Job ID = 14169928 SRX = ERX3978797 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 16557535 spots for ERR3975829/ERR3975829.sra Written 16557535 spots for ERR3975829/ERR3975829.sra Read 19097524 spots for ERR3975837/ERR3975837.sra Written 19097524 spots for ERR3975837/ERR3975837.sra fastq に変換しました。 bowtie でマッピング中... Your job 14170694 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:30:41 35655059 reads; of these: 35655059 (100.00%) were paired; of these: 6557207 (18.39%) aligned concordantly 0 times 21530169 (60.38%) aligned concordantly exactly 1 time 7567683 (21.22%) aligned concordantly >1 times ---- 6557207 pairs aligned concordantly 0 times; of these: 3226395 (49.20%) aligned discordantly 1 time ---- 3330812 pairs aligned 0 times concordantly or discordantly; of these: 6661624 mates make up the pairs; of these: 3345039 (50.21%) aligned 0 times 1203132 (18.06%) aligned exactly 1 time 2113453 (31.73%) aligned >1 times 95.31% overall alignment rate Time searching: 01:30:41 Overall time: 01:30:41 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 36 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 6747347 / 32077108 = 0.2103 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 06:10:31: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/ERX3978797/ERX3978797.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/ERX3978797/ERX3978797.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/ERX3978797/ERX3978797.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/ERX3978797/ERX3978797.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 06:10:31: #1 read tag files... INFO @ Sat, 11 Dec 2021 06:10:31: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 06:10:36: 1000000 INFO @ Sat, 11 Dec 2021 06:10:42: 2000000 INFO @ Sat, 11 Dec 2021 06:10:48: 3000000 INFO @ Sat, 11 Dec 2021 06:10:53: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 06:10:59: 5000000 INFO @ Sat, 11 Dec 2021 06:11:01: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/ERX3978797/ERX3978797.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/ERX3978797/ERX3978797.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/ERX3978797/ERX3978797.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/ERX3978797/ERX3978797.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 06:11:01: #1 read tag files... INFO @ Sat, 11 Dec 2021 06:11:01: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 06:11:05: 6000000 INFO @ Sat, 11 Dec 2021 06:11:07: 1000000 INFO @ Sat, 11 Dec 2021 06:11:11: 7000000 INFO @ Sat, 11 Dec 2021 06:11:13: 2000000 INFO @ Sat, 11 Dec 2021 06:11:17: 8000000 INFO @ Sat, 11 Dec 2021 06:11:19: 3000000 INFO @ Sat, 11 Dec 2021 06:11:23: 9000000 INFO @ Sat, 11 Dec 2021 06:11:25: 4000000 BedGraph に変換中... INFO @ Sat, 11 Dec 2021 06:11:29: 10000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 06:11:31: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/ERX3978797/ERX3978797.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/ERX3978797/ERX3978797.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/ERX3978797/ERX3978797.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/ERX3978797/ERX3978797.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 06:11:31: #1 read tag files... INFO @ Sat, 11 Dec 2021 06:11:31: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 06:11:31: 5000000 INFO @ Sat, 11 Dec 2021 06:11:35: 11000000 INFO @ Sat, 11 Dec 2021 06:11:37: 1000000 INFO @ Sat, 11 Dec 2021 06:11:37: 6000000 INFO @ Sat, 11 Dec 2021 06:11:41: 12000000 INFO @ Sat, 11 Dec 2021 06:11:43: 2000000 INFO @ Sat, 11 Dec 2021 06:11:43: 7000000 INFO @ Sat, 11 Dec 2021 06:11:47: 13000000 INFO @ Sat, 11 Dec 2021 06:11:49: 3000000 INFO @ Sat, 11 Dec 2021 06:11:49: 8000000 INFO @ Sat, 11 Dec 2021 06:11:53: 14000000 INFO @ Sat, 11 Dec 2021 06:11:55: 4000000 INFO @ Sat, 11 Dec 2021 06:11:55: 9000000 INFO @ Sat, 11 Dec 2021 06:11:59: 15000000 INFO @ Sat, 11 Dec 2021 06:12:01: 10000000 INFO @ Sat, 11 Dec 2021 06:12:01: 5000000 INFO @ Sat, 11 Dec 2021 06:12:06: 16000000 INFO @ Sat, 11 Dec 2021 06:12:07: 11000000 INFO @ Sat, 11 Dec 2021 06:12:07: 6000000 INFO @ Sat, 11 Dec 2021 06:12:12: 17000000 INFO @ Sat, 11 Dec 2021 06:12:13: 12000000 INFO @ Sat, 11 Dec 2021 06:12:14: 7000000 INFO @ Sat, 11 Dec 2021 06:12:18: 18000000 INFO @ Sat, 11 Dec 2021 06:12:20: 13000000 INFO @ Sat, 11 Dec 2021 06:12:20: 8000000 INFO @ Sat, 11 Dec 2021 06:12:24: 19000000 INFO @ Sat, 11 Dec 2021 06:12:26: 14000000 INFO @ Sat, 11 Dec 2021 06:12:26: 9000000 INFO @ Sat, 11 Dec 2021 06:12:30: 20000000 INFO @ Sat, 11 Dec 2021 06:12:32: 15000000 INFO @ Sat, 11 Dec 2021 06:12:32: 10000000 INFO @ Sat, 11 Dec 2021 06:12:36: 21000000 INFO @ Sat, 11 Dec 2021 06:12:38: 11000000 INFO @ Sat, 11 Dec 2021 06:12:38: 16000000 INFO @ Sat, 11 Dec 2021 06:12:42: 22000000 INFO @ Sat, 11 Dec 2021 06:12:44: 12000000 INFO @ Sat, 11 Dec 2021 06:12:44: 17000000 INFO @ Sat, 11 Dec 2021 06:12:48: 23000000 INFO @ Sat, 11 Dec 2021 06:12:50: 13000000 INFO @ Sat, 11 Dec 2021 06:12:50: 18000000 INFO @ Sat, 11 Dec 2021 06:12:54: 24000000 INFO @ Sat, 11 Dec 2021 06:12:56: 14000000 INFO @ Sat, 11 Dec 2021 06:12:57: 19000000 INFO @ Sat, 11 Dec 2021 06:13:00: 25000000 INFO @ Sat, 11 Dec 2021 06:13:02: 15000000 INFO @ Sat, 11 Dec 2021 06:13:03: 20000000 INFO @ Sat, 11 Dec 2021 06:13:06: 26000000 INFO @ Sat, 11 Dec 2021 06:13:08: 16000000 INFO @ Sat, 11 Dec 2021 06:13:09: 21000000 INFO @ Sat, 11 Dec 2021 06:13:12: 27000000 INFO @ Sat, 11 Dec 2021 06:13:14: 17000000 INFO @ Sat, 11 Dec 2021 06:13:15: 22000000 INFO @ Sat, 11 Dec 2021 06:13:18: 28000000 INFO @ Sat, 11 Dec 2021 06:13:21: 18000000 INFO @ Sat, 11 Dec 2021 06:13:21: 23000000 INFO @ Sat, 11 Dec 2021 06:13:23: 29000000 INFO @ Sat, 11 Dec 2021 06:13:27: 19000000 INFO @ Sat, 11 Dec 2021 06:13:27: 24000000 INFO @ Sat, 11 Dec 2021 06:13:29: 30000000 INFO @ Sat, 11 Dec 2021 06:13:33: 20000000 INFO @ Sat, 11 Dec 2021 06:13:33: 25000000 INFO @ Sat, 11 Dec 2021 06:13:35: 31000000 INFO @ Sat, 11 Dec 2021 06:13:39: 21000000 INFO @ Sat, 11 Dec 2021 06:13:39: 26000000 INFO @ Sat, 11 Dec 2021 06:13:41: 32000000 INFO @ Sat, 11 Dec 2021 06:13:45: 22000000 INFO @ Sat, 11 Dec 2021 06:13:45: 27000000 INFO @ Sat, 11 Dec 2021 06:13:47: 33000000 INFO @ Sat, 11 Dec 2021 06:13:51: 23000000 INFO @ Sat, 11 Dec 2021 06:13:51: 28000000 INFO @ Sat, 11 Dec 2021 06:13:53: 34000000 INFO @ Sat, 11 Dec 2021 06:13:57: 24000000 INFO @ Sat, 11 Dec 2021 06:13:57: 29000000 INFO @ Sat, 11 Dec 2021 06:13:59: 35000000 INFO @ Sat, 11 Dec 2021 06:14:03: 30000000 INFO @ Sat, 11 Dec 2021 06:14:03: 25000000 INFO @ Sat, 11 Dec 2021 06:14:05: 36000000 INFO @ Sat, 11 Dec 2021 06:14:09: 26000000 INFO @ Sat, 11 Dec 2021 06:14:09: 31000000 INFO @ Sat, 11 Dec 2021 06:14:11: 37000000 INFO @ Sat, 11 Dec 2021 06:14:14: 27000000 INFO @ Sat, 11 Dec 2021 06:14:14: 32000000 INFO @ Sat, 11 Dec 2021 06:14:17: 38000000 INFO @ Sat, 11 Dec 2021 06:14:20: 28000000 INFO @ Sat, 11 Dec 2021 06:14:20: 33000000 INFO @ Sat, 11 Dec 2021 06:14:23: 39000000 INFO @ Sat, 11 Dec 2021 06:14:26: 29000000 INFO @ Sat, 11 Dec 2021 06:14:26: 34000000 INFO @ Sat, 11 Dec 2021 06:14:29: 40000000 INFO @ Sat, 11 Dec 2021 06:14:32: 30000000 INFO @ Sat, 11 Dec 2021 06:14:32: 35000000 INFO @ Sat, 11 Dec 2021 06:14:34: 41000000 INFO @ Sat, 11 Dec 2021 06:14:38: 31000000 INFO @ Sat, 11 Dec 2021 06:14:38: 36000000 INFO @ Sat, 11 Dec 2021 06:14:40: 42000000 INFO @ Sat, 11 Dec 2021 06:14:44: 32000000 INFO @ Sat, 11 Dec 2021 06:14:44: 37000000 INFO @ Sat, 11 Dec 2021 06:14:46: 43000000 INFO @ Sat, 11 Dec 2021 06:14:50: 33000000 INFO @ Sat, 11 Dec 2021 06:14:50: 38000000 INFO @ Sat, 11 Dec 2021 06:14:53: 44000000 INFO @ Sat, 11 Dec 2021 06:14:56: 39000000 INFO @ Sat, 11 Dec 2021 06:14:56: 34000000 INFO @ Sat, 11 Dec 2021 06:14:59: 45000000 INFO @ Sat, 11 Dec 2021 06:15:02: 40000000 INFO @ Sat, 11 Dec 2021 06:15:02: 35000000 INFO @ Sat, 11 Dec 2021 06:15:05: 46000000 INFO @ Sat, 11 Dec 2021 06:15:08: 41000000 INFO @ Sat, 11 Dec 2021 06:15:08: 36000000 INFO @ Sat, 11 Dec 2021 06:15:11: 47000000 INFO @ Sat, 11 Dec 2021 06:15:13: 42000000 INFO @ Sat, 11 Dec 2021 06:15:14: 37000000 INFO @ Sat, 11 Dec 2021 06:15:17: 48000000 INFO @ Sat, 11 Dec 2021 06:15:19: 43000000 INFO @ Sat, 11 Dec 2021 06:15:20: 38000000 INFO @ Sat, 11 Dec 2021 06:15:23: 49000000 INFO @ Sat, 11 Dec 2021 06:15:25: 44000000 INFO @ Sat, 11 Dec 2021 06:15:26: 39000000 INFO @ Sat, 11 Dec 2021 06:15:29: 50000000 INFO @ Sat, 11 Dec 2021 06:15:31: 45000000 INFO @ Sat, 11 Dec 2021 06:15:31: 40000000 INFO @ Sat, 11 Dec 2021 06:15:34: 51000000 INFO @ Sat, 11 Dec 2021 06:15:37: 41000000 INFO @ Sat, 11 Dec 2021 06:15:37: 46000000 INFO @ Sat, 11 Dec 2021 06:15:40: 52000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 11 Dec 2021 06:15:43: 42000000 INFO @ Sat, 11 Dec 2021 06:15:43: 47000000 INFO @ Sat, 11 Dec 2021 06:15:46: 53000000 INFO @ Sat, 11 Dec 2021 06:15:49: 43000000 INFO @ Sat, 11 Dec 2021 06:15:49: 48000000 INFO @ Sat, 11 Dec 2021 06:15:52: 54000000 INFO @ Sat, 11 Dec 2021 06:15:55: 44000000 INFO @ Sat, 11 Dec 2021 06:15:55: 49000000 INFO @ Sat, 11 Dec 2021 06:15:55: #1 tag size is determined as 118 bps INFO @ Sat, 11 Dec 2021 06:15:55: #1 tag size = 118 INFO @ Sat, 11 Dec 2021 06:15:55: #1 total tags in treatment: 22720351 INFO @ Sat, 11 Dec 2021 06:15:55: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 06:15:55: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 06:15:56: #1 tags after filtering in treatment: 16274026 INFO @ Sat, 11 Dec 2021 06:15:56: #1 Redundant rate of treatment: 0.28 INFO @ Sat, 11 Dec 2021 06:15:56: #1 finished! INFO @ Sat, 11 Dec 2021 06:15:56: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 06:15:56: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 06:15:57: #2 number of paired peaks: 2819 INFO @ Sat, 11 Dec 2021 06:15:57: start model_add_line... INFO @ Sat, 11 Dec 2021 06:15:57: start X-correlation... INFO @ Sat, 11 Dec 2021 06:15:57: end of X-cor INFO @ Sat, 11 Dec 2021 06:15:57: #2 finished! INFO @ Sat, 11 Dec 2021 06:15:57: #2 predicted fragment length is 168 bps INFO @ Sat, 11 Dec 2021 06:15:57: #2 alternative fragment length(s) may be 168 bps INFO @ Sat, 11 Dec 2021 06:15:57: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/ERX3978797/ERX3978797.05_model.r WARNING @ Sat, 11 Dec 2021 06:15:58: #2 Since the d (168) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Dec 2021 06:15:58: #2 You may need to consider one of the other alternative d(s): 168 WARNING @ Sat, 11 Dec 2021 06:15:58: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Dec 2021 06:15:58: #3 Call peaks... INFO @ Sat, 11 Dec 2021 06:15:58: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 06:16:01: 45000000 INFO @ Sat, 11 Dec 2021 06:16:01: 50000000 INFO @ Sat, 11 Dec 2021 06:16:07: 46000000 INFO @ Sat, 11 Dec 2021 06:16:07: 51000000 INFO @ Sat, 11 Dec 2021 06:16:13: 47000000 INFO @ Sat, 11 Dec 2021 06:16:13: 52000000 INFO @ Sat, 11 Dec 2021 06:16:19: 48000000 INFO @ Sat, 11 Dec 2021 06:16:19: 53000000 INFO @ Sat, 11 Dec 2021 06:16:25: 49000000 INFO @ Sat, 11 Dec 2021 06:16:25: 54000000 INFO @ Sat, 11 Dec 2021 06:16:28: #1 tag size is determined as 118 bps INFO @ Sat, 11 Dec 2021 06:16:28: #1 tag size = 118 INFO @ Sat, 11 Dec 2021 06:16:28: #1 total tags in treatment: 22720351 INFO @ Sat, 11 Dec 2021 06:16:28: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 06:16:28: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 06:16:28: #1 tags after filtering in treatment: 16274026 INFO @ Sat, 11 Dec 2021 06:16:28: #1 Redundant rate of treatment: 0.28 INFO @ Sat, 11 Dec 2021 06:16:28: #1 finished! INFO @ Sat, 11 Dec 2021 06:16:28: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 06:16:28: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 06:16:30: #2 number of paired peaks: 2819 INFO @ Sat, 11 Dec 2021 06:16:30: start model_add_line... INFO @ Sat, 11 Dec 2021 06:16:30: start X-correlation... INFO @ Sat, 11 Dec 2021 06:16:30: end of X-cor INFO @ Sat, 11 Dec 2021 06:16:30: #2 finished! INFO @ Sat, 11 Dec 2021 06:16:30: #2 predicted fragment length is 168 bps INFO @ Sat, 11 Dec 2021 06:16:30: #2 alternative fragment length(s) may be 168 bps INFO @ Sat, 11 Dec 2021 06:16:30: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/ERX3978797/ERX3978797.10_model.r WARNING @ Sat, 11 Dec 2021 06:16:30: #2 Since the d (168) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Dec 2021 06:16:30: #2 You may need to consider one of the other alternative d(s): 168 WARNING @ Sat, 11 Dec 2021 06:16:30: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Dec 2021 06:16:30: #3 Call peaks... INFO @ Sat, 11 Dec 2021 06:16:30: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 06:16:30: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 06:16:31: 50000000 INFO @ Sat, 11 Dec 2021 06:16:37: 51000000 INFO @ Sat, 11 Dec 2021 06:16:42: 52000000 INFO @ Sat, 11 Dec 2021 06:16:47: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/ERX3978797/ERX3978797.05_peaks.xls INFO @ Sat, 11 Dec 2021 06:16:47: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/ERX3978797/ERX3978797.05_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 06:16:47: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/ERX3978797/ERX3978797.05_summits.bed INFO @ Sat, 11 Dec 2021 06:16:47: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (10901 records, 4 fields): 23 millis CompletedMACS2peakCalling INFO @ Sat, 11 Dec 2021 06:16:48: 53000000 BigWig に変換しました。 INFO @ Sat, 11 Dec 2021 06:16:54: 54000000 INFO @ Sat, 11 Dec 2021 06:16:57: #1 tag size is determined as 118 bps INFO @ Sat, 11 Dec 2021 06:16:57: #1 tag size = 118 INFO @ Sat, 11 Dec 2021 06:16:57: #1 total tags in treatment: 22720351 INFO @ Sat, 11 Dec 2021 06:16:57: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 06:16:57: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 06:16:57: #1 tags after filtering in treatment: 16274026 INFO @ Sat, 11 Dec 2021 06:16:57: #1 Redundant rate of treatment: 0.28 INFO @ Sat, 11 Dec 2021 06:16:57: #1 finished! INFO @ Sat, 11 Dec 2021 06:16:57: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 06:16:57: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 06:16:58: #2 number of paired peaks: 2819 INFO @ Sat, 11 Dec 2021 06:16:58: start model_add_line... INFO @ Sat, 11 Dec 2021 06:16:59: start X-correlation... INFO @ Sat, 11 Dec 2021 06:16:59: end of X-cor INFO @ Sat, 11 Dec 2021 06:16:59: #2 finished! INFO @ Sat, 11 Dec 2021 06:16:59: #2 predicted fragment length is 168 bps INFO @ Sat, 11 Dec 2021 06:16:59: #2 alternative fragment length(s) may be 168 bps INFO @ Sat, 11 Dec 2021 06:16:59: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/ERX3978797/ERX3978797.20_model.r WARNING @ Sat, 11 Dec 2021 06:16:59: #2 Since the d (168) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Dec 2021 06:16:59: #2 You may need to consider one of the other alternative d(s): 168 WARNING @ Sat, 11 Dec 2021 06:16:59: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Dec 2021 06:16:59: #3 Call peaks... INFO @ Sat, 11 Dec 2021 06:16:59: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 06:17:03: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 06:17:19: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/ERX3978797/ERX3978797.10_peaks.xls INFO @ Sat, 11 Dec 2021 06:17:19: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/ERX3978797/ERX3978797.10_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 06:17:19: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/ERX3978797/ERX3978797.10_summits.bed INFO @ Sat, 11 Dec 2021 06:17:19: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (8518 records, 4 fields): 9 millis CompletedMACS2peakCalling INFO @ Sat, 11 Dec 2021 06:17:32: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 06:17:48: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/ERX3978797/ERX3978797.20_peaks.xls INFO @ Sat, 11 Dec 2021 06:17:48: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/ERX3978797/ERX3978797.20_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 06:17:48: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/ERX3978797/ERX3978797.20_summits.bed INFO @ Sat, 11 Dec 2021 06:17:48: Done! pass1 - making usageList (15 chroms): 1 millis pass2 - checking and writing primary data (5716 records, 4 fields): 7 millis CompletedMACS2peakCalling