Job ID = 14160400 SRX = SRX8582556 Genome = ce10 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... Read 54526284 spots for SRR12054117/SRR12054117.sra Written 54526284 spots for SRR12054117/SRR12054117.sra fastq に変換しました。 bowtie でマッピング中... Your job 14160567 ("srTce11") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:18:57 54526284 reads; of these: 54526284 (100.00%) were unpaired; of these: 513806 (0.94%) aligned 0 times 44325683 (81.29%) aligned exactly 1 time 9686795 (17.77%) aligned >1 times 99.06% overall alignment rate Time searching: 00:18:57 Overall time: 00:18:57 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 24 files... [bam_rmdupse_core] 12964192 / 54012478 = 0.2400 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 09 Dec 2021 02:44:54: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX8582556/SRX8582556.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX8582556/SRX8582556.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX8582556/SRX8582556.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX8582556/SRX8582556.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 09 Dec 2021 02:44:54: #1 read tag files... INFO @ Thu, 09 Dec 2021 02:44:54: #1 read treatment tags... INFO @ Thu, 09 Dec 2021 02:45:02: 1000000 INFO @ Thu, 09 Dec 2021 02:45:10: 2000000 INFO @ Thu, 09 Dec 2021 02:45:18: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 09 Dec 2021 02:45:24: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX8582556/SRX8582556.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX8582556/SRX8582556.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX8582556/SRX8582556.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX8582556/SRX8582556.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 09 Dec 2021 02:45:24: #1 read tag files... INFO @ Thu, 09 Dec 2021 02:45:24: #1 read treatment tags... INFO @ Thu, 09 Dec 2021 02:45:26: 4000000 INFO @ Thu, 09 Dec 2021 02:45:32: 1000000 INFO @ Thu, 09 Dec 2021 02:45:33: 5000000 INFO @ Thu, 09 Dec 2021 02:45:40: 2000000 INFO @ Thu, 09 Dec 2021 02:45:41: 6000000 INFO @ Thu, 09 Dec 2021 02:45:48: 3000000 INFO @ Thu, 09 Dec 2021 02:45:49: 7000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 09 Dec 2021 02:45:54: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX8582556/SRX8582556.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX8582556/SRX8582556.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX8582556/SRX8582556.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX8582556/SRX8582556.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 09 Dec 2021 02:45:54: #1 read tag files... INFO @ Thu, 09 Dec 2021 02:45:54: #1 read treatment tags... INFO @ Thu, 09 Dec 2021 02:45:56: 4000000 INFO @ Thu, 09 Dec 2021 02:45:57: 8000000 INFO @ Thu, 09 Dec 2021 02:46:04: 5000000 INFO @ Thu, 09 Dec 2021 02:46:04: 1000000 INFO @ Thu, 09 Dec 2021 02:46:04: 9000000 INFO @ Thu, 09 Dec 2021 02:46:12: 10000000 INFO @ Thu, 09 Dec 2021 02:46:12: 6000000 INFO @ Thu, 09 Dec 2021 02:46:13: 2000000 INFO @ Thu, 09 Dec 2021 02:46:20: 11000000 INFO @ Thu, 09 Dec 2021 02:46:20: 7000000 INFO @ Thu, 09 Dec 2021 02:46:22: 3000000 INFO @ Thu, 09 Dec 2021 02:46:28: 12000000 INFO @ Thu, 09 Dec 2021 02:46:28: 8000000 INFO @ Thu, 09 Dec 2021 02:46:31: 4000000 INFO @ Thu, 09 Dec 2021 02:46:35: 13000000 INFO @ Thu, 09 Dec 2021 02:46:36: 9000000 INFO @ Thu, 09 Dec 2021 02:46:40: 5000000 INFO @ Thu, 09 Dec 2021 02:46:43: 14000000 INFO @ Thu, 09 Dec 2021 02:46:44: 10000000 INFO @ Thu, 09 Dec 2021 02:46:49: 6000000 INFO @ Thu, 09 Dec 2021 02:46:52: 15000000 INFO @ Thu, 09 Dec 2021 02:46:52: 11000000 INFO @ Thu, 09 Dec 2021 02:46:58: 7000000 INFO @ Thu, 09 Dec 2021 02:47:00: 16000000 INFO @ Thu, 09 Dec 2021 02:47:00: 12000000 INFO @ Thu, 09 Dec 2021 02:47:07: 8000000 INFO @ Thu, 09 Dec 2021 02:47:08: 17000000 INFO @ Thu, 09 Dec 2021 02:47:08: 13000000 INFO @ Thu, 09 Dec 2021 02:47:16: 18000000 INFO @ Thu, 09 Dec 2021 02:47:16: 9000000 INFO @ Thu, 09 Dec 2021 02:47:16: 14000000 INFO @ Thu, 09 Dec 2021 02:47:24: 19000000 INFO @ Thu, 09 Dec 2021 02:47:24: 15000000 INFO @ Thu, 09 Dec 2021 02:47:25: 10000000 INFO @ Thu, 09 Dec 2021 02:47:32: 20000000 INFO @ Thu, 09 Dec 2021 02:47:32: 16000000 INFO @ Thu, 09 Dec 2021 02:47:34: 11000000 INFO @ Thu, 09 Dec 2021 02:47:40: 21000000 INFO @ Thu, 09 Dec 2021 02:47:41: 17000000 INFO @ Thu, 09 Dec 2021 02:47:42: 12000000 INFO @ Thu, 09 Dec 2021 02:47:48: 22000000 INFO @ Thu, 09 Dec 2021 02:47:49: 18000000 INFO @ Thu, 09 Dec 2021 02:47:51: 13000000 INFO @ Thu, 09 Dec 2021 02:47:56: 23000000 INFO @ Thu, 09 Dec 2021 02:47:57: 19000000 INFO @ Thu, 09 Dec 2021 02:48:00: 14000000 INFO @ Thu, 09 Dec 2021 02:48:04: 24000000 INFO @ Thu, 09 Dec 2021 02:48:06: 20000000 INFO @ Thu, 09 Dec 2021 02:48:09: 15000000 INFO @ Thu, 09 Dec 2021 02:48:11: 25000000 INFO @ Thu, 09 Dec 2021 02:48:13: 21000000 INFO @ Thu, 09 Dec 2021 02:48:18: 16000000 INFO @ Thu, 09 Dec 2021 02:48:19: 26000000 INFO @ Thu, 09 Dec 2021 02:48:21: 22000000 INFO @ Thu, 09 Dec 2021 02:48:26: 17000000 INFO @ Thu, 09 Dec 2021 02:48:27: 27000000 INFO @ Thu, 09 Dec 2021 02:48:29: 23000000 INFO @ Thu, 09 Dec 2021 02:48:34: 28000000 INFO @ Thu, 09 Dec 2021 02:48:35: 18000000 INFO @ Thu, 09 Dec 2021 02:48:37: 24000000 INFO @ Thu, 09 Dec 2021 02:48:42: 29000000 INFO @ Thu, 09 Dec 2021 02:48:44: 19000000 INFO @ Thu, 09 Dec 2021 02:48:45: 25000000 INFO @ Thu, 09 Dec 2021 02:48:50: 30000000 INFO @ Thu, 09 Dec 2021 02:48:53: 26000000 INFO @ Thu, 09 Dec 2021 02:48:53: 20000000 INFO @ Thu, 09 Dec 2021 02:48:57: 31000000 INFO @ Thu, 09 Dec 2021 02:49:01: 27000000 INFO @ Thu, 09 Dec 2021 02:49:02: 21000000 INFO @ Thu, 09 Dec 2021 02:49:05: 32000000 INFO @ Thu, 09 Dec 2021 02:49:08: 28000000 INFO @ Thu, 09 Dec 2021 02:49:10: 22000000 INFO @ Thu, 09 Dec 2021 02:49:13: 33000000 INFO @ Thu, 09 Dec 2021 02:49:16: 29000000 INFO @ Thu, 09 Dec 2021 02:49:19: 23000000 INFO @ Thu, 09 Dec 2021 02:49:21: 34000000 INFO @ Thu, 09 Dec 2021 02:49:24: 30000000 INFO @ Thu, 09 Dec 2021 02:49:28: 24000000 INFO @ Thu, 09 Dec 2021 02:49:28: 35000000 INFO @ Thu, 09 Dec 2021 02:49:32: 31000000 INFO @ Thu, 09 Dec 2021 02:49:36: 36000000 INFO @ Thu, 09 Dec 2021 02:49:37: 25000000 INFO @ Thu, 09 Dec 2021 02:49:40: 32000000 INFO @ Thu, 09 Dec 2021 02:49:44: 37000000 INFO @ Thu, 09 Dec 2021 02:49:46: 26000000 INFO @ Thu, 09 Dec 2021 02:49:48: 33000000 INFO @ Thu, 09 Dec 2021 02:49:52: 38000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Thu, 09 Dec 2021 02:49:54: 27000000 INFO @ Thu, 09 Dec 2021 02:49:56: 34000000 INFO @ Thu, 09 Dec 2021 02:50:00: 39000000 INFO @ Thu, 09 Dec 2021 02:50:03: 28000000 INFO @ Thu, 09 Dec 2021 02:50:04: 35000000 INFO @ Thu, 09 Dec 2021 02:50:08: 40000000 INFO @ Thu, 09 Dec 2021 02:50:12: 29000000 INFO @ Thu, 09 Dec 2021 02:50:12: 36000000 INFO @ Thu, 09 Dec 2021 02:50:17: 41000000 INFO @ Thu, 09 Dec 2021 02:50:18: #1 tag size is determined as 51 bps INFO @ Thu, 09 Dec 2021 02:50:18: #1 tag size = 51 INFO @ Thu, 09 Dec 2021 02:50:18: #1 total tags in treatment: 41048286 INFO @ Thu, 09 Dec 2021 02:50:18: #1 user defined the maximum tags... INFO @ Thu, 09 Dec 2021 02:50:18: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 09 Dec 2021 02:50:18: #1 tags after filtering in treatment: 41048286 INFO @ Thu, 09 Dec 2021 02:50:18: #1 Redundant rate of treatment: 0.00 INFO @ Thu, 09 Dec 2021 02:50:18: #1 finished! INFO @ Thu, 09 Dec 2021 02:50:18: #2 Build Peak Model... INFO @ Thu, 09 Dec 2021 02:50:18: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 09 Dec 2021 02:50:20: 37000000 INFO @ Thu, 09 Dec 2021 02:50:20: 30000000 INFO @ Thu, 09 Dec 2021 02:50:22: #2 number of paired peaks: 0 WARNING @ Thu, 09 Dec 2021 02:50:22: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Thu, 09 Dec 2021 02:50:22: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/ce10/SRX8582556/SRX8582556.05_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/ce10/SRX8582556/SRX8582556.05_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/ce10/SRX8582556/SRX8582556.05_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/ce10/SRX8582556/SRX8582556.05_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Thu, 09 Dec 2021 02:50:27: 38000000 INFO @ Thu, 09 Dec 2021 02:50:29: 31000000 INFO @ Thu, 09 Dec 2021 02:50:35: 39000000 INFO @ Thu, 09 Dec 2021 02:50:37: 32000000 INFO @ Thu, 09 Dec 2021 02:50:43: 40000000 INFO @ Thu, 09 Dec 2021 02:50:46: 33000000 INFO @ Thu, 09 Dec 2021 02:50:50: 41000000 INFO @ Thu, 09 Dec 2021 02:50:51: #1 tag size is determined as 51 bps INFO @ Thu, 09 Dec 2021 02:50:51: #1 tag size = 51 INFO @ Thu, 09 Dec 2021 02:50:51: #1 total tags in treatment: 41048286 INFO @ Thu, 09 Dec 2021 02:50:51: #1 user defined the maximum tags... INFO @ Thu, 09 Dec 2021 02:50:51: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 09 Dec 2021 02:50:52: #1 tags after filtering in treatment: 41048286 INFO @ Thu, 09 Dec 2021 02:50:52: #1 Redundant rate of treatment: 0.00 INFO @ Thu, 09 Dec 2021 02:50:52: #1 finished! INFO @ Thu, 09 Dec 2021 02:50:52: #2 Build Peak Model... INFO @ Thu, 09 Dec 2021 02:50:52: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 09 Dec 2021 02:50:55: 34000000 INFO @ Thu, 09 Dec 2021 02:50:55: #2 number of paired peaks: 0 WARNING @ Thu, 09 Dec 2021 02:50:55: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Thu, 09 Dec 2021 02:50:55: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/ce10/SRX8582556/SRX8582556.10_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/ce10/SRX8582556/SRX8582556.10_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/ce10/SRX8582556/SRX8582556.10_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/ce10/SRX8582556/SRX8582556.10_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Thu, 09 Dec 2021 02:51:04: 35000000 INFO @ Thu, 09 Dec 2021 02:51:12: 36000000 INFO @ Thu, 09 Dec 2021 02:51:21: 37000000 INFO @ Thu, 09 Dec 2021 02:51:29: 38000000 BigWig に変換しました。 INFO @ Thu, 09 Dec 2021 02:51:37: 39000000 INFO @ Thu, 09 Dec 2021 02:51:46: 40000000 INFO @ Thu, 09 Dec 2021 02:51:55: 41000000 INFO @ Thu, 09 Dec 2021 02:51:55: #1 tag size is determined as 51 bps INFO @ Thu, 09 Dec 2021 02:51:55: #1 tag size = 51 INFO @ Thu, 09 Dec 2021 02:51:55: #1 total tags in treatment: 41048286 INFO @ Thu, 09 Dec 2021 02:51:55: #1 user defined the maximum tags... INFO @ Thu, 09 Dec 2021 02:51:55: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 09 Dec 2021 02:51:56: #1 tags after filtering in treatment: 41048286 INFO @ Thu, 09 Dec 2021 02:51:56: #1 Redundant rate of treatment: 0.00 INFO @ Thu, 09 Dec 2021 02:51:56: #1 finished! INFO @ Thu, 09 Dec 2021 02:51:56: #2 Build Peak Model... INFO @ Thu, 09 Dec 2021 02:51:56: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 09 Dec 2021 02:51:59: #2 number of paired peaks: 0 WARNING @ Thu, 09 Dec 2021 02:51:59: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Thu, 09 Dec 2021 02:51:59: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/ce10/SRX8582556/SRX8582556.20_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 2 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/ce10/SRX8582556/SRX8582556.20_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/ce10/SRX8582556/SRX8582556.20_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/ce10/SRX8582556/SRX8582556.20_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling