Job ID = 12264817 SRX = SRX7246274 Genome = ce10 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 97814500 spots for SRR10564690/SRR10564690.sra Written 97814500 spots for SRR10564690/SRR10564690.sra fastq に変換しました。 bowtie でマッピング中... Your job 12267550 ("srTce11") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 03:29:05 97814500 reads; of these: 97814500 (100.00%) were paired; of these: 52243131 (53.41%) aligned concordantly 0 times 39801151 (40.69%) aligned concordantly exactly 1 time 5770218 (5.90%) aligned concordantly >1 times ---- 52243131 pairs aligned concordantly 0 times; of these: 12961559 (24.81%) aligned discordantly 1 time ---- 39281572 pairs aligned 0 times concordantly or discordantly; of these: 78563144 mates make up the pairs; of these: 73348674 (93.36%) aligned 0 times 2166887 (2.76%) aligned exactly 1 time 3047583 (3.88%) aligned >1 times 62.51% overall alignment rate Time searching: 03:29:05 Overall time: 03:29:05 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 92 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 21602094 / 58141103 = 0.3715 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 11:09:26: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX7246274/SRX7246274.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX7246274/SRX7246274.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX7246274/SRX7246274.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX7246274/SRX7246274.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 11:09:26: #1 read tag files... INFO @ Sat, 03 Apr 2021 11:09:26: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 11:09:37: 1000000 INFO @ Sat, 03 Apr 2021 11:09:46: 2000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 11:09:56: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX7246274/SRX7246274.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX7246274/SRX7246274.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX7246274/SRX7246274.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX7246274/SRX7246274.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 11:09:56: #1 read tag files... INFO @ Sat, 03 Apr 2021 11:09:56: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 11:09:56: 3000000 INFO @ Sat, 03 Apr 2021 11:10:05: 1000000 INFO @ Sat, 03 Apr 2021 11:10:06: 4000000 INFO @ Sat, 03 Apr 2021 11:10:16: 5000000 INFO @ Sat, 03 Apr 2021 11:10:17: 2000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 11:10:26: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX7246274/SRX7246274.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX7246274/SRX7246274.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX7246274/SRX7246274.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX7246274/SRX7246274.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 11:10:26: #1 read tag files... INFO @ Sat, 03 Apr 2021 11:10:26: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 11:10:27: 6000000 INFO @ Sat, 03 Apr 2021 11:10:28: 3000000 INFO @ Sat, 03 Apr 2021 11:10:38: 1000000 INFO @ Sat, 03 Apr 2021 11:10:38: 4000000 INFO @ Sat, 03 Apr 2021 11:10:39: 7000000 INFO @ Sat, 03 Apr 2021 11:10:48: 5000000 INFO @ Sat, 03 Apr 2021 11:10:50: 2000000 INFO @ Sat, 03 Apr 2021 11:10:55: 8000000 INFO @ Sat, 03 Apr 2021 11:10:59: 6000000 INFO @ Sat, 03 Apr 2021 11:11:01: 3000000 INFO @ Sat, 03 Apr 2021 11:11:09: 7000000 INFO @ Sat, 03 Apr 2021 11:11:11: 9000000 INFO @ Sat, 03 Apr 2021 11:11:12: 4000000 INFO @ Sat, 03 Apr 2021 11:11:19: 8000000 INFO @ Sat, 03 Apr 2021 11:11:23: 5000000 INFO @ Sat, 03 Apr 2021 11:11:25: 10000000 INFO @ Sat, 03 Apr 2021 11:11:30: 9000000 INFO @ Sat, 03 Apr 2021 11:11:34: 6000000 INFO @ Sat, 03 Apr 2021 11:11:40: 11000000 INFO @ Sat, 03 Apr 2021 11:11:41: 10000000 INFO @ Sat, 03 Apr 2021 11:11:45: 7000000 INFO @ Sat, 03 Apr 2021 11:11:52: 11000000 INFO @ Sat, 03 Apr 2021 11:11:55: 12000000 INFO @ Sat, 03 Apr 2021 11:11:57: 8000000 INFO @ Sat, 03 Apr 2021 11:12:04: 12000000 INFO @ Sat, 03 Apr 2021 11:12:07: 13000000 INFO @ Sat, 03 Apr 2021 11:12:08: 9000000 INFO @ Sat, 03 Apr 2021 11:12:15: 13000000 INFO @ Sat, 03 Apr 2021 11:12:18: 10000000 INFO @ Sat, 03 Apr 2021 11:12:19: 14000000 INFO @ Sat, 03 Apr 2021 11:12:27: 14000000 INFO @ Sat, 03 Apr 2021 11:12:29: 11000000 INFO @ Sat, 03 Apr 2021 11:12:30: 15000000 INFO @ Sat, 03 Apr 2021 11:12:38: 15000000 INFO @ Sat, 03 Apr 2021 11:12:41: 12000000 INFO @ Sat, 03 Apr 2021 11:12:41: 16000000 INFO @ Sat, 03 Apr 2021 11:12:50: 16000000 INFO @ Sat, 03 Apr 2021 11:12:52: 13000000 INFO @ Sat, 03 Apr 2021 11:12:52: 17000000 INFO @ Sat, 03 Apr 2021 11:13:00: 17000000 INFO @ Sat, 03 Apr 2021 11:13:02: 14000000 INFO @ Sat, 03 Apr 2021 11:13:07: 18000000 INFO @ Sat, 03 Apr 2021 11:13:10: 18000000 INFO @ Sat, 03 Apr 2021 11:13:14: 15000000 INFO @ Sat, 03 Apr 2021 11:13:20: 19000000 INFO @ Sat, 03 Apr 2021 11:13:22: 19000000 INFO @ Sat, 03 Apr 2021 11:13:26: 16000000 INFO @ Sat, 03 Apr 2021 11:13:30: 20000000 INFO @ Sat, 03 Apr 2021 11:13:36: 17000000 INFO @ Sat, 03 Apr 2021 11:13:37: 20000000 INFO @ Sat, 03 Apr 2021 11:13:39: 21000000 INFO @ Sat, 03 Apr 2021 11:13:48: 18000000 INFO @ Sat, 03 Apr 2021 11:13:50: 22000000 INFO @ Sat, 03 Apr 2021 11:13:52: 21000000 INFO @ Sat, 03 Apr 2021 11:13:59: 19000000 INFO @ Sat, 03 Apr 2021 11:14:00: 23000000 INFO @ Sat, 03 Apr 2021 11:14:07: 22000000 INFO @ Sat, 03 Apr 2021 11:14:10: 24000000 INFO @ Sat, 03 Apr 2021 11:14:10: 20000000 INFO @ Sat, 03 Apr 2021 11:14:21: 21000000 INFO @ Sat, 03 Apr 2021 11:14:21: 25000000 INFO @ Sat, 03 Apr 2021 11:14:22: 23000000 INFO @ Sat, 03 Apr 2021 11:14:32: 26000000 INFO @ Sat, 03 Apr 2021 11:14:32: 24000000 INFO @ Sat, 03 Apr 2021 11:14:33: 22000000 INFO @ Sat, 03 Apr 2021 11:14:42: 25000000 INFO @ Sat, 03 Apr 2021 11:14:42: 27000000 INFO @ Sat, 03 Apr 2021 11:14:47: 23000000 INFO @ Sat, 03 Apr 2021 11:14:52: 28000000 INFO @ Sat, 03 Apr 2021 11:14:53: 26000000 INFO @ Sat, 03 Apr 2021 11:14:58: 24000000 INFO @ Sat, 03 Apr 2021 11:15:02: 29000000 INFO @ Sat, 03 Apr 2021 11:15:04: 27000000 INFO @ Sat, 03 Apr 2021 11:15:08: 25000000 INFO @ Sat, 03 Apr 2021 11:15:12: 30000000 INFO @ Sat, 03 Apr 2021 11:15:17: 28000000 INFO @ Sat, 03 Apr 2021 11:15:20: 26000000 INFO @ Sat, 03 Apr 2021 11:15:22: 31000000 INFO @ Sat, 03 Apr 2021 11:15:29: 29000000 INFO @ Sat, 03 Apr 2021 11:15:31: 27000000 INFO @ Sat, 03 Apr 2021 11:15:32: 32000000 INFO @ Sat, 03 Apr 2021 11:15:41: 30000000 INFO @ Sat, 03 Apr 2021 11:15:42: 28000000 INFO @ Sat, 03 Apr 2021 11:15:43: 33000000 INFO @ Sat, 03 Apr 2021 11:15:53: 34000000 INFO @ Sat, 03 Apr 2021 11:15:54: 31000000 INFO @ Sat, 03 Apr 2021 11:15:55: 29000000 INFO @ Sat, 03 Apr 2021 11:16:03: 35000000 INFO @ Sat, 03 Apr 2021 11:16:06: 32000000 INFO @ Sat, 03 Apr 2021 11:16:08: 30000000 INFO @ Sat, 03 Apr 2021 11:16:13: 36000000 INFO @ Sat, 03 Apr 2021 11:16:16: 33000000 INFO @ Sat, 03 Apr 2021 11:16:24: 31000000 INFO @ Sat, 03 Apr 2021 11:16:26: 37000000 INFO @ Sat, 03 Apr 2021 11:16:28: 34000000 INFO @ Sat, 03 Apr 2021 11:16:37: 38000000 INFO @ Sat, 03 Apr 2021 11:16:38: 32000000 INFO @ Sat, 03 Apr 2021 11:16:38: 35000000 INFO @ Sat, 03 Apr 2021 11:16:48: 39000000 INFO @ Sat, 03 Apr 2021 11:16:50: 36000000 INFO @ Sat, 03 Apr 2021 11:16:52: 33000000 INFO @ Sat, 03 Apr 2021 11:16:58: 40000000 INFO @ Sat, 03 Apr 2021 11:17:02: 37000000 INFO @ Sat, 03 Apr 2021 11:17:04: 34000000 INFO @ Sat, 03 Apr 2021 11:17:08: 41000000 INFO @ Sat, 03 Apr 2021 11:17:15: 38000000 INFO @ Sat, 03 Apr 2021 11:17:16: 35000000 INFO @ Sat, 03 Apr 2021 11:17:19: 42000000 INFO @ Sat, 03 Apr 2021 11:17:27: 39000000 INFO @ Sat, 03 Apr 2021 11:17:28: 36000000 INFO @ Sat, 03 Apr 2021 11:17:30: 43000000 INFO @ Sat, 03 Apr 2021 11:17:39: 40000000 INFO @ Sat, 03 Apr 2021 11:17:40: 37000000 INFO @ Sat, 03 Apr 2021 11:17:41: 44000000 INFO @ Sat, 03 Apr 2021 11:17:51: 45000000 INFO @ Sat, 03 Apr 2021 11:17:51: 41000000 INFO @ Sat, 03 Apr 2021 11:17:53: 38000000 INFO @ Sat, 03 Apr 2021 11:18:01: 46000000 INFO @ Sat, 03 Apr 2021 11:18:03: 42000000 INFO @ Sat, 03 Apr 2021 11:18:04: 39000000 INFO @ Sat, 03 Apr 2021 11:18:12: 47000000 INFO @ Sat, 03 Apr 2021 11:18:14: 43000000 INFO @ Sat, 03 Apr 2021 11:18:16: 40000000 INFO @ Sat, 03 Apr 2021 11:18:20: 48000000 INFO @ Sat, 03 Apr 2021 11:18:26: 44000000 INFO @ Sat, 03 Apr 2021 11:18:28: 41000000 INFO @ Sat, 03 Apr 2021 11:18:30: 49000000 INFO @ Sat, 03 Apr 2021 11:18:38: 45000000 INFO @ Sat, 03 Apr 2021 11:18:40: 42000000 INFO @ Sat, 03 Apr 2021 11:18:41: 50000000 INFO @ Sat, 03 Apr 2021 11:18:50: 46000000 INFO @ Sat, 03 Apr 2021 11:18:51: 43000000 INFO @ Sat, 03 Apr 2021 11:18:51: 51000000 INFO @ Sat, 03 Apr 2021 11:19:02: 52000000 INFO @ Sat, 03 Apr 2021 11:19:03: 47000000 INFO @ Sat, 03 Apr 2021 11:19:05: 44000000 INFO @ Sat, 03 Apr 2021 11:19:12: 53000000 INFO @ Sat, 03 Apr 2021 11:19:15: 48000000 INFO @ Sat, 03 Apr 2021 11:19:17: 45000000 INFO @ Sat, 03 Apr 2021 11:19:22: 54000000 INFO @ Sat, 03 Apr 2021 11:19:27: 49000000 INFO @ Sat, 03 Apr 2021 11:19:29: 46000000 INFO @ Sat, 03 Apr 2021 11:19:33: 55000000 INFO @ Sat, 03 Apr 2021 11:19:39: 50000000 INFO @ Sat, 03 Apr 2021 11:19:40: 47000000 INFO @ Sat, 03 Apr 2021 11:19:42: 56000000 INFO @ Sat, 03 Apr 2021 11:19:51: 48000000 INFO @ Sat, 03 Apr 2021 11:19:51: 51000000 INFO @ Sat, 03 Apr 2021 11:19:53: 57000000 INFO @ Sat, 03 Apr 2021 11:20:01: 58000000 INFO @ Sat, 03 Apr 2021 11:20:02: 52000000 INFO @ Sat, 03 Apr 2021 11:20:03: 49000000 INFO @ Sat, 03 Apr 2021 11:20:11: 59000000 INFO @ Sat, 03 Apr 2021 11:20:14: 50000000 INFO @ Sat, 03 Apr 2021 11:20:15: 53000000 INFO @ Sat, 03 Apr 2021 11:20:21: 60000000 INFO @ Sat, 03 Apr 2021 11:20:25: 51000000 INFO @ Sat, 03 Apr 2021 11:20:28: 54000000 INFO @ Sat, 03 Apr 2021 11:20:30: 61000000 INFO @ Sat, 03 Apr 2021 11:20:36: 52000000 INFO @ Sat, 03 Apr 2021 11:20:40: 62000000 INFO @ Sat, 03 Apr 2021 11:20:43: 55000000 INFO @ Sat, 03 Apr 2021 11:20:47: 53000000 INFO @ Sat, 03 Apr 2021 11:20:50: 63000000 INFO @ Sat, 03 Apr 2021 11:20:58: 56000000 INFO @ Sat, 03 Apr 2021 11:20:58: 54000000 INFO @ Sat, 03 Apr 2021 11:21:00: 64000000 INFO @ Sat, 03 Apr 2021 11:21:09: 55000000 INFO @ Sat, 03 Apr 2021 11:21:11: 65000000 INFO @ Sat, 03 Apr 2021 11:21:12: 57000000 INFO @ Sat, 03 Apr 2021 11:21:19: 56000000 INFO @ Sat, 03 Apr 2021 11:21:22: 66000000 INFO @ Sat, 03 Apr 2021 11:21:24: 58000000 INFO @ Sat, 03 Apr 2021 11:21:30: 57000000 INFO @ Sat, 03 Apr 2021 11:21:31: 67000000 INFO @ Sat, 03 Apr 2021 11:21:34: 59000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 11:21:39: 68000000 INFO @ Sat, 03 Apr 2021 11:21:39: 58000000 INFO @ Sat, 03 Apr 2021 11:21:43: 60000000 INFO @ Sat, 03 Apr 2021 11:21:48: 69000000 INFO @ Sat, 03 Apr 2021 11:21:49: 59000000 INFO @ Sat, 03 Apr 2021 11:21:53: 61000000 INFO @ Sat, 03 Apr 2021 11:21:56: 70000000 INFO @ Sat, 03 Apr 2021 11:21:59: 60000000 INFO @ Sat, 03 Apr 2021 11:22:02: 62000000 INFO @ Sat, 03 Apr 2021 11:22:04: 71000000 INFO @ Sat, 03 Apr 2021 11:22:09: 61000000 INFO @ Sat, 03 Apr 2021 11:22:12: 63000000 INFO @ Sat, 03 Apr 2021 11:22:12: 72000000 INFO @ Sat, 03 Apr 2021 11:22:18: 62000000 INFO @ Sat, 03 Apr 2021 11:22:21: 73000000 INFO @ Sat, 03 Apr 2021 11:22:22: 64000000 INFO @ Sat, 03 Apr 2021 11:22:28: 63000000 INFO @ Sat, 03 Apr 2021 11:22:29: 74000000 INFO @ Sat, 03 Apr 2021 11:22:31: 65000000 INFO @ Sat, 03 Apr 2021 11:22:37: 75000000 INFO @ Sat, 03 Apr 2021 11:22:38: 64000000 INFO @ Sat, 03 Apr 2021 11:22:43: 66000000 INFO @ Sat, 03 Apr 2021 11:22:45: 76000000 INFO @ Sat, 03 Apr 2021 11:22:46: 65000000 INFO @ Sat, 03 Apr 2021 11:22:53: 67000000 INFO @ Sat, 03 Apr 2021 11:22:53: 77000000 INFO @ Sat, 03 Apr 2021 11:22:54: 66000000 INFO @ Sat, 03 Apr 2021 11:23:01: 78000000 INFO @ Sat, 03 Apr 2021 11:23:03: 67000000 INFO @ Sat, 03 Apr 2021 11:23:03: 68000000 BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 11:23:09: 79000000 INFO @ Sat, 03 Apr 2021 11:23:10: #1 tag size is determined as 150 bps INFO @ Sat, 03 Apr 2021 11:23:10: #1 tag size = 150 INFO @ Sat, 03 Apr 2021 11:23:10: #1 total tags in treatment: 28277060 INFO @ Sat, 03 Apr 2021 11:23:10: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 11:23:10: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 11:23:11: 68000000 INFO @ Sat, 03 Apr 2021 11:23:11: #1 tags after filtering in treatment: 17159630 INFO @ Sat, 03 Apr 2021 11:23:11: #1 Redundant rate of treatment: 0.39 INFO @ Sat, 03 Apr 2021 11:23:11: #1 finished! INFO @ Sat, 03 Apr 2021 11:23:11: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 11:23:11: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 11:23:12: #2 number of paired peaks: 274 WARNING @ Sat, 03 Apr 2021 11:23:12: Fewer paired peaks (274) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 274 pairs to build model! INFO @ Sat, 03 Apr 2021 11:23:12: start model_add_line... INFO @ Sat, 03 Apr 2021 11:23:12: start X-correlation... INFO @ Sat, 03 Apr 2021 11:23:12: end of X-cor INFO @ Sat, 03 Apr 2021 11:23:12: #2 finished! INFO @ Sat, 03 Apr 2021 11:23:12: #2 predicted fragment length is 167 bps INFO @ Sat, 03 Apr 2021 11:23:12: #2 alternative fragment length(s) may be 167 bps INFO @ Sat, 03 Apr 2021 11:23:12: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX7246274/SRX7246274.10_model.r WARNING @ Sat, 03 Apr 2021 11:23:12: #2 Since the d (167) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 11:23:12: #2 You may need to consider one of the other alternative d(s): 167 WARNING @ Sat, 03 Apr 2021 11:23:12: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 11:23:12: #3 Call peaks... INFO @ Sat, 03 Apr 2021 11:23:13: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 11:23:13: 69000000 INFO @ Sat, 03 Apr 2021 11:23:19: 69000000 INFO @ Sat, 03 Apr 2021 11:23:23: 70000000 INFO @ Sat, 03 Apr 2021 11:23:27: 70000000 INFO @ Sat, 03 Apr 2021 11:23:31: 71000000 INFO @ Sat, 03 Apr 2021 11:23:35: 71000000 INFO @ Sat, 03 Apr 2021 11:23:39: 72000000 INFO @ Sat, 03 Apr 2021 11:23:43: 72000000 INFO @ Sat, 03 Apr 2021 11:23:47: 73000000 INFO @ Sat, 03 Apr 2021 11:23:48: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 11:23:51: 73000000 INFO @ Sat, 03 Apr 2021 11:23:55: 74000000 INFO @ Sat, 03 Apr 2021 11:23:59: 74000000 INFO @ Sat, 03 Apr 2021 11:24:02: 75000000 INFO @ Sat, 03 Apr 2021 11:24:04: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX7246274/SRX7246274.10_peaks.xls INFO @ Sat, 03 Apr 2021 11:24:04: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX7246274/SRX7246274.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 11:24:04: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX7246274/SRX7246274.10_summits.bed INFO @ Sat, 03 Apr 2021 11:24:04: Done! pass1 - making usageList (7 chroms): 2 millis pass2 - checking and writing primary data (4239 records, 4 fields): 6 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 11:24:06: 75000000 INFO @ Sat, 03 Apr 2021 11:24:10: 76000000 INFO @ Sat, 03 Apr 2021 11:24:14: 76000000 INFO @ Sat, 03 Apr 2021 11:24:18: 77000000 INFO @ Sat, 03 Apr 2021 11:24:21: 77000000 INFO @ Sat, 03 Apr 2021 11:24:25: 78000000 INFO @ Sat, 03 Apr 2021 11:24:29: 78000000 INFO @ Sat, 03 Apr 2021 11:24:32: 79000000 INFO @ Sat, 03 Apr 2021 11:24:33: #1 tag size is determined as 150 bps INFO @ Sat, 03 Apr 2021 11:24:33: #1 tag size = 150 INFO @ Sat, 03 Apr 2021 11:24:33: #1 total tags in treatment: 28277060 INFO @ Sat, 03 Apr 2021 11:24:33: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 11:24:33: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 11:24:34: #1 tags after filtering in treatment: 17159630 INFO @ Sat, 03 Apr 2021 11:24:34: #1 Redundant rate of treatment: 0.39 INFO @ Sat, 03 Apr 2021 11:24:34: #1 finished! INFO @ Sat, 03 Apr 2021 11:24:34: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 11:24:34: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 11:24:35: #2 number of paired peaks: 274 WARNING @ Sat, 03 Apr 2021 11:24:35: Fewer paired peaks (274) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 274 pairs to build model! INFO @ Sat, 03 Apr 2021 11:24:35: start model_add_line... INFO @ Sat, 03 Apr 2021 11:24:36: start X-correlation... INFO @ Sat, 03 Apr 2021 11:24:36: end of X-cor INFO @ Sat, 03 Apr 2021 11:24:36: #2 finished! INFO @ Sat, 03 Apr 2021 11:24:36: #2 predicted fragment length is 167 bps INFO @ Sat, 03 Apr 2021 11:24:36: #2 alternative fragment length(s) may be 167 bps INFO @ Sat, 03 Apr 2021 11:24:36: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX7246274/SRX7246274.05_model.r WARNING @ Sat, 03 Apr 2021 11:24:36: #2 Since the d (167) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 11:24:36: #2 You may need to consider one of the other alternative d(s): 167 WARNING @ Sat, 03 Apr 2021 11:24:36: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 11:24:36: #3 Call peaks... INFO @ Sat, 03 Apr 2021 11:24:36: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 11:24:36: 79000000 INFO @ Sat, 03 Apr 2021 11:24:37: #1 tag size is determined as 150 bps INFO @ Sat, 03 Apr 2021 11:24:37: #1 tag size = 150 INFO @ Sat, 03 Apr 2021 11:24:37: #1 total tags in treatment: 28277060 INFO @ Sat, 03 Apr 2021 11:24:37: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 11:24:37: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 11:24:37: #1 tags after filtering in treatment: 17159630 INFO @ Sat, 03 Apr 2021 11:24:37: #1 Redundant rate of treatment: 0.39 INFO @ Sat, 03 Apr 2021 11:24:37: #1 finished! INFO @ Sat, 03 Apr 2021 11:24:37: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 11:24:37: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 11:24:38: #2 number of paired peaks: 274 WARNING @ Sat, 03 Apr 2021 11:24:38: Fewer paired peaks (274) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 274 pairs to build model! INFO @ Sat, 03 Apr 2021 11:24:38: start model_add_line... INFO @ Sat, 03 Apr 2021 11:24:39: start X-correlation... INFO @ Sat, 03 Apr 2021 11:24:39: end of X-cor INFO @ Sat, 03 Apr 2021 11:24:39: #2 finished! INFO @ Sat, 03 Apr 2021 11:24:39: #2 predicted fragment length is 167 bps INFO @ Sat, 03 Apr 2021 11:24:39: #2 alternative fragment length(s) may be 167 bps INFO @ Sat, 03 Apr 2021 11:24:39: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX7246274/SRX7246274.20_model.r WARNING @ Sat, 03 Apr 2021 11:24:39: #2 Since the d (167) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 11:24:39: #2 You may need to consider one of the other alternative d(s): 167 WARNING @ Sat, 03 Apr 2021 11:24:39: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 11:24:39: #3 Call peaks... INFO @ Sat, 03 Apr 2021 11:24:39: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 11:25:10: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 11:25:13: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 11:25:26: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX7246274/SRX7246274.05_peaks.xls INFO @ Sat, 03 Apr 2021 11:25:26: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX7246274/SRX7246274.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 11:25:26: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX7246274/SRX7246274.05_summits.bed INFO @ Sat, 03 Apr 2021 11:25:26: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (6969 records, 4 fields): 10 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 11:25:28: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX7246274/SRX7246274.20_peaks.xls INFO @ Sat, 03 Apr 2021 11:25:28: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX7246274/SRX7246274.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 11:25:28: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX7246274/SRX7246274.20_summits.bed INFO @ Sat, 03 Apr 2021 11:25:28: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (1910 records, 4 fields): 4 millis CompletedMACS2peakCalling