Job ID = 14157899 SRX = SRX8948252 Genome = ce10 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 76493931 spots for SRR12453812/SRR12453812.sra Written 76493931 spots for SRR12453812/SRR12453812.sra fastq に変換しました。 bowtie でマッピング中... Your job 14159362 ("srTce11") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 02:32:48 76493931 reads; of these: 76493931 (100.00%) were paired; of these: 15702998 (20.53%) aligned concordantly 0 times 49811870 (65.12%) aligned concordantly exactly 1 time 10979063 (14.35%) aligned concordantly >1 times ---- 15702998 pairs aligned concordantly 0 times; of these: 7581571 (48.28%) aligned discordantly 1 time ---- 8121427 pairs aligned 0 times concordantly or discordantly; of these: 16242854 mates make up the pairs; of these: 13413961 (82.58%) aligned 0 times 1047928 (6.45%) aligned exactly 1 time 1780965 (10.96%) aligned >1 times 91.23% overall alignment rate Time searching: 02:32:48 Overall time: 02:32:48 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 104 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 23185404 / 68021408 = 0.3409 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Wed, 08 Dec 2021 20:17:02: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX8948252/SRX8948252.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX8948252/SRX8948252.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX8948252/SRX8948252.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX8948252/SRX8948252.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 08 Dec 2021 20:17:02: #1 read tag files... INFO @ Wed, 08 Dec 2021 20:17:02: #1 read treatment tags... INFO @ Wed, 08 Dec 2021 20:17:10: 1000000 INFO @ Wed, 08 Dec 2021 20:17:19: 2000000 INFO @ Wed, 08 Dec 2021 20:17:27: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Wed, 08 Dec 2021 20:17:31: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX8948252/SRX8948252.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX8948252/SRX8948252.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX8948252/SRX8948252.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX8948252/SRX8948252.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 08 Dec 2021 20:17:31: #1 read tag files... INFO @ Wed, 08 Dec 2021 20:17:31: #1 read treatment tags... INFO @ Wed, 08 Dec 2021 20:17:35: 4000000 INFO @ Wed, 08 Dec 2021 20:17:41: 1000000 INFO @ Wed, 08 Dec 2021 20:17:44: 5000000 INFO @ Wed, 08 Dec 2021 20:17:51: 2000000 INFO @ Wed, 08 Dec 2021 20:17:53: 6000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Wed, 08 Dec 2021 20:18:01: 7000000 INFO @ Wed, 08 Dec 2021 20:18:01: 3000000 INFO @ Wed, 08 Dec 2021 20:18:02: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX8948252/SRX8948252.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX8948252/SRX8948252.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX8948252/SRX8948252.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX8948252/SRX8948252.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 08 Dec 2021 20:18:02: #1 read tag files... INFO @ Wed, 08 Dec 2021 20:18:02: #1 read treatment tags... INFO @ Wed, 08 Dec 2021 20:18:09: 8000000 INFO @ Wed, 08 Dec 2021 20:18:10: 4000000 INFO @ Wed, 08 Dec 2021 20:18:11: 1000000 INFO @ Wed, 08 Dec 2021 20:18:17: 9000000 INFO @ Wed, 08 Dec 2021 20:18:19: 5000000 INFO @ Wed, 08 Dec 2021 20:18:21: 2000000 INFO @ Wed, 08 Dec 2021 20:18:26: 10000000 INFO @ Wed, 08 Dec 2021 20:18:27: 6000000 INFO @ Wed, 08 Dec 2021 20:18:31: 3000000 INFO @ Wed, 08 Dec 2021 20:18:34: 11000000 INFO @ Wed, 08 Dec 2021 20:18:35: 7000000 INFO @ Wed, 08 Dec 2021 20:18:40: 4000000 INFO @ Wed, 08 Dec 2021 20:18:42: 12000000 INFO @ Wed, 08 Dec 2021 20:18:43: 8000000 INFO @ Wed, 08 Dec 2021 20:18:48: 5000000 INFO @ Wed, 08 Dec 2021 20:18:51: 13000000 INFO @ Wed, 08 Dec 2021 20:18:52: 9000000 INFO @ Wed, 08 Dec 2021 20:18:56: 6000000 INFO @ Wed, 08 Dec 2021 20:18:59: 14000000 INFO @ Wed, 08 Dec 2021 20:19:00: 10000000 INFO @ Wed, 08 Dec 2021 20:19:04: 7000000 INFO @ Wed, 08 Dec 2021 20:19:07: 15000000 INFO @ Wed, 08 Dec 2021 20:19:08: 11000000 INFO @ Wed, 08 Dec 2021 20:19:13: 8000000 INFO @ Wed, 08 Dec 2021 20:19:15: 16000000 INFO @ Wed, 08 Dec 2021 20:19:17: 12000000 INFO @ Wed, 08 Dec 2021 20:19:21: 9000000 INFO @ Wed, 08 Dec 2021 20:19:24: 17000000 INFO @ Wed, 08 Dec 2021 20:19:25: 13000000 INFO @ Wed, 08 Dec 2021 20:19:29: 10000000 INFO @ Wed, 08 Dec 2021 20:19:32: 18000000 INFO @ Wed, 08 Dec 2021 20:19:33: 14000000 INFO @ Wed, 08 Dec 2021 20:19:38: 11000000 INFO @ Wed, 08 Dec 2021 20:19:40: 19000000 INFO @ Wed, 08 Dec 2021 20:19:42: 15000000 INFO @ Wed, 08 Dec 2021 20:19:46: 12000000 INFO @ Wed, 08 Dec 2021 20:19:49: 20000000 INFO @ Wed, 08 Dec 2021 20:19:50: 16000000 INFO @ Wed, 08 Dec 2021 20:19:54: 13000000 INFO @ Wed, 08 Dec 2021 20:19:57: 21000000 INFO @ Wed, 08 Dec 2021 20:19:58: 17000000 INFO @ Wed, 08 Dec 2021 20:20:02: 14000000 INFO @ Wed, 08 Dec 2021 20:20:05: 22000000 INFO @ Wed, 08 Dec 2021 20:20:06: 18000000 INFO @ Wed, 08 Dec 2021 20:20:11: 15000000 INFO @ Wed, 08 Dec 2021 20:20:13: 23000000 INFO @ Wed, 08 Dec 2021 20:20:14: 19000000 INFO @ Wed, 08 Dec 2021 20:20:19: 16000000 INFO @ Wed, 08 Dec 2021 20:20:22: 24000000 INFO @ Wed, 08 Dec 2021 20:20:23: 20000000 INFO @ Wed, 08 Dec 2021 20:20:27: 17000000 INFO @ Wed, 08 Dec 2021 20:20:30: 25000000 INFO @ Wed, 08 Dec 2021 20:20:31: 21000000 INFO @ Wed, 08 Dec 2021 20:20:35: 18000000 INFO @ Wed, 08 Dec 2021 20:20:38: 26000000 INFO @ Wed, 08 Dec 2021 20:20:39: 22000000 INFO @ Wed, 08 Dec 2021 20:20:44: 19000000 INFO @ Wed, 08 Dec 2021 20:20:47: 27000000 INFO @ Wed, 08 Dec 2021 20:20:48: 23000000 INFO @ Wed, 08 Dec 2021 20:20:52: 20000000 INFO @ Wed, 08 Dec 2021 20:20:55: 28000000 INFO @ Wed, 08 Dec 2021 20:20:56: 24000000 INFO @ Wed, 08 Dec 2021 20:21:00: 21000000 INFO @ Wed, 08 Dec 2021 20:21:03: 29000000 INFO @ Wed, 08 Dec 2021 20:21:04: 25000000 INFO @ Wed, 08 Dec 2021 20:21:08: 22000000 INFO @ Wed, 08 Dec 2021 20:21:11: 30000000 INFO @ Wed, 08 Dec 2021 20:21:12: 26000000 INFO @ Wed, 08 Dec 2021 20:21:17: 23000000 INFO @ Wed, 08 Dec 2021 20:21:20: 31000000 INFO @ Wed, 08 Dec 2021 20:21:21: 27000000 INFO @ Wed, 08 Dec 2021 20:21:25: 24000000 INFO @ Wed, 08 Dec 2021 20:21:28: 32000000 INFO @ Wed, 08 Dec 2021 20:21:29: 28000000 INFO @ Wed, 08 Dec 2021 20:21:33: 25000000 INFO @ Wed, 08 Dec 2021 20:21:36: 33000000 INFO @ Wed, 08 Dec 2021 20:21:37: 29000000 INFO @ Wed, 08 Dec 2021 20:21:41: 26000000 INFO @ Wed, 08 Dec 2021 20:21:45: 34000000 INFO @ Wed, 08 Dec 2021 20:21:46: 30000000 INFO @ Wed, 08 Dec 2021 20:21:50: 27000000 INFO @ Wed, 08 Dec 2021 20:21:54: 35000000 INFO @ Wed, 08 Dec 2021 20:21:55: 31000000 INFO @ Wed, 08 Dec 2021 20:21:59: 28000000 INFO @ Wed, 08 Dec 2021 20:22:02: 36000000 INFO @ Wed, 08 Dec 2021 20:22:04: 32000000 INFO @ Wed, 08 Dec 2021 20:22:08: 29000000 INFO @ Wed, 08 Dec 2021 20:22:11: 37000000 INFO @ Wed, 08 Dec 2021 20:22:12: 33000000 INFO @ Wed, 08 Dec 2021 20:22:16: 30000000 INFO @ Wed, 08 Dec 2021 20:22:20: 38000000 INFO @ Wed, 08 Dec 2021 20:22:21: 34000000 INFO @ Wed, 08 Dec 2021 20:22:25: 31000000 INFO @ Wed, 08 Dec 2021 20:22:28: 39000000 INFO @ Wed, 08 Dec 2021 20:22:29: 35000000 INFO @ Wed, 08 Dec 2021 20:22:33: 32000000 INFO @ Wed, 08 Dec 2021 20:22:36: 40000000 INFO @ Wed, 08 Dec 2021 20:22:38: 36000000 INFO @ Wed, 08 Dec 2021 20:22:42: 33000000 INFO @ Wed, 08 Dec 2021 20:22:45: 41000000 INFO @ Wed, 08 Dec 2021 20:22:46: 37000000 INFO @ Wed, 08 Dec 2021 20:22:50: 34000000 INFO @ Wed, 08 Dec 2021 20:22:53: 42000000 INFO @ Wed, 08 Dec 2021 20:22:55: 38000000 INFO @ Wed, 08 Dec 2021 20:22:58: 35000000 INFO @ Wed, 08 Dec 2021 20:23:02: 43000000 INFO @ Wed, 08 Dec 2021 20:23:03: 39000000 INFO @ Wed, 08 Dec 2021 20:23:07: 36000000 INFO @ Wed, 08 Dec 2021 20:23:10: 44000000 INFO @ Wed, 08 Dec 2021 20:23:12: 40000000 INFO @ Wed, 08 Dec 2021 20:23:16: 37000000 INFO @ Wed, 08 Dec 2021 20:23:19: 45000000 INFO @ Wed, 08 Dec 2021 20:23:21: 41000000 INFO @ Wed, 08 Dec 2021 20:23:24: 38000000 INFO @ Wed, 08 Dec 2021 20:23:27: 46000000 INFO @ Wed, 08 Dec 2021 20:23:30: 42000000 INFO @ Wed, 08 Dec 2021 20:23:33: 39000000 INFO @ Wed, 08 Dec 2021 20:23:36: 47000000 INFO @ Wed, 08 Dec 2021 20:23:39: 43000000 INFO @ Wed, 08 Dec 2021 20:23:42: 40000000 INFO @ Wed, 08 Dec 2021 20:23:45: 48000000 INFO @ Wed, 08 Dec 2021 20:23:48: 44000000 INFO @ Wed, 08 Dec 2021 20:23:51: 41000000 INFO @ Wed, 08 Dec 2021 20:23:54: 49000000 INFO @ Wed, 08 Dec 2021 20:23:56: 45000000 INFO @ Wed, 08 Dec 2021 20:23:59: 42000000 INFO @ Wed, 08 Dec 2021 20:24:02: 50000000 INFO @ Wed, 08 Dec 2021 20:24:05: 46000000 INFO @ Wed, 08 Dec 2021 20:24:08: 43000000 INFO @ Wed, 08 Dec 2021 20:24:11: 51000000 INFO @ Wed, 08 Dec 2021 20:24:13: 47000000 INFO @ Wed, 08 Dec 2021 20:24:16: 44000000 INFO @ Wed, 08 Dec 2021 20:24:19: 52000000 INFO @ Wed, 08 Dec 2021 20:24:22: 48000000 INFO @ Wed, 08 Dec 2021 20:24:25: 45000000 INFO @ Wed, 08 Dec 2021 20:24:28: 53000000 INFO @ Wed, 08 Dec 2021 20:24:30: 49000000 INFO @ Wed, 08 Dec 2021 20:24:33: 46000000 INFO @ Wed, 08 Dec 2021 20:24:36: 54000000 INFO @ Wed, 08 Dec 2021 20:24:39: 50000000 INFO @ Wed, 08 Dec 2021 20:24:42: 47000000 INFO @ Wed, 08 Dec 2021 20:24:45: 55000000 INFO @ Wed, 08 Dec 2021 20:24:47: 51000000 INFO @ Wed, 08 Dec 2021 20:24:50: 48000000 INFO @ Wed, 08 Dec 2021 20:24:53: 56000000 INFO @ Wed, 08 Dec 2021 20:24:56: 52000000 INFO @ Wed, 08 Dec 2021 20:24:59: 49000000 INFO @ Wed, 08 Dec 2021 20:25:02: 57000000 INFO @ Wed, 08 Dec 2021 20:25:04: 53000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Wed, 08 Dec 2021 20:25:07: 50000000 INFO @ Wed, 08 Dec 2021 20:25:10: 58000000 INFO @ Wed, 08 Dec 2021 20:25:13: 54000000 INFO @ Wed, 08 Dec 2021 20:25:16: 51000000 INFO @ Wed, 08 Dec 2021 20:25:19: 59000000 INFO @ Wed, 08 Dec 2021 20:25:21: 55000000 INFO @ Wed, 08 Dec 2021 20:25:25: 52000000 INFO @ Wed, 08 Dec 2021 20:25:28: 60000000 INFO @ Wed, 08 Dec 2021 20:25:30: 56000000 INFO @ Wed, 08 Dec 2021 20:25:33: 53000000 INFO @ Wed, 08 Dec 2021 20:25:36: 61000000 INFO @ Wed, 08 Dec 2021 20:25:39: 57000000 INFO @ Wed, 08 Dec 2021 20:25:42: 54000000 INFO @ Wed, 08 Dec 2021 20:25:45: 62000000 INFO @ Wed, 08 Dec 2021 20:25:47: 58000000 INFO @ Wed, 08 Dec 2021 20:25:51: 55000000 INFO @ Wed, 08 Dec 2021 20:25:53: 63000000 INFO @ Wed, 08 Dec 2021 20:25:56: 59000000 INFO @ Wed, 08 Dec 2021 20:25:59: 56000000 INFO @ Wed, 08 Dec 2021 20:26:01: 64000000 INFO @ Wed, 08 Dec 2021 20:26:04: 60000000 INFO @ Wed, 08 Dec 2021 20:26:08: 57000000 INFO @ Wed, 08 Dec 2021 20:26:09: 65000000 INFO @ Wed, 08 Dec 2021 20:26:13: 61000000 INFO @ Wed, 08 Dec 2021 20:26:16: 58000000 INFO @ Wed, 08 Dec 2021 20:26:18: 66000000 INFO @ Wed, 08 Dec 2021 20:26:21: 62000000 INFO @ Wed, 08 Dec 2021 20:26:25: 59000000 INFO @ Wed, 08 Dec 2021 20:26:26: 67000000 INFO @ Wed, 08 Dec 2021 20:26:29: 63000000 INFO @ Wed, 08 Dec 2021 20:26:33: 60000000 INFO @ Wed, 08 Dec 2021 20:26:34: 68000000 BigWig に変換しました。 INFO @ Wed, 08 Dec 2021 20:26:37: 64000000 INFO @ Wed, 08 Dec 2021 20:26:41: 61000000 INFO @ Wed, 08 Dec 2021 20:26:42: 69000000 INFO @ Wed, 08 Dec 2021 20:26:45: 65000000 INFO @ Wed, 08 Dec 2021 20:26:49: 62000000 INFO @ Wed, 08 Dec 2021 20:26:50: 70000000 INFO @ Wed, 08 Dec 2021 20:26:53: 66000000 INFO @ Wed, 08 Dec 2021 20:26:58: 63000000 INFO @ Wed, 08 Dec 2021 20:26:58: 71000000 INFO @ Wed, 08 Dec 2021 20:27:01: 67000000 INFO @ Wed, 08 Dec 2021 20:27:06: 64000000 INFO @ Wed, 08 Dec 2021 20:27:07: 72000000 INFO @ Wed, 08 Dec 2021 20:27:10: 68000000 INFO @ Wed, 08 Dec 2021 20:27:14: 65000000 INFO @ Wed, 08 Dec 2021 20:27:15: 73000000 INFO @ Wed, 08 Dec 2021 20:27:18: 69000000 INFO @ Wed, 08 Dec 2021 20:27:22: 66000000 INFO @ Wed, 08 Dec 2021 20:27:23: 74000000 INFO @ Wed, 08 Dec 2021 20:27:26: 70000000 INFO @ Wed, 08 Dec 2021 20:27:30: 67000000 INFO @ Wed, 08 Dec 2021 20:27:31: 75000000 INFO @ Wed, 08 Dec 2021 20:27:34: 71000000 INFO @ Wed, 08 Dec 2021 20:27:38: 68000000 INFO @ Wed, 08 Dec 2021 20:27:39: 76000000 INFO @ Wed, 08 Dec 2021 20:27:42: 72000000 INFO @ Wed, 08 Dec 2021 20:27:47: 69000000 INFO @ Wed, 08 Dec 2021 20:27:48: 77000000 INFO @ Wed, 08 Dec 2021 20:27:51: 73000000 INFO @ Wed, 08 Dec 2021 20:27:55: 70000000 INFO @ Wed, 08 Dec 2021 20:27:56: 78000000 INFO @ Wed, 08 Dec 2021 20:27:59: 74000000 INFO @ Wed, 08 Dec 2021 20:28:03: 71000000 INFO @ Wed, 08 Dec 2021 20:28:05: 79000000 INFO @ Wed, 08 Dec 2021 20:28:08: 75000000 INFO @ Wed, 08 Dec 2021 20:28:12: 72000000 INFO @ Wed, 08 Dec 2021 20:28:13: 80000000 INFO @ Wed, 08 Dec 2021 20:28:16: 76000000 INFO @ Wed, 08 Dec 2021 20:28:20: 73000000 INFO @ Wed, 08 Dec 2021 20:28:22: 81000000 INFO @ Wed, 08 Dec 2021 20:28:24: 77000000 INFO @ Wed, 08 Dec 2021 20:28:29: 74000000 INFO @ Wed, 08 Dec 2021 20:28:30: 82000000 INFO @ Wed, 08 Dec 2021 20:28:32: 78000000 INFO @ Wed, 08 Dec 2021 20:28:37: 75000000 INFO @ Wed, 08 Dec 2021 20:28:38: 83000000 INFO @ Wed, 08 Dec 2021 20:28:41: 79000000 INFO @ Wed, 08 Dec 2021 20:28:45: 76000000 INFO @ Wed, 08 Dec 2021 20:28:47: 84000000 INFO @ Wed, 08 Dec 2021 20:28:49: 80000000 INFO @ Wed, 08 Dec 2021 20:28:53: 77000000 INFO @ Wed, 08 Dec 2021 20:28:55: 85000000 INFO @ Wed, 08 Dec 2021 20:28:57: 81000000 INFO @ Wed, 08 Dec 2021 20:29:01: 78000000 INFO @ Wed, 08 Dec 2021 20:29:03: 86000000 INFO @ Wed, 08 Dec 2021 20:29:05: 82000000 INFO @ Wed, 08 Dec 2021 20:29:10: 79000000 INFO @ Wed, 08 Dec 2021 20:29:11: 87000000 INFO @ Wed, 08 Dec 2021 20:29:13: 83000000 INFO @ Wed, 08 Dec 2021 20:29:18: 80000000 INFO @ Wed, 08 Dec 2021 20:29:19: 88000000 INFO @ Wed, 08 Dec 2021 20:29:22: 84000000 INFO @ Wed, 08 Dec 2021 20:29:26: 81000000 INFO @ Wed, 08 Dec 2021 20:29:28: 89000000 INFO @ Wed, 08 Dec 2021 20:29:30: 85000000 INFO @ Wed, 08 Dec 2021 20:29:34: 82000000 INFO @ Wed, 08 Dec 2021 20:29:36: 90000000 INFO @ Wed, 08 Dec 2021 20:29:38: 86000000 INFO @ Wed, 08 Dec 2021 20:29:42: 83000000 INFO @ Wed, 08 Dec 2021 20:29:44: 91000000 INFO @ Wed, 08 Dec 2021 20:29:46: 87000000 INFO @ Wed, 08 Dec 2021 20:29:50: 84000000 INFO @ Wed, 08 Dec 2021 20:29:53: 92000000 INFO @ Wed, 08 Dec 2021 20:29:54: 88000000 INFO @ Wed, 08 Dec 2021 20:29:59: 85000000 INFO @ Wed, 08 Dec 2021 20:30:01: 93000000 INFO @ Wed, 08 Dec 2021 20:30:02: 89000000 INFO @ Wed, 08 Dec 2021 20:30:03: #1 tag size is determined as 150 bps INFO @ Wed, 08 Dec 2021 20:30:03: #1 tag size = 150 INFO @ Wed, 08 Dec 2021 20:30:03: #1 total tags in treatment: 39561696 INFO @ Wed, 08 Dec 2021 20:30:03: #1 user defined the maximum tags... INFO @ Wed, 08 Dec 2021 20:30:03: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 08 Dec 2021 20:30:04: #1 tags after filtering in treatment: 32400375 INFO @ Wed, 08 Dec 2021 20:30:04: #1 Redundant rate of treatment: 0.18 INFO @ Wed, 08 Dec 2021 20:30:04: #1 finished! INFO @ Wed, 08 Dec 2021 20:30:04: #2 Build Peak Model... INFO @ Wed, 08 Dec 2021 20:30:04: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 08 Dec 2021 20:30:06: #2 number of paired peaks: 114 WARNING @ Wed, 08 Dec 2021 20:30:06: Fewer paired peaks (114) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 114 pairs to build model! INFO @ Wed, 08 Dec 2021 20:30:06: start model_add_line... INFO @ Wed, 08 Dec 2021 20:30:06: start X-correlation... INFO @ Wed, 08 Dec 2021 20:30:06: end of X-cor INFO @ Wed, 08 Dec 2021 20:30:06: #2 finished! INFO @ Wed, 08 Dec 2021 20:30:06: #2 predicted fragment length is 140 bps INFO @ Wed, 08 Dec 2021 20:30:06: #2 alternative fragment length(s) may be 2,75,103,140,146,169 bps INFO @ Wed, 08 Dec 2021 20:30:06: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX8948252/SRX8948252.05_model.r WARNING @ Wed, 08 Dec 2021 20:30:06: #2 Since the d (140) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Wed, 08 Dec 2021 20:30:06: #2 You may need to consider one of the other alternative d(s): 2,75,103,140,146,169 WARNING @ Wed, 08 Dec 2021 20:30:06: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Wed, 08 Dec 2021 20:30:06: #3 Call peaks... INFO @ Wed, 08 Dec 2021 20:30:06: #3 Pre-compute pvalue-qvalue table... INFO @ Wed, 08 Dec 2021 20:30:07: 86000000 INFO @ Wed, 08 Dec 2021 20:30:11: 90000000 INFO @ Wed, 08 Dec 2021 20:30:15: 87000000 INFO @ Wed, 08 Dec 2021 20:30:19: 91000000 INFO @ Wed, 08 Dec 2021 20:30:23: 88000000 INFO @ Wed, 08 Dec 2021 20:30:27: 92000000 INFO @ Wed, 08 Dec 2021 20:30:31: 89000000 INFO @ Wed, 08 Dec 2021 20:30:36: 93000000 INFO @ Wed, 08 Dec 2021 20:30:38: #1 tag size is determined as 150 bps INFO @ Wed, 08 Dec 2021 20:30:38: #1 tag size = 150 INFO @ Wed, 08 Dec 2021 20:30:38: #1 total tags in treatment: 39561696 INFO @ Wed, 08 Dec 2021 20:30:38: #1 user defined the maximum tags... INFO @ Wed, 08 Dec 2021 20:30:38: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 08 Dec 2021 20:30:38: #1 tags after filtering in treatment: 32400375 INFO @ Wed, 08 Dec 2021 20:30:38: #1 Redundant rate of treatment: 0.18 INFO @ Wed, 08 Dec 2021 20:30:38: #1 finished! INFO @ Wed, 08 Dec 2021 20:30:38: #2 Build Peak Model... INFO @ Wed, 08 Dec 2021 20:30:38: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 08 Dec 2021 20:30:39: 90000000 INFO @ Wed, 08 Dec 2021 20:30:40: #2 number of paired peaks: 114 WARNING @ Wed, 08 Dec 2021 20:30:40: Fewer paired peaks (114) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 114 pairs to build model! INFO @ Wed, 08 Dec 2021 20:30:40: start model_add_line... INFO @ Wed, 08 Dec 2021 20:30:40: start X-correlation... INFO @ Wed, 08 Dec 2021 20:30:40: end of X-cor INFO @ Wed, 08 Dec 2021 20:30:40: #2 finished! INFO @ Wed, 08 Dec 2021 20:30:40: #2 predicted fragment length is 140 bps INFO @ Wed, 08 Dec 2021 20:30:40: #2 alternative fragment length(s) may be 2,75,103,140,146,169 bps INFO @ Wed, 08 Dec 2021 20:30:40: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX8948252/SRX8948252.10_model.r WARNING @ Wed, 08 Dec 2021 20:30:40: #2 Since the d (140) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Wed, 08 Dec 2021 20:30:40: #2 You may need to consider one of the other alternative d(s): 2,75,103,140,146,169 WARNING @ Wed, 08 Dec 2021 20:30:40: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Wed, 08 Dec 2021 20:30:40: #3 Call peaks... INFO @ Wed, 08 Dec 2021 20:30:40: #3 Pre-compute pvalue-qvalue table... INFO @ Wed, 08 Dec 2021 20:30:47: 91000000 INFO @ Wed, 08 Dec 2021 20:30:54: 92000000 INFO @ Wed, 08 Dec 2021 20:30:55: #3 Call peaks for each chromosome... INFO @ Wed, 08 Dec 2021 20:31:02: 93000000 INFO @ Wed, 08 Dec 2021 20:31:03: #1 tag size is determined as 150 bps INFO @ Wed, 08 Dec 2021 20:31:03: #1 tag size = 150 INFO @ Wed, 08 Dec 2021 20:31:03: #1 total tags in treatment: 39561696 INFO @ Wed, 08 Dec 2021 20:31:03: #1 user defined the maximum tags... INFO @ Wed, 08 Dec 2021 20:31:03: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 08 Dec 2021 20:31:04: #1 tags after filtering in treatment: 32400375 INFO @ Wed, 08 Dec 2021 20:31:04: #1 Redundant rate of treatment: 0.18 INFO @ Wed, 08 Dec 2021 20:31:04: #1 finished! INFO @ Wed, 08 Dec 2021 20:31:04: #2 Build Peak Model... INFO @ Wed, 08 Dec 2021 20:31:04: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 08 Dec 2021 20:31:06: #2 number of paired peaks: 114 WARNING @ Wed, 08 Dec 2021 20:31:06: Fewer paired peaks (114) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 114 pairs to build model! INFO @ Wed, 08 Dec 2021 20:31:06: start model_add_line... INFO @ Wed, 08 Dec 2021 20:31:06: start X-correlation... INFO @ Wed, 08 Dec 2021 20:31:06: end of X-cor INFO @ Wed, 08 Dec 2021 20:31:06: #2 finished! INFO @ Wed, 08 Dec 2021 20:31:06: #2 predicted fragment length is 140 bps INFO @ Wed, 08 Dec 2021 20:31:06: #2 alternative fragment length(s) may be 2,75,103,140,146,169 bps INFO @ Wed, 08 Dec 2021 20:31:06: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX8948252/SRX8948252.20_model.r WARNING @ Wed, 08 Dec 2021 20:31:06: #2 Since the d (140) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Wed, 08 Dec 2021 20:31:06: #2 You may need to consider one of the other alternative d(s): 2,75,103,140,146,169 WARNING @ Wed, 08 Dec 2021 20:31:06: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Wed, 08 Dec 2021 20:31:06: #3 Call peaks... INFO @ Wed, 08 Dec 2021 20:31:06: #3 Pre-compute pvalue-qvalue table... INFO @ Wed, 08 Dec 2021 20:31:18: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX8948252/SRX8948252.05_peaks.xls INFO @ Wed, 08 Dec 2021 20:31:18: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX8948252/SRX8948252.05_peaks.narrowPeak INFO @ Wed, 08 Dec 2021 20:31:18: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX8948252/SRX8948252.05_summits.bed INFO @ Wed, 08 Dec 2021 20:31:18: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (1163 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Wed, 08 Dec 2021 20:31:30: #3 Call peaks for each chromosome... INFO @ Wed, 08 Dec 2021 20:31:52: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX8948252/SRX8948252.10_peaks.xls INFO @ Wed, 08 Dec 2021 20:31:52: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX8948252/SRX8948252.10_peaks.narrowPeak INFO @ Wed, 08 Dec 2021 20:31:52: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX8948252/SRX8948252.10_summits.bed INFO @ Wed, 08 Dec 2021 20:31:52: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (617 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Wed, 08 Dec 2021 20:31:57: #3 Call peaks for each chromosome... INFO @ Wed, 08 Dec 2021 20:32:18: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX8948252/SRX8948252.20_peaks.xls INFO @ Wed, 08 Dec 2021 20:32:18: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX8948252/SRX8948252.20_peaks.narrowPeak INFO @ Wed, 08 Dec 2021 20:32:18: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX8948252/SRX8948252.20_summits.bed INFO @ Wed, 08 Dec 2021 20:32:18: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (325 records, 4 fields): 1 millis CompletedMACS2peakCalling