Job ID = 14169876 SRX = ERX3978791 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 32668698 spots for ERR3975821/ERR3975821.sra Written 32668698 spots for ERR3975821/ERR3975821.sra Read 25655257 spots for ERR3975858/ERR3975858.sra Written 25655257 spots for ERR3975858/ERR3975858.sra fastq に変換しました。 bowtie でマッピング中... Your job 14170711 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 02:00:58 58323955 reads; of these: 58323955 (100.00%) were paired; of these: 13581171 (23.29%) aligned concordantly 0 times 29113851 (49.92%) aligned concordantly exactly 1 time 15628933 (26.80%) aligned concordantly >1 times ---- 13581171 pairs aligned concordantly 0 times; of these: 4776362 (35.17%) aligned discordantly 1 time ---- 8804809 pairs aligned 0 times concordantly or discordantly; of these: 17609618 mates make up the pairs; of these: 11253676 (63.91%) aligned 0 times 1113016 (6.32%) aligned exactly 1 time 5242926 (29.77%) aligned >1 times 90.35% overall alignment rate Time searching: 02:00:58 Overall time: 02:00:58 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 68 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 13718725 / 48998125 = 0.2800 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 06:31:58: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/ERX3978791/ERX3978791.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/ERX3978791/ERX3978791.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/ERX3978791/ERX3978791.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/ERX3978791/ERX3978791.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 06:31:58: #1 read tag files... INFO @ Sat, 11 Dec 2021 06:31:58: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 06:32:04: 1000000 INFO @ Sat, 11 Dec 2021 06:32:10: 2000000 INFO @ Sat, 11 Dec 2021 06:32:16: 3000000 INFO @ Sat, 11 Dec 2021 06:32:21: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 06:32:27: 5000000 INFO @ Sat, 11 Dec 2021 06:32:28: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/ERX3978791/ERX3978791.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/ERX3978791/ERX3978791.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/ERX3978791/ERX3978791.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/ERX3978791/ERX3978791.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 06:32:28: #1 read tag files... INFO @ Sat, 11 Dec 2021 06:32:28: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 06:32:34: 6000000 INFO @ Sat, 11 Dec 2021 06:32:36: 1000000 INFO @ Sat, 11 Dec 2021 06:32:40: 7000000 INFO @ Sat, 11 Dec 2021 06:32:43: 2000000 INFO @ Sat, 11 Dec 2021 06:32:46: 8000000 INFO @ Sat, 11 Dec 2021 06:32:50: 3000000 INFO @ Sat, 11 Dec 2021 06:32:53: 9000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 06:32:58: 4000000 INFO @ Sat, 11 Dec 2021 06:32:58: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/ERX3978791/ERX3978791.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/ERX3978791/ERX3978791.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/ERX3978791/ERX3978791.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/ERX3978791/ERX3978791.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 06:32:58: #1 read tag files... INFO @ Sat, 11 Dec 2021 06:32:58: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 06:32:59: 10000000 INFO @ Sat, 11 Dec 2021 06:33:05: 5000000 INFO @ Sat, 11 Dec 2021 06:33:05: 11000000 INFO @ Sat, 11 Dec 2021 06:33:06: 1000000 INFO @ Sat, 11 Dec 2021 06:33:12: 12000000 INFO @ Sat, 11 Dec 2021 06:33:13: 6000000 INFO @ Sat, 11 Dec 2021 06:33:13: 2000000 INFO @ Sat, 11 Dec 2021 06:33:18: 13000000 INFO @ Sat, 11 Dec 2021 06:33:20: 7000000 INFO @ Sat, 11 Dec 2021 06:33:21: 3000000 INFO @ Sat, 11 Dec 2021 06:33:24: 14000000 INFO @ Sat, 11 Dec 2021 06:33:27: 8000000 INFO @ Sat, 11 Dec 2021 06:33:29: 4000000 INFO @ Sat, 11 Dec 2021 06:33:31: 15000000 INFO @ Sat, 11 Dec 2021 06:33:35: 9000000 INFO @ Sat, 11 Dec 2021 06:33:36: 5000000 INFO @ Sat, 11 Dec 2021 06:33:37: 16000000 INFO @ Sat, 11 Dec 2021 06:33:42: 10000000 INFO @ Sat, 11 Dec 2021 06:33:44: 17000000 INFO @ Sat, 11 Dec 2021 06:33:44: 6000000 INFO @ Sat, 11 Dec 2021 06:33:49: 11000000 INFO @ Sat, 11 Dec 2021 06:33:50: 18000000 INFO @ Sat, 11 Dec 2021 06:33:51: 7000000 INFO @ Sat, 11 Dec 2021 06:33:56: 12000000 INFO @ Sat, 11 Dec 2021 06:33:57: 19000000 INFO @ Sat, 11 Dec 2021 06:33:59: 8000000 INFO @ Sat, 11 Dec 2021 06:34:03: 20000000 INFO @ Sat, 11 Dec 2021 06:34:04: 13000000 INFO @ Sat, 11 Dec 2021 06:34:06: 9000000 INFO @ Sat, 11 Dec 2021 06:34:10: 21000000 INFO @ Sat, 11 Dec 2021 06:34:11: 14000000 INFO @ Sat, 11 Dec 2021 06:34:14: 10000000 INFO @ Sat, 11 Dec 2021 06:34:16: 22000000 INFO @ Sat, 11 Dec 2021 06:34:18: 15000000 INFO @ Sat, 11 Dec 2021 06:34:21: 11000000 INFO @ Sat, 11 Dec 2021 06:34:23: 23000000 INFO @ Sat, 11 Dec 2021 06:34:26: 16000000 INFO @ Sat, 11 Dec 2021 06:34:28: 12000000 INFO @ Sat, 11 Dec 2021 06:34:29: 24000000 INFO @ Sat, 11 Dec 2021 06:34:33: 17000000 INFO @ Sat, 11 Dec 2021 06:34:35: 25000000 INFO @ Sat, 11 Dec 2021 06:34:36: 13000000 INFO @ Sat, 11 Dec 2021 06:34:40: 18000000 INFO @ Sat, 11 Dec 2021 06:34:42: 26000000 INFO @ Sat, 11 Dec 2021 06:34:43: 14000000 INFO @ Sat, 11 Dec 2021 06:34:47: 19000000 INFO @ Sat, 11 Dec 2021 06:34:48: 27000000 INFO @ Sat, 11 Dec 2021 06:34:51: 15000000 INFO @ Sat, 11 Dec 2021 06:34:55: 20000000 INFO @ Sat, 11 Dec 2021 06:34:55: 28000000 INFO @ Sat, 11 Dec 2021 06:34:58: 16000000 INFO @ Sat, 11 Dec 2021 06:35:01: 29000000 INFO @ Sat, 11 Dec 2021 06:35:02: 21000000 INFO @ Sat, 11 Dec 2021 06:35:06: 17000000 INFO @ Sat, 11 Dec 2021 06:35:08: 30000000 INFO @ Sat, 11 Dec 2021 06:35:10: 22000000 INFO @ Sat, 11 Dec 2021 06:35:13: 18000000 INFO @ Sat, 11 Dec 2021 06:35:14: 31000000 INFO @ Sat, 11 Dec 2021 06:35:17: 23000000 INFO @ Sat, 11 Dec 2021 06:35:21: 32000000 INFO @ Sat, 11 Dec 2021 06:35:21: 19000000 INFO @ Sat, 11 Dec 2021 06:35:24: 24000000 INFO @ Sat, 11 Dec 2021 06:35:27: 33000000 INFO @ Sat, 11 Dec 2021 06:35:28: 20000000 INFO @ Sat, 11 Dec 2021 06:35:32: 25000000 INFO @ Sat, 11 Dec 2021 06:35:34: 34000000 INFO @ Sat, 11 Dec 2021 06:35:36: 21000000 INFO @ Sat, 11 Dec 2021 06:35:39: 26000000 INFO @ Sat, 11 Dec 2021 06:35:40: 35000000 INFO @ Sat, 11 Dec 2021 06:35:44: 22000000 INFO @ Sat, 11 Dec 2021 06:35:46: 27000000 INFO @ Sat, 11 Dec 2021 06:35:46: 36000000 INFO @ Sat, 11 Dec 2021 06:35:51: 23000000 INFO @ Sat, 11 Dec 2021 06:35:53: 37000000 INFO @ Sat, 11 Dec 2021 06:35:54: 28000000 INFO @ Sat, 11 Dec 2021 06:35:59: 24000000 INFO @ Sat, 11 Dec 2021 06:35:59: 38000000 INFO @ Sat, 11 Dec 2021 06:36:01: 29000000 INFO @ Sat, 11 Dec 2021 06:36:06: 39000000 INFO @ Sat, 11 Dec 2021 06:36:06: 25000000 INFO @ Sat, 11 Dec 2021 06:36:09: 30000000 INFO @ Sat, 11 Dec 2021 06:36:12: 40000000 INFO @ Sat, 11 Dec 2021 06:36:14: 26000000 INFO @ Sat, 11 Dec 2021 06:36:16: 31000000 INFO @ Sat, 11 Dec 2021 06:36:19: 41000000 INFO @ Sat, 11 Dec 2021 06:36:21: 27000000 INFO @ Sat, 11 Dec 2021 06:36:23: 32000000 INFO @ Sat, 11 Dec 2021 06:36:25: 42000000 INFO @ Sat, 11 Dec 2021 06:36:29: 28000000 INFO @ Sat, 11 Dec 2021 06:36:31: 33000000 INFO @ Sat, 11 Dec 2021 06:36:32: 43000000 INFO @ Sat, 11 Dec 2021 06:36:36: 29000000 INFO @ Sat, 11 Dec 2021 06:36:38: 34000000 INFO @ Sat, 11 Dec 2021 06:36:38: 44000000 INFO @ Sat, 11 Dec 2021 06:36:44: 30000000 INFO @ Sat, 11 Dec 2021 06:36:45: 45000000 INFO @ Sat, 11 Dec 2021 06:36:45: 35000000 INFO @ Sat, 11 Dec 2021 06:36:51: 46000000 INFO @ Sat, 11 Dec 2021 06:36:51: 31000000 INFO @ Sat, 11 Dec 2021 06:36:53: 36000000 INFO @ Sat, 11 Dec 2021 06:36:58: 47000000 INFO @ Sat, 11 Dec 2021 06:36:59: 32000000 INFO @ Sat, 11 Dec 2021 06:37:00: 37000000 INFO @ Sat, 11 Dec 2021 06:37:05: 48000000 INFO @ Sat, 11 Dec 2021 06:37:06: 33000000 INFO @ Sat, 11 Dec 2021 06:37:07: 38000000 INFO @ Sat, 11 Dec 2021 06:37:11: 49000000 INFO @ Sat, 11 Dec 2021 06:37:14: 34000000 INFO @ Sat, 11 Dec 2021 06:37:15: 39000000 INFO @ Sat, 11 Dec 2021 06:37:18: 50000000 INFO @ Sat, 11 Dec 2021 06:37:21: 35000000 INFO @ Sat, 11 Dec 2021 06:37:22: 40000000 INFO @ Sat, 11 Dec 2021 06:37:24: 51000000 INFO @ Sat, 11 Dec 2021 06:37:29: 36000000 INFO @ Sat, 11 Dec 2021 06:37:29: 41000000 INFO @ Sat, 11 Dec 2021 06:37:31: 52000000 INFO @ Sat, 11 Dec 2021 06:37:36: 37000000 INFO @ Sat, 11 Dec 2021 06:37:37: 42000000 INFO @ Sat, 11 Dec 2021 06:37:37: 53000000 INFO @ Sat, 11 Dec 2021 06:37:44: 38000000 INFO @ Sat, 11 Dec 2021 06:37:44: 54000000 INFO @ Sat, 11 Dec 2021 06:37:44: 43000000 INFO @ Sat, 11 Dec 2021 06:37:50: 55000000 INFO @ Sat, 11 Dec 2021 06:37:51: 39000000 INFO @ Sat, 11 Dec 2021 06:37:51: 44000000 INFO @ Sat, 11 Dec 2021 06:37:56: 56000000 INFO @ Sat, 11 Dec 2021 06:37:58: 40000000 INFO @ Sat, 11 Dec 2021 06:37:58: 45000000 INFO @ Sat, 11 Dec 2021 06:38:03: 57000000 INFO @ Sat, 11 Dec 2021 06:38:06: 41000000 INFO @ Sat, 11 Dec 2021 06:38:06: 46000000 INFO @ Sat, 11 Dec 2021 06:38:10: 58000000 INFO @ Sat, 11 Dec 2021 06:38:13: 42000000 INFO @ Sat, 11 Dec 2021 06:38:13: 47000000 INFO @ Sat, 11 Dec 2021 06:38:16: 59000000 INFO @ Sat, 11 Dec 2021 06:38:21: 43000000 INFO @ Sat, 11 Dec 2021 06:38:21: 48000000 INFO @ Sat, 11 Dec 2021 06:38:22: 60000000 INFO @ Sat, 11 Dec 2021 06:38:28: 44000000 INFO @ Sat, 11 Dec 2021 06:38:28: 49000000 INFO @ Sat, 11 Dec 2021 06:38:29: 61000000 INFO @ Sat, 11 Dec 2021 06:38:35: 62000000 INFO @ Sat, 11 Dec 2021 06:38:35: 45000000 INFO @ Sat, 11 Dec 2021 06:38:36: 50000000 INFO @ Sat, 11 Dec 2021 06:38:42: 63000000 INFO @ Sat, 11 Dec 2021 06:38:43: 46000000 INFO @ Sat, 11 Dec 2021 06:38:43: 51000000 INFO @ Sat, 11 Dec 2021 06:38:49: 64000000 INFO @ Sat, 11 Dec 2021 06:38:51: 47000000 INFO @ Sat, 11 Dec 2021 06:38:51: 52000000 INFO @ Sat, 11 Dec 2021 06:38:55: 65000000 INFO @ Sat, 11 Dec 2021 06:38:58: 53000000 INFO @ Sat, 11 Dec 2021 06:38:59: 48000000 INFO @ Sat, 11 Dec 2021 06:39:02: 66000000 INFO @ Sat, 11 Dec 2021 06:39:06: 54000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 11 Dec 2021 06:39:06: 49000000 INFO @ Sat, 11 Dec 2021 06:39:08: 67000000 INFO @ Sat, 11 Dec 2021 06:39:13: 55000000 INFO @ Sat, 11 Dec 2021 06:39:14: 50000000 INFO @ Sat, 11 Dec 2021 06:39:15: 68000000 INFO @ Sat, 11 Dec 2021 06:39:20: 56000000 INFO @ Sat, 11 Dec 2021 06:39:22: 69000000 INFO @ Sat, 11 Dec 2021 06:39:22: 51000000 INFO @ Sat, 11 Dec 2021 06:39:27: 57000000 INFO @ Sat, 11 Dec 2021 06:39:28: 70000000 INFO @ Sat, 11 Dec 2021 06:39:30: 52000000 INFO @ Sat, 11 Dec 2021 06:39:35: 58000000 INFO @ Sat, 11 Dec 2021 06:39:35: 71000000 INFO @ Sat, 11 Dec 2021 06:39:37: 53000000 INFO @ Sat, 11 Dec 2021 06:39:42: 72000000 INFO @ Sat, 11 Dec 2021 06:39:42: 59000000 INFO @ Sat, 11 Dec 2021 06:39:45: 54000000 INFO @ Sat, 11 Dec 2021 06:39:48: 73000000 INFO @ Sat, 11 Dec 2021 06:39:50: 60000000 INFO @ Sat, 11 Dec 2021 06:39:52: 55000000 INFO @ Sat, 11 Dec 2021 06:39:55: 74000000 INFO @ Sat, 11 Dec 2021 06:39:57: 61000000 INFO @ Sat, 11 Dec 2021 06:40:00: 56000000 INFO @ Sat, 11 Dec 2021 06:40:02: 75000000 INFO @ Sat, 11 Dec 2021 06:40:04: 62000000 INFO @ Sat, 11 Dec 2021 06:40:07: 57000000 INFO @ Sat, 11 Dec 2021 06:40:08: 76000000 INFO @ Sat, 11 Dec 2021 06:40:12: 63000000 INFO @ Sat, 11 Dec 2021 06:40:15: 58000000 INFO @ Sat, 11 Dec 2021 06:40:15: 77000000 INFO @ Sat, 11 Dec 2021 06:40:19: 64000000 INFO @ Sat, 11 Dec 2021 06:40:21: #1 tag size is determined as 118 bps INFO @ Sat, 11 Dec 2021 06:40:21: #1 tag size = 118 INFO @ Sat, 11 Dec 2021 06:40:21: #1 total tags in treatment: 31507036 INFO @ Sat, 11 Dec 2021 06:40:21: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 06:40:21: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 06:40:22: #1 tags after filtering in treatment: 23529174 INFO @ Sat, 11 Dec 2021 06:40:22: #1 Redundant rate of treatment: 0.25 INFO @ Sat, 11 Dec 2021 06:40:22: #1 finished! INFO @ Sat, 11 Dec 2021 06:40:22: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 06:40:22: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 06:40:22: 59000000 INFO @ Sat, 11 Dec 2021 06:40:24: #2 number of paired peaks: 467 WARNING @ Sat, 11 Dec 2021 06:40:24: Fewer paired peaks (467) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 467 pairs to build model! INFO @ Sat, 11 Dec 2021 06:40:24: start model_add_line... INFO @ Sat, 11 Dec 2021 06:40:24: start X-correlation... INFO @ Sat, 11 Dec 2021 06:40:24: end of X-cor INFO @ Sat, 11 Dec 2021 06:40:24: #2 finished! INFO @ Sat, 11 Dec 2021 06:40:24: #2 predicted fragment length is 123 bps INFO @ Sat, 11 Dec 2021 06:40:24: #2 alternative fragment length(s) may be 123 bps INFO @ Sat, 11 Dec 2021 06:40:24: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/ERX3978791/ERX3978791.05_model.r WARNING @ Sat, 11 Dec 2021 06:40:24: #2 Since the d (123) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Dec 2021 06:40:24: #2 You may need to consider one of the other alternative d(s): 123 WARNING @ Sat, 11 Dec 2021 06:40:24: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Dec 2021 06:40:24: #3 Call peaks... INFO @ Sat, 11 Dec 2021 06:40:24: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 06:40:27: 65000000 INFO @ Sat, 11 Dec 2021 06:40:30: 60000000 INFO @ Sat, 11 Dec 2021 06:40:34: 66000000 INFO @ Sat, 11 Dec 2021 06:40:37: 61000000 BigWig に変換しました。 INFO @ Sat, 11 Dec 2021 06:40:42: 67000000 INFO @ Sat, 11 Dec 2021 06:40:45: 62000000 INFO @ Sat, 11 Dec 2021 06:40:49: 68000000 INFO @ Sat, 11 Dec 2021 06:40:53: 63000000 INFO @ Sat, 11 Dec 2021 06:40:57: 69000000 INFO @ Sat, 11 Dec 2021 06:41:00: 64000000 INFO @ Sat, 11 Dec 2021 06:41:04: 70000000 INFO @ Sat, 11 Dec 2021 06:41:08: 65000000 INFO @ Sat, 11 Dec 2021 06:41:11: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 06:41:12: 71000000 INFO @ Sat, 11 Dec 2021 06:41:16: 66000000 INFO @ Sat, 11 Dec 2021 06:41:19: 72000000 INFO @ Sat, 11 Dec 2021 06:41:24: 67000000 INFO @ Sat, 11 Dec 2021 06:41:27: 73000000 INFO @ Sat, 11 Dec 2021 06:41:32: 68000000 INFO @ Sat, 11 Dec 2021 06:41:34: 74000000 INFO @ Sat, 11 Dec 2021 06:41:35: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/ERX3978791/ERX3978791.05_peaks.xls INFO @ Sat, 11 Dec 2021 06:41:35: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/ERX3978791/ERX3978791.05_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 06:41:35: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/ERX3978791/ERX3978791.05_summits.bed INFO @ Sat, 11 Dec 2021 06:41:35: Done! pass1 - making usageList (15 chroms): 3 millis pass2 - checking and writing primary data (15640 records, 4 fields): 15 millis CompletedMACS2peakCalling INFO @ Sat, 11 Dec 2021 06:41:40: 69000000 INFO @ Sat, 11 Dec 2021 06:41:42: 75000000 INFO @ Sat, 11 Dec 2021 06:41:47: 70000000 INFO @ Sat, 11 Dec 2021 06:41:49: 76000000 INFO @ Sat, 11 Dec 2021 06:41:55: 71000000 INFO @ Sat, 11 Dec 2021 06:41:57: 77000000 INFO @ Sat, 11 Dec 2021 06:42:03: 72000000 INFO @ Sat, 11 Dec 2021 06:42:04: #1 tag size is determined as 118 bps INFO @ Sat, 11 Dec 2021 06:42:04: #1 tag size = 118 INFO @ Sat, 11 Dec 2021 06:42:04: #1 total tags in treatment: 31507036 INFO @ Sat, 11 Dec 2021 06:42:04: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 06:42:04: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 06:42:05: #1 tags after filtering in treatment: 23529174 INFO @ Sat, 11 Dec 2021 06:42:05: #1 Redundant rate of treatment: 0.25 INFO @ Sat, 11 Dec 2021 06:42:05: #1 finished! INFO @ Sat, 11 Dec 2021 06:42:05: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 06:42:05: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 06:42:07: #2 number of paired peaks: 467 WARNING @ Sat, 11 Dec 2021 06:42:07: Fewer paired peaks (467) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 467 pairs to build model! INFO @ Sat, 11 Dec 2021 06:42:07: start model_add_line... INFO @ Sat, 11 Dec 2021 06:42:07: start X-correlation... INFO @ Sat, 11 Dec 2021 06:42:07: end of X-cor INFO @ Sat, 11 Dec 2021 06:42:07: #2 finished! INFO @ Sat, 11 Dec 2021 06:42:07: #2 predicted fragment length is 123 bps INFO @ Sat, 11 Dec 2021 06:42:07: #2 alternative fragment length(s) may be 123 bps INFO @ Sat, 11 Dec 2021 06:42:07: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/ERX3978791/ERX3978791.10_model.r WARNING @ Sat, 11 Dec 2021 06:42:07: #2 Since the d (123) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Dec 2021 06:42:07: #2 You may need to consider one of the other alternative d(s): 123 WARNING @ Sat, 11 Dec 2021 06:42:07: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Dec 2021 06:42:07: #3 Call peaks... INFO @ Sat, 11 Dec 2021 06:42:07: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 06:42:11: 73000000 INFO @ Sat, 11 Dec 2021 06:42:18: 74000000 INFO @ Sat, 11 Dec 2021 06:42:26: 75000000 INFO @ Sat, 11 Dec 2021 06:42:33: 76000000 INFO @ Sat, 11 Dec 2021 06:42:41: 77000000 INFO @ Sat, 11 Dec 2021 06:42:49: #1 tag size is determined as 118 bps INFO @ Sat, 11 Dec 2021 06:42:49: #1 tag size = 118 INFO @ Sat, 11 Dec 2021 06:42:49: #1 total tags in treatment: 31507036 INFO @ Sat, 11 Dec 2021 06:42:49: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 06:42:49: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 06:42:49: #1 tags after filtering in treatment: 23529174 INFO @ Sat, 11 Dec 2021 06:42:49: #1 Redundant rate of treatment: 0.25 INFO @ Sat, 11 Dec 2021 06:42:49: #1 finished! INFO @ Sat, 11 Dec 2021 06:42:49: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 06:42:49: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 06:42:51: #2 number of paired peaks: 467 WARNING @ Sat, 11 Dec 2021 06:42:51: Fewer paired peaks (467) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 467 pairs to build model! INFO @ Sat, 11 Dec 2021 06:42:51: start model_add_line... INFO @ Sat, 11 Dec 2021 06:42:51: start X-correlation... INFO @ Sat, 11 Dec 2021 06:42:51: end of X-cor INFO @ Sat, 11 Dec 2021 06:42:51: #2 finished! INFO @ Sat, 11 Dec 2021 06:42:51: #2 predicted fragment length is 123 bps INFO @ Sat, 11 Dec 2021 06:42:51: #2 alternative fragment length(s) may be 123 bps INFO @ Sat, 11 Dec 2021 06:42:51: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/ERX3978791/ERX3978791.20_model.r WARNING @ Sat, 11 Dec 2021 06:42:51: #2 Since the d (123) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Dec 2021 06:42:51: #2 You may need to consider one of the other alternative d(s): 123 WARNING @ Sat, 11 Dec 2021 06:42:51: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Dec 2021 06:42:51: #3 Call peaks... INFO @ Sat, 11 Dec 2021 06:42:51: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 06:42:53: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 06:43:17: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/ERX3978791/ERX3978791.10_peaks.xls INFO @ Sat, 11 Dec 2021 06:43:17: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/ERX3978791/ERX3978791.10_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 06:43:17: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/ERX3978791/ERX3978791.10_summits.bed INFO @ Sat, 11 Dec 2021 06:43:17: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (10651 records, 4 fields): 11 millis CompletedMACS2peakCalling INFO @ Sat, 11 Dec 2021 06:43:37: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 06:44:00: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/ERX3978791/ERX3978791.20_peaks.xls INFO @ Sat, 11 Dec 2021 06:44:00: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/ERX3978791/ERX3978791.20_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 06:44:00: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/ERX3978791/ERX3978791.20_summits.bed INFO @ Sat, 11 Dec 2021 06:44:00: Done! pass1 - making usageList (14 chroms): 1 millis pass2 - checking and writing primary data (5301 records, 4 fields): 186 millis CompletedMACS2peakCalling