Job ID = 14157902 SRX = SRX8948255 Genome = ce10 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 43080794 spots for SRR12453809/SRR12453809.sra Written 43080794 spots for SRR12453809/SRR12453809.sra fastq に変換しました。 bowtie でマッピング中... Your job 14158160 ("srTce11") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:30:29 43080794 reads; of these: 43080794 (100.00%) were paired; of these: 14298805 (33.19%) aligned concordantly 0 times 24812778 (57.60%) aligned concordantly exactly 1 time 3969211 (9.21%) aligned concordantly >1 times ---- 14298805 pairs aligned concordantly 0 times; of these: 66746 (0.47%) aligned discordantly 1 time ---- 14232059 pairs aligned 0 times concordantly or discordantly; of these: 28464118 mates make up the pairs; of these: 28283324 (99.36%) aligned 0 times 124888 (0.44%) aligned exactly 1 time 55906 (0.20%) aligned >1 times 67.17% overall alignment rate Time searching: 00:30:29 Overall time: 00:30:29 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 24 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 779517 / 28276177 = 0.0276 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Wed, 08 Dec 2021 13:16:01: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX8948255/SRX8948255.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX8948255/SRX8948255.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX8948255/SRX8948255.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX8948255/SRX8948255.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 08 Dec 2021 13:16:01: #1 read tag files... INFO @ Wed, 08 Dec 2021 13:16:01: #1 read treatment tags... INFO @ Wed, 08 Dec 2021 13:16:06: 1000000 INFO @ Wed, 08 Dec 2021 13:16:12: 2000000 INFO @ Wed, 08 Dec 2021 13:16:17: 3000000 INFO @ Wed, 08 Dec 2021 13:16:22: 4000000 INFO @ Wed, 08 Dec 2021 13:16:27: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Wed, 08 Dec 2021 13:16:31: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX8948255/SRX8948255.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX8948255/SRX8948255.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX8948255/SRX8948255.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX8948255/SRX8948255.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 08 Dec 2021 13:16:31: #1 read tag files... INFO @ Wed, 08 Dec 2021 13:16:31: #1 read treatment tags... INFO @ Wed, 08 Dec 2021 13:16:33: 6000000 INFO @ Wed, 08 Dec 2021 13:16:38: 1000000 INFO @ Wed, 08 Dec 2021 13:16:39: 7000000 INFO @ Wed, 08 Dec 2021 13:16:45: 2000000 INFO @ Wed, 08 Dec 2021 13:16:45: 8000000 INFO @ Wed, 08 Dec 2021 13:16:51: 9000000 INFO @ Wed, 08 Dec 2021 13:16:51: 3000000 INFO @ Wed, 08 Dec 2021 13:16:57: 10000000 INFO @ Wed, 08 Dec 2021 13:16:58: 4000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Wed, 08 Dec 2021 13:17:01: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX8948255/SRX8948255.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX8948255/SRX8948255.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX8948255/SRX8948255.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX8948255/SRX8948255.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 08 Dec 2021 13:17:01: #1 read tag files... INFO @ Wed, 08 Dec 2021 13:17:01: #1 read treatment tags... INFO @ Wed, 08 Dec 2021 13:17:03: 11000000 INFO @ Wed, 08 Dec 2021 13:17:05: 5000000 INFO @ Wed, 08 Dec 2021 13:17:07: 1000000 INFO @ Wed, 08 Dec 2021 13:17:09: 12000000 INFO @ Wed, 08 Dec 2021 13:17:11: 6000000 INFO @ Wed, 08 Dec 2021 13:17:13: 2000000 INFO @ Wed, 08 Dec 2021 13:17:15: 13000000 INFO @ Wed, 08 Dec 2021 13:17:18: 7000000 INFO @ Wed, 08 Dec 2021 13:17:19: 3000000 INFO @ Wed, 08 Dec 2021 13:17:21: 14000000 INFO @ Wed, 08 Dec 2021 13:17:25: 8000000 INFO @ Wed, 08 Dec 2021 13:17:25: 4000000 INFO @ Wed, 08 Dec 2021 13:17:28: 15000000 INFO @ Wed, 08 Dec 2021 13:17:31: 5000000 INFO @ Wed, 08 Dec 2021 13:17:32: 9000000 INFO @ Wed, 08 Dec 2021 13:17:34: 16000000 INFO @ Wed, 08 Dec 2021 13:17:37: 6000000 INFO @ Wed, 08 Dec 2021 13:17:38: 10000000 INFO @ Wed, 08 Dec 2021 13:17:40: 17000000 INFO @ Wed, 08 Dec 2021 13:17:43: 7000000 INFO @ Wed, 08 Dec 2021 13:17:45: 11000000 INFO @ Wed, 08 Dec 2021 13:17:46: 18000000 INFO @ Wed, 08 Dec 2021 13:17:49: 8000000 INFO @ Wed, 08 Dec 2021 13:17:52: 12000000 INFO @ Wed, 08 Dec 2021 13:17:52: 19000000 INFO @ Wed, 08 Dec 2021 13:17:55: 9000000 INFO @ Wed, 08 Dec 2021 13:17:58: 20000000 INFO @ Wed, 08 Dec 2021 13:17:58: 13000000 INFO @ Wed, 08 Dec 2021 13:18:01: 10000000 INFO @ Wed, 08 Dec 2021 13:18:04: 21000000 INFO @ Wed, 08 Dec 2021 13:18:05: 14000000 INFO @ Wed, 08 Dec 2021 13:18:07: 11000000 INFO @ Wed, 08 Dec 2021 13:18:10: 22000000 INFO @ Wed, 08 Dec 2021 13:18:12: 15000000 INFO @ Wed, 08 Dec 2021 13:18:13: 12000000 INFO @ Wed, 08 Dec 2021 13:18:16: 23000000 INFO @ Wed, 08 Dec 2021 13:18:18: 16000000 INFO @ Wed, 08 Dec 2021 13:18:19: 13000000 INFO @ Wed, 08 Dec 2021 13:18:22: 24000000 INFO @ Wed, 08 Dec 2021 13:18:25: 17000000 INFO @ Wed, 08 Dec 2021 13:18:25: 14000000 INFO @ Wed, 08 Dec 2021 13:18:28: 25000000 INFO @ Wed, 08 Dec 2021 13:18:31: 15000000 INFO @ Wed, 08 Dec 2021 13:18:32: 18000000 INFO @ Wed, 08 Dec 2021 13:18:35: 26000000 INFO @ Wed, 08 Dec 2021 13:18:37: 16000000 INFO @ Wed, 08 Dec 2021 13:18:38: 19000000 INFO @ Wed, 08 Dec 2021 13:18:41: 27000000 INFO @ Wed, 08 Dec 2021 13:18:43: 17000000 INFO @ Wed, 08 Dec 2021 13:18:45: 20000000 INFO @ Wed, 08 Dec 2021 13:18:47: 28000000 INFO @ Wed, 08 Dec 2021 13:18:49: 18000000 INFO @ Wed, 08 Dec 2021 13:18:52: 21000000 INFO @ Wed, 08 Dec 2021 13:18:53: 29000000 INFO @ Wed, 08 Dec 2021 13:18:55: 19000000 INFO @ Wed, 08 Dec 2021 13:18:58: 22000000 INFO @ Wed, 08 Dec 2021 13:18:59: 30000000 INFO @ Wed, 08 Dec 2021 13:19:01: 20000000 INFO @ Wed, 08 Dec 2021 13:19:05: 31000000 INFO @ Wed, 08 Dec 2021 13:19:05: 23000000 INFO @ Wed, 08 Dec 2021 13:19:07: 21000000 INFO @ Wed, 08 Dec 2021 13:19:11: 32000000 INFO @ Wed, 08 Dec 2021 13:19:12: 24000000 INFO @ Wed, 08 Dec 2021 13:19:13: 22000000 INFO @ Wed, 08 Dec 2021 13:19:17: 33000000 INFO @ Wed, 08 Dec 2021 13:19:18: 25000000 INFO @ Wed, 08 Dec 2021 13:19:19: 23000000 INFO @ Wed, 08 Dec 2021 13:19:23: 34000000 INFO @ Wed, 08 Dec 2021 13:19:25: 26000000 INFO @ Wed, 08 Dec 2021 13:19:25: 24000000 INFO @ Wed, 08 Dec 2021 13:19:29: 35000000 INFO @ Wed, 08 Dec 2021 13:19:31: 25000000 INFO @ Wed, 08 Dec 2021 13:19:31: 27000000 INFO @ Wed, 08 Dec 2021 13:19:35: 36000000 INFO @ Wed, 08 Dec 2021 13:19:37: 26000000 INFO @ Wed, 08 Dec 2021 13:19:38: 28000000 INFO @ Wed, 08 Dec 2021 13:19:41: 37000000 INFO @ Wed, 08 Dec 2021 13:19:43: 27000000 INFO @ Wed, 08 Dec 2021 13:19:45: 29000000 INFO @ Wed, 08 Dec 2021 13:19:47: 38000000 INFO @ Wed, 08 Dec 2021 13:19:49: 28000000 INFO @ Wed, 08 Dec 2021 13:19:51: 30000000 INFO @ Wed, 08 Dec 2021 13:19:53: 39000000 INFO @ Wed, 08 Dec 2021 13:19:55: 29000000 INFO @ Wed, 08 Dec 2021 13:19:58: 31000000 INFO @ Wed, 08 Dec 2021 13:19:59: 40000000 INFO @ Wed, 08 Dec 2021 13:20:01: 30000000 INFO @ Wed, 08 Dec 2021 13:20:04: 32000000 INFO @ Wed, 08 Dec 2021 13:20:05: 41000000 INFO @ Wed, 08 Dec 2021 13:20:06: 31000000 INFO @ Wed, 08 Dec 2021 13:20:11: 33000000 INFO @ Wed, 08 Dec 2021 13:20:11: 42000000 INFO @ Wed, 08 Dec 2021 13:20:12: 32000000 INFO @ Wed, 08 Dec 2021 13:20:17: 43000000 INFO @ Wed, 08 Dec 2021 13:20:18: 34000000 INFO @ Wed, 08 Dec 2021 13:20:18: 33000000 INFO @ Wed, 08 Dec 2021 13:20:23: 44000000 INFO @ Wed, 08 Dec 2021 13:20:24: 34000000 INFO @ Wed, 08 Dec 2021 13:20:24: 35000000 INFO @ Wed, 08 Dec 2021 13:20:29: 45000000 INFO @ Wed, 08 Dec 2021 13:20:30: 35000000 INFO @ Wed, 08 Dec 2021 13:20:31: 36000000 INFO @ Wed, 08 Dec 2021 13:20:36: 46000000 INFO @ Wed, 08 Dec 2021 13:20:36: 36000000 INFO @ Wed, 08 Dec 2021 13:20:37: 37000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Wed, 08 Dec 2021 13:20:42: 37000000 INFO @ Wed, 08 Dec 2021 13:20:42: 47000000 INFO @ Wed, 08 Dec 2021 13:20:44: 38000000 INFO @ Wed, 08 Dec 2021 13:20:47: 38000000 INFO @ Wed, 08 Dec 2021 13:20:48: 48000000 INFO @ Wed, 08 Dec 2021 13:20:51: 39000000 INFO @ Wed, 08 Dec 2021 13:20:53: 39000000 INFO @ Wed, 08 Dec 2021 13:20:54: 49000000 INFO @ Wed, 08 Dec 2021 13:20:57: 40000000 INFO @ Wed, 08 Dec 2021 13:20:59: 40000000 INFO @ Wed, 08 Dec 2021 13:21:00: 50000000 INFO @ Wed, 08 Dec 2021 13:21:04: 41000000 INFO @ Wed, 08 Dec 2021 13:21:05: 41000000 INFO @ Wed, 08 Dec 2021 13:21:06: 51000000 INFO @ Wed, 08 Dec 2021 13:21:10: 42000000 INFO @ Wed, 08 Dec 2021 13:21:11: 42000000 INFO @ Wed, 08 Dec 2021 13:21:12: 52000000 INFO @ Wed, 08 Dec 2021 13:21:17: 43000000 INFO @ Wed, 08 Dec 2021 13:21:18: 43000000 INFO @ Wed, 08 Dec 2021 13:21:18: 53000000 INFO @ Wed, 08 Dec 2021 13:21:24: 44000000 INFO @ Wed, 08 Dec 2021 13:21:24: 54000000 INFO @ Wed, 08 Dec 2021 13:21:25: 44000000 INFO @ Wed, 08 Dec 2021 13:21:30: 55000000 INFO @ Wed, 08 Dec 2021 13:21:31: 45000000 INFO @ Wed, 08 Dec 2021 13:21:32: 45000000 INFO @ Wed, 08 Dec 2021 13:21:36: 56000000 INFO @ Wed, 08 Dec 2021 13:21:38: 46000000 INFO @ Wed, 08 Dec 2021 13:21:38: #1 tag size is determined as 74 bps INFO @ Wed, 08 Dec 2021 13:21:38: #1 tag size = 74 INFO @ Wed, 08 Dec 2021 13:21:38: #1 total tags in treatment: 28003043 INFO @ Wed, 08 Dec 2021 13:21:38: #1 user defined the maximum tags... INFO @ Wed, 08 Dec 2021 13:21:38: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 08 Dec 2021 13:21:39: #1 tags after filtering in treatment: 24573102 INFO @ Wed, 08 Dec 2021 13:21:39: #1 Redundant rate of treatment: 0.12 INFO @ Wed, 08 Dec 2021 13:21:39: #1 finished! INFO @ Wed, 08 Dec 2021 13:21:39: #2 Build Peak Model... INFO @ Wed, 08 Dec 2021 13:21:39: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 08 Dec 2021 13:21:39: 46000000 INFO @ Wed, 08 Dec 2021 13:21:40: #2 number of paired peaks: 112 WARNING @ Wed, 08 Dec 2021 13:21:40: Fewer paired peaks (112) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 112 pairs to build model! INFO @ Wed, 08 Dec 2021 13:21:40: start model_add_line... INFO @ Wed, 08 Dec 2021 13:21:40: start X-correlation... INFO @ Wed, 08 Dec 2021 13:21:40: end of X-cor INFO @ Wed, 08 Dec 2021 13:21:40: #2 finished! INFO @ Wed, 08 Dec 2021 13:21:40: #2 predicted fragment length is 116 bps INFO @ Wed, 08 Dec 2021 13:21:40: #2 alternative fragment length(s) may be 2,76,98,116,158,208 bps INFO @ Wed, 08 Dec 2021 13:21:40: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX8948255/SRX8948255.05_model.r WARNING @ Wed, 08 Dec 2021 13:21:40: #2 Since the d (116) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Wed, 08 Dec 2021 13:21:40: #2 You may need to consider one of the other alternative d(s): 2,76,98,116,158,208 WARNING @ Wed, 08 Dec 2021 13:21:40: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Wed, 08 Dec 2021 13:21:40: #3 Call peaks... INFO @ Wed, 08 Dec 2021 13:21:40: #3 Pre-compute pvalue-qvalue table... INFO @ Wed, 08 Dec 2021 13:21:45: 47000000 INFO @ Wed, 08 Dec 2021 13:21:46: 47000000 INFO @ Wed, 08 Dec 2021 13:21:52: 48000000 INFO @ Wed, 08 Dec 2021 13:21:52: 48000000 BigWig に変換しました。 INFO @ Wed, 08 Dec 2021 13:21:58: 49000000 INFO @ Wed, 08 Dec 2021 13:21:59: 49000000 INFO @ Wed, 08 Dec 2021 13:22:05: 50000000 INFO @ Wed, 08 Dec 2021 13:22:06: 50000000 INFO @ Wed, 08 Dec 2021 13:22:12: 51000000 INFO @ Wed, 08 Dec 2021 13:22:12: 51000000 INFO @ Wed, 08 Dec 2021 13:22:18: 52000000 INFO @ Wed, 08 Dec 2021 13:22:18: #3 Call peaks for each chromosome... INFO @ Wed, 08 Dec 2021 13:22:19: 52000000 INFO @ Wed, 08 Dec 2021 13:22:25: 53000000 INFO @ Wed, 08 Dec 2021 13:22:25: 53000000 INFO @ Wed, 08 Dec 2021 13:22:31: 54000000 INFO @ Wed, 08 Dec 2021 13:22:32: 54000000 INFO @ Wed, 08 Dec 2021 13:22:35: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX8948255/SRX8948255.05_peaks.xls INFO @ Wed, 08 Dec 2021 13:22:35: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX8948255/SRX8948255.05_peaks.narrowPeak INFO @ Wed, 08 Dec 2021 13:22:35: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX8948255/SRX8948255.05_summits.bed INFO @ Wed, 08 Dec 2021 13:22:35: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (454 records, 4 fields): 1 millis CompletedMACS2peakCalling INFO @ Wed, 08 Dec 2021 13:22:38: 55000000 INFO @ Wed, 08 Dec 2021 13:22:39: 55000000 INFO @ Wed, 08 Dec 2021 13:22:45: 56000000 INFO @ Wed, 08 Dec 2021 13:22:45: 56000000 INFO @ Wed, 08 Dec 2021 13:22:47: #1 tag size is determined as 74 bps INFO @ Wed, 08 Dec 2021 13:22:47: #1 tag size = 74 INFO @ Wed, 08 Dec 2021 13:22:47: #1 total tags in treatment: 28003043 INFO @ Wed, 08 Dec 2021 13:22:47: #1 user defined the maximum tags... INFO @ Wed, 08 Dec 2021 13:22:47: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 08 Dec 2021 13:22:47: #1 tags after filtering in treatment: 24573102 INFO @ Wed, 08 Dec 2021 13:22:47: #1 Redundant rate of treatment: 0.12 INFO @ Wed, 08 Dec 2021 13:22:47: #1 finished! INFO @ Wed, 08 Dec 2021 13:22:47: #2 Build Peak Model... INFO @ Wed, 08 Dec 2021 13:22:47: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 08 Dec 2021 13:22:47: #1 tag size is determined as 74 bps INFO @ Wed, 08 Dec 2021 13:22:47: #1 tag size = 74 INFO @ Wed, 08 Dec 2021 13:22:47: #1 total tags in treatment: 28003043 INFO @ Wed, 08 Dec 2021 13:22:47: #1 user defined the maximum tags... INFO @ Wed, 08 Dec 2021 13:22:47: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 08 Dec 2021 13:22:48: #1 tags after filtering in treatment: 24573102 INFO @ Wed, 08 Dec 2021 13:22:48: #1 Redundant rate of treatment: 0.12 INFO @ Wed, 08 Dec 2021 13:22:48: #1 finished! INFO @ Wed, 08 Dec 2021 13:22:48: #2 Build Peak Model... INFO @ Wed, 08 Dec 2021 13:22:48: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 08 Dec 2021 13:22:49: #2 number of paired peaks: 112 WARNING @ Wed, 08 Dec 2021 13:22:49: Fewer paired peaks (112) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 112 pairs to build model! INFO @ Wed, 08 Dec 2021 13:22:49: start model_add_line... INFO @ Wed, 08 Dec 2021 13:22:49: start X-correlation... INFO @ Wed, 08 Dec 2021 13:22:49: end of X-cor INFO @ Wed, 08 Dec 2021 13:22:49: #2 finished! INFO @ Wed, 08 Dec 2021 13:22:49: #2 predicted fragment length is 116 bps INFO @ Wed, 08 Dec 2021 13:22:49: #2 alternative fragment length(s) may be 2,76,98,116,158,208 bps INFO @ Wed, 08 Dec 2021 13:22:49: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX8948255/SRX8948255.10_model.r WARNING @ Wed, 08 Dec 2021 13:22:49: #2 Since the d (116) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Wed, 08 Dec 2021 13:22:49: #2 You may need to consider one of the other alternative d(s): 2,76,98,116,158,208 WARNING @ Wed, 08 Dec 2021 13:22:49: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Wed, 08 Dec 2021 13:22:49: #3 Call peaks... INFO @ Wed, 08 Dec 2021 13:22:49: #3 Pre-compute pvalue-qvalue table... INFO @ Wed, 08 Dec 2021 13:22:49: #2 number of paired peaks: 112 WARNING @ Wed, 08 Dec 2021 13:22:49: Fewer paired peaks (112) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 112 pairs to build model! INFO @ Wed, 08 Dec 2021 13:22:49: start model_add_line... INFO @ Wed, 08 Dec 2021 13:22:50: start X-correlation... INFO @ Wed, 08 Dec 2021 13:22:50: end of X-cor INFO @ Wed, 08 Dec 2021 13:22:50: #2 finished! INFO @ Wed, 08 Dec 2021 13:22:50: #2 predicted fragment length is 116 bps INFO @ Wed, 08 Dec 2021 13:22:50: #2 alternative fragment length(s) may be 2,76,98,116,158,208 bps INFO @ Wed, 08 Dec 2021 13:22:50: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX8948255/SRX8948255.20_model.r WARNING @ Wed, 08 Dec 2021 13:22:50: #2 Since the d (116) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Wed, 08 Dec 2021 13:22:50: #2 You may need to consider one of the other alternative d(s): 2,76,98,116,158,208 WARNING @ Wed, 08 Dec 2021 13:22:50: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Wed, 08 Dec 2021 13:22:50: #3 Call peaks... INFO @ Wed, 08 Dec 2021 13:22:50: #3 Pre-compute pvalue-qvalue table... INFO @ Wed, 08 Dec 2021 13:23:26: #3 Call peaks for each chromosome... INFO @ Wed, 08 Dec 2021 13:23:27: #3 Call peaks for each chromosome... INFO @ Wed, 08 Dec 2021 13:23:43: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX8948255/SRX8948255.20_peaks.xls INFO @ Wed, 08 Dec 2021 13:23:43: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX8948255/SRX8948255.20_peaks.narrowPeak INFO @ Wed, 08 Dec 2021 13:23:43: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX8948255/SRX8948255.20_summits.bed INFO @ Wed, 08 Dec 2021 13:23:43: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (198 records, 4 fields): 1 millis CompletedMACS2peakCalling INFO @ Wed, 08 Dec 2021 13:23:43: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX8948255/SRX8948255.10_peaks.xls INFO @ Wed, 08 Dec 2021 13:23:43: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX8948255/SRX8948255.10_peaks.narrowPeak INFO @ Wed, 08 Dec 2021 13:23:43: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX8948255/SRX8948255.10_summits.bed INFO @ Wed, 08 Dec 2021 13:23:43: Done! pass1 - making usageList (7 chroms): 0 millis pass2 - checking and writing primary data (340 records, 4 fields): 2 millis CompletedMACS2peakCalling