Job ID = 12264825 SRX = SRX7687148 Genome = ce10 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 25143065 spots for SRR11034891/SRR11034891.sra Written 25143065 spots for SRR11034891/SRR11034891.sra fastq に変換しました。 bowtie でマッピング中... Your job 12265503 ("srTce11") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:54:22 25143065 reads; of these: 25143065 (100.00%) were paired; of these: 5233657 (20.82%) aligned concordantly 0 times 14486605 (57.62%) aligned concordantly exactly 1 time 5422803 (21.57%) aligned concordantly >1 times ---- 5233657 pairs aligned concordantly 0 times; of these: 3930167 (75.09%) aligned discordantly 1 time ---- 1303490 pairs aligned 0 times concordantly or discordantly; of these: 2606980 mates make up the pairs; of these: 938141 (35.99%) aligned 0 times 623485 (23.92%) aligned exactly 1 time 1045354 (40.10%) aligned >1 times 98.13% overall alignment rate Time searching: 00:54:22 Overall time: 00:54:22 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 24 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 4257432 / 23806039 = 0.1788 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:06:26: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX7687148/SRX7687148.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX7687148/SRX7687148.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX7687148/SRX7687148.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX7687148/SRX7687148.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:06:26: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:06:26: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:06:32: 1000000 INFO @ Sat, 03 Apr 2021 07:06:38: 2000000 INFO @ Sat, 03 Apr 2021 07:06:44: 3000000 INFO @ Sat, 03 Apr 2021 07:06:50: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:06:55: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX7687148/SRX7687148.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX7687148/SRX7687148.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX7687148/SRX7687148.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX7687148/SRX7687148.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:06:55: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:06:55: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:06:56: 5000000 INFO @ Sat, 03 Apr 2021 07:07:02: 1000000 INFO @ Sat, 03 Apr 2021 07:07:02: 6000000 INFO @ Sat, 03 Apr 2021 07:07:09: 7000000 INFO @ Sat, 03 Apr 2021 07:07:09: 2000000 INFO @ Sat, 03 Apr 2021 07:07:16: 8000000 INFO @ Sat, 03 Apr 2021 07:07:16: 3000000 BedGraph に変換中... INFO @ Sat, 03 Apr 2021 07:07:23: 9000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:07:23: 4000000 INFO @ Sat, 03 Apr 2021 07:07:25: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX7687148/SRX7687148.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX7687148/SRX7687148.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX7687148/SRX7687148.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX7687148/SRX7687148.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:07:25: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:07:25: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:07:30: 10000000 INFO @ Sat, 03 Apr 2021 07:07:30: 1000000 INFO @ Sat, 03 Apr 2021 07:07:31: 5000000 INFO @ Sat, 03 Apr 2021 07:07:35: 2000000 INFO @ Sat, 03 Apr 2021 07:07:38: 11000000 INFO @ Sat, 03 Apr 2021 07:07:38: 6000000 INFO @ Sat, 03 Apr 2021 07:07:40: 3000000 INFO @ Sat, 03 Apr 2021 07:07:45: 12000000 INFO @ Sat, 03 Apr 2021 07:07:45: 4000000 INFO @ Sat, 03 Apr 2021 07:07:45: 7000000 INFO @ Sat, 03 Apr 2021 07:07:50: 5000000 INFO @ Sat, 03 Apr 2021 07:07:52: 13000000 INFO @ Sat, 03 Apr 2021 07:07:53: 8000000 INFO @ Sat, 03 Apr 2021 07:07:55: 6000000 INFO @ Sat, 03 Apr 2021 07:07:59: 14000000 INFO @ Sat, 03 Apr 2021 07:08:00: 9000000 INFO @ Sat, 03 Apr 2021 07:08:00: 7000000 INFO @ Sat, 03 Apr 2021 07:08:04: 8000000 INFO @ Sat, 03 Apr 2021 07:08:06: 15000000 INFO @ Sat, 03 Apr 2021 07:08:07: 10000000 INFO @ Sat, 03 Apr 2021 07:08:09: 9000000 INFO @ Sat, 03 Apr 2021 07:08:13: 11000000 INFO @ Sat, 03 Apr 2021 07:08:14: 16000000 INFO @ Sat, 03 Apr 2021 07:08:14: 10000000 INFO @ Sat, 03 Apr 2021 07:08:19: 11000000 INFO @ Sat, 03 Apr 2021 07:08:20: 12000000 INFO @ Sat, 03 Apr 2021 07:08:21: 17000000 INFO @ Sat, 03 Apr 2021 07:08:23: 12000000 INFO @ Sat, 03 Apr 2021 07:08:27: 13000000 INFO @ Sat, 03 Apr 2021 07:08:28: 18000000 INFO @ Sat, 03 Apr 2021 07:08:28: 13000000 INFO @ Sat, 03 Apr 2021 07:08:33: 14000000 INFO @ Sat, 03 Apr 2021 07:08:34: 14000000 INFO @ Sat, 03 Apr 2021 07:08:35: 19000000 INFO @ Sat, 03 Apr 2021 07:08:38: 15000000 INFO @ Sat, 03 Apr 2021 07:08:41: 15000000 INFO @ Sat, 03 Apr 2021 07:08:42: 20000000 INFO @ Sat, 03 Apr 2021 07:08:42: 16000000 INFO @ Sat, 03 Apr 2021 07:08:47: 17000000 INFO @ Sat, 03 Apr 2021 07:08:48: 16000000 INFO @ Sat, 03 Apr 2021 07:08:50: 21000000 INFO @ Sat, 03 Apr 2021 07:08:52: 18000000 INFO @ Sat, 03 Apr 2021 07:08:56: 17000000 INFO @ Sat, 03 Apr 2021 07:08:56: 22000000 INFO @ Sat, 03 Apr 2021 07:08:57: 19000000 INFO @ Sat, 03 Apr 2021 07:09:02: 20000000 INFO @ Sat, 03 Apr 2021 07:09:03: 18000000 INFO @ Sat, 03 Apr 2021 07:09:03: 23000000 INFO @ Sat, 03 Apr 2021 07:09:06: 21000000 INFO @ Sat, 03 Apr 2021 07:09:10: 19000000 INFO @ Sat, 03 Apr 2021 07:09:11: 24000000 INFO @ Sat, 03 Apr 2021 07:09:11: 22000000 INFO @ Sat, 03 Apr 2021 07:09:16: 23000000 INFO @ Sat, 03 Apr 2021 07:09:17: 20000000 INFO @ Sat, 03 Apr 2021 07:09:18: 25000000 INFO @ Sat, 03 Apr 2021 07:09:21: 24000000 INFO @ Sat, 03 Apr 2021 07:09:25: 21000000 INFO @ Sat, 03 Apr 2021 07:09:25: 26000000 INFO @ Sat, 03 Apr 2021 07:09:26: 25000000 INFO @ Sat, 03 Apr 2021 07:09:30: 26000000 INFO @ Sat, 03 Apr 2021 07:09:31: 22000000 INFO @ Sat, 03 Apr 2021 07:09:32: 27000000 INFO @ Sat, 03 Apr 2021 07:09:35: 27000000 INFO @ Sat, 03 Apr 2021 07:09:39: 23000000 INFO @ Sat, 03 Apr 2021 07:09:39: 28000000 INFO @ Sat, 03 Apr 2021 07:09:40: 28000000 INFO @ Sat, 03 Apr 2021 07:09:45: 29000000 INFO @ Sat, 03 Apr 2021 07:09:46: 29000000 INFO @ Sat, 03 Apr 2021 07:09:46: 24000000 INFO @ Sat, 03 Apr 2021 07:09:50: 30000000 INFO @ Sat, 03 Apr 2021 07:09:53: 30000000 INFO @ Sat, 03 Apr 2021 07:09:54: 25000000 INFO @ Sat, 03 Apr 2021 07:09:55: 31000000 INFO @ Sat, 03 Apr 2021 07:10:00: 31000000 INFO @ Sat, 03 Apr 2021 07:10:01: 32000000 INFO @ Sat, 03 Apr 2021 07:10:01: 26000000 INFO @ Sat, 03 Apr 2021 07:10:06: 33000000 INFO @ Sat, 03 Apr 2021 07:10:08: 32000000 INFO @ Sat, 03 Apr 2021 07:10:09: 27000000 INFO @ Sat, 03 Apr 2021 07:10:11: 34000000 INFO @ Sat, 03 Apr 2021 07:10:15: 33000000 INFO @ Sat, 03 Apr 2021 07:10:16: 35000000 INFO @ Sat, 03 Apr 2021 07:10:16: 28000000 INFO @ Sat, 03 Apr 2021 07:10:22: 36000000 INFO @ Sat, 03 Apr 2021 07:10:23: 34000000 INFO @ Sat, 03 Apr 2021 07:10:24: 29000000 INFO @ Sat, 03 Apr 2021 07:10:28: 37000000 INFO @ Sat, 03 Apr 2021 07:10:30: 35000000 INFO @ Sat, 03 Apr 2021 07:10:31: 30000000 INFO @ Sat, 03 Apr 2021 07:10:34: 38000000 INFO @ Sat, 03 Apr 2021 07:10:38: 36000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 07:10:39: 31000000 INFO @ Sat, 03 Apr 2021 07:10:40: 39000000 INFO @ Sat, 03 Apr 2021 07:10:45: 37000000 INFO @ Sat, 03 Apr 2021 07:10:46: 40000000 INFO @ Sat, 03 Apr 2021 07:10:47: 32000000 INFO @ Sat, 03 Apr 2021 07:10:52: #1 tag size is determined as 75 bps INFO @ Sat, 03 Apr 2021 07:10:52: #1 tag size = 75 INFO @ Sat, 03 Apr 2021 07:10:52: #1 total tags in treatment: 16003453 INFO @ Sat, 03 Apr 2021 07:10:52: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 07:10:52: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 07:10:52: #1 tags after filtering in treatment: 11411840 INFO @ Sat, 03 Apr 2021 07:10:52: #1 Redundant rate of treatment: 0.29 INFO @ Sat, 03 Apr 2021 07:10:52: #1 finished! INFO @ Sat, 03 Apr 2021 07:10:52: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 07:10:52: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 07:10:53: #2 number of paired peaks: 406 WARNING @ Sat, 03 Apr 2021 07:10:53: Fewer paired peaks (406) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 406 pairs to build model! INFO @ Sat, 03 Apr 2021 07:10:53: start model_add_line... INFO @ Sat, 03 Apr 2021 07:10:53: start X-correlation... INFO @ Sat, 03 Apr 2021 07:10:53: end of X-cor INFO @ Sat, 03 Apr 2021 07:10:53: #2 finished! INFO @ Sat, 03 Apr 2021 07:10:53: #2 predicted fragment length is 115 bps INFO @ Sat, 03 Apr 2021 07:10:53: #2 alternative fragment length(s) may be 4,108,115,134 bps INFO @ Sat, 03 Apr 2021 07:10:53: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX7687148/SRX7687148.20_model.r WARNING @ Sat, 03 Apr 2021 07:10:53: #2 Since the d (115) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 07:10:53: #2 You may need to consider one of the other alternative d(s): 4,108,115,134 WARNING @ Sat, 03 Apr 2021 07:10:53: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 07:10:53: #3 Call peaks... INFO @ Sat, 03 Apr 2021 07:10:53: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 07:10:53: 38000000 INFO @ Sat, 03 Apr 2021 07:10:55: 33000000 INFO @ Sat, 03 Apr 2021 07:11:00: 39000000 INFO @ Sat, 03 Apr 2021 07:11:02: 34000000 INFO @ Sat, 03 Apr 2021 07:11:08: 40000000 INFO @ Sat, 03 Apr 2021 07:11:10: 35000000 INFO @ Sat, 03 Apr 2021 07:11:14: #1 tag size is determined as 75 bps INFO @ Sat, 03 Apr 2021 07:11:14: #1 tag size = 75 INFO @ Sat, 03 Apr 2021 07:11:14: #1 total tags in treatment: 16003453 INFO @ Sat, 03 Apr 2021 07:11:14: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 07:11:14: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 07:11:14: #1 tags after filtering in treatment: 11411840 INFO @ Sat, 03 Apr 2021 07:11:14: #1 Redundant rate of treatment: 0.29 INFO @ Sat, 03 Apr 2021 07:11:14: #1 finished! INFO @ Sat, 03 Apr 2021 07:11:14: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 07:11:14: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 07:11:15: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 07:11:15: #2 number of paired peaks: 406 WARNING @ Sat, 03 Apr 2021 07:11:15: Fewer paired peaks (406) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 406 pairs to build model! INFO @ Sat, 03 Apr 2021 07:11:15: start model_add_line... INFO @ Sat, 03 Apr 2021 07:11:15: start X-correlation... INFO @ Sat, 03 Apr 2021 07:11:15: end of X-cor INFO @ Sat, 03 Apr 2021 07:11:15: #2 finished! INFO @ Sat, 03 Apr 2021 07:11:15: #2 predicted fragment length is 115 bps INFO @ Sat, 03 Apr 2021 07:11:15: #2 alternative fragment length(s) may be 4,108,115,134 bps INFO @ Sat, 03 Apr 2021 07:11:15: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX7687148/SRX7687148.05_model.r WARNING @ Sat, 03 Apr 2021 07:11:15: #2 Since the d (115) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 07:11:15: #2 You may need to consider one of the other alternative d(s): 4,108,115,134 WARNING @ Sat, 03 Apr 2021 07:11:15: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 07:11:15: #3 Call peaks... INFO @ Sat, 03 Apr 2021 07:11:15: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 07:11:18: 36000000 INFO @ Sat, 03 Apr 2021 07:11:25: 37000000 INFO @ Sat, 03 Apr 2021 07:11:26: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX7687148/SRX7687148.20_peaks.xls INFO @ Sat, 03 Apr 2021 07:11:26: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX7687148/SRX7687148.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 07:11:26: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX7687148/SRX7687148.20_summits.bed INFO @ Sat, 03 Apr 2021 07:11:26: Done! pass1 - making usageList (6 chroms): 0 millis pass2 - checking and writing primary data (171 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 07:11:32: 38000000 INFO @ Sat, 03 Apr 2021 07:11:38: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 07:11:40: 39000000 INFO @ Sat, 03 Apr 2021 07:11:47: 40000000 BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 07:11:49: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX7687148/SRX7687148.05_peaks.xls INFO @ Sat, 03 Apr 2021 07:11:49: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX7687148/SRX7687148.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 07:11:49: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX7687148/SRX7687148.05_summits.bed INFO @ Sat, 03 Apr 2021 07:11:49: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (518 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 07:11:53: #1 tag size is determined as 75 bps INFO @ Sat, 03 Apr 2021 07:11:53: #1 tag size = 75 INFO @ Sat, 03 Apr 2021 07:11:53: #1 total tags in treatment: 16003453 INFO @ Sat, 03 Apr 2021 07:11:53: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 07:11:53: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 07:11:54: #1 tags after filtering in treatment: 11411840 INFO @ Sat, 03 Apr 2021 07:11:54: #1 Redundant rate of treatment: 0.29 INFO @ Sat, 03 Apr 2021 07:11:54: #1 finished! INFO @ Sat, 03 Apr 2021 07:11:54: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 07:11:54: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 07:11:54: #2 number of paired peaks: 406 WARNING @ Sat, 03 Apr 2021 07:11:54: Fewer paired peaks (406) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 406 pairs to build model! INFO @ Sat, 03 Apr 2021 07:11:54: start model_add_line... INFO @ Sat, 03 Apr 2021 07:11:55: start X-correlation... INFO @ Sat, 03 Apr 2021 07:11:55: end of X-cor INFO @ Sat, 03 Apr 2021 07:11:55: #2 finished! INFO @ Sat, 03 Apr 2021 07:11:55: #2 predicted fragment length is 115 bps INFO @ Sat, 03 Apr 2021 07:11:55: #2 alternative fragment length(s) may be 4,108,115,134 bps INFO @ Sat, 03 Apr 2021 07:11:55: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX7687148/SRX7687148.10_model.r WARNING @ Sat, 03 Apr 2021 07:11:55: #2 Since the d (115) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 07:11:55: #2 You may need to consider one of the other alternative d(s): 4,108,115,134 WARNING @ Sat, 03 Apr 2021 07:11:55: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 07:11:55: #3 Call peaks... INFO @ Sat, 03 Apr 2021 07:11:55: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 07:12:17: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 07:12:29: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX7687148/SRX7687148.10_peaks.xls INFO @ Sat, 03 Apr 2021 07:12:29: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX7687148/SRX7687148.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 07:12:29: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX7687148/SRX7687148.10_summits.bed INFO @ Sat, 03 Apr 2021 07:12:29: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (340 records, 4 fields): 2 millis CompletedMACS2peakCalling