: #1 total tags in treatment: 20688626 INFO @ Sat, 11 Dec 2021 06:23:07: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 06:23:07: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 06:23:07: #1 tags after filtering in treatment: 15263594 INFO @ Sat, 11 Dec 2021 06:23:07: #1 Redundant rate of treatment: 0.26 INFO @ Sat, 11 Dec 2021 06:23:07: #1 finished! INFO @ Sat, 11 Dec 2021 06:23:07: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 06:23:07: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 06:23:08: #2 number of paired peaks: 2424 INFO @ Sat, 11 Dec 2021 06:23:08: start model_add_line... INFO @ Sat, 11 Dec 2021 06:23:08: start X-correlation... INFO @ Sat, 11 Dec 2021 06:23:08: end of X-cor INFO @ Sat, 11 Dec 2021 06:23:08: #2 finished! INFO @ Sat, 11 Dec 2021 06:23:08: #2 predicted fragment length is 125 bps INFO @ Sat, 11 Dec 2021 06:23:08: #2 alternative fragment length(s) may be 125 bps INFO @ Sat, 11 Dec 2021 06:23:08: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/ERX3978798/ERX3978798.10_model.r WARNING @ Sat, 11 Dec 2021 06:23:08: #2 Since the d (125) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Dec 2021 06:23:08: #2 You may need to consider one of the other alternative d(s): 125 WARNING @ Sat, 11 Dec 2021 06:23:08: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Dec 2021 06:23:08: #3 Call peaks... INFO @ Sat, 11 Dec 2021 06:23:08: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 06:23:09: #2 number of paired peaks: 2424 INFO @ Sat, 11 Dec 2021 06:23:09: start model_add_line... INFO @ Sat, 11 Dec 2021 06:23:09: start X-correlation... INFO @ Sat, 11 Dec 2021 06:23:09: end of X-cor INFO @ Sat, 11 Dec 2021 06:23:09: #2 finished! INFO @ Sat, 11 Dec 2021 06:23:09: #2 predicted fragment length is 125 bps INFO @ Sat, 11 Dec 2021 06:23:09: #2 alternative fragment length(s) may be 125 bps INFO @ Sat, 11 Dec 2021 06:23:09: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/ERX3978798/ERX3978798.20_model.r WARNING @ Sat, 11 Dec 2021 06:23:09: #2 Since the d (125) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Dec 2021 06:23:09: #2 You may need to consider one of the other alternative d(s): 125 WARNING @ Sat, 11 Dec 2021 06:23:09: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Dec 2021 06:23:09: #3 Call peaks... INFO @ Sat, 11 Dec 2021 06:23:09: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 06:23:10: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 06:23:26: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/ERX3978798/ERX3978798.05_peaks.xls INFO @ Sat, 11 Dec 2021 06:23:26: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/ERX3978798/ERX3978798.05_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 06:23:26: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/ERX3978798/ERX3978798.05_summits.bed INFO @ Sat, 11 Dec 2021 06:23:26: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (13823 records, 4 fields): 14 millis CompletedMACS2peakCalling INFO @ Sat, 11 Dec 2021 06:23:40: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 06:23:40: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 06:23:56: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/ERX3978798/ERX3978798.10_peaks.xls INFO @ Sat, 11 Dec 2021 06:23:56: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/ERX3978798/ERX3978798.10_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 06:23:56: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/ERX3978798/ERX3978798.10_summits.bed INFO @ Sat, 11 Dec 2021 06:23:56: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (10360 records, 4 fields): 10 millis CompletedMACS2peakCalling INFO @ Sat, 11 Dec 2021 06:23:56: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/ERX3978798/ERX3978798.20_peaks.xls INFO @ Sat, 11 Dec 2021 06:23:57: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/ERX3978798/ERX3978798.20_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 06:23:57: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/ERX3978798/ERX3978798.20_summits.bed INFO @ Sat, 11 Dec 2021 06:23:57: Done! pass1 - making usageList (14 chroms): 1 millis pass2 - checking and writing primary data (6132 records, 4 fields): 7 millis CompletedMACS2peakCalling