Job ID = 5720219 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-04-15T12:32:21 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T12:52:06 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T12:32:21 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T12:52:06 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T12:52:06 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T12:54:16 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T12:54:16 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T12:58:06 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:02:50 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:16:03 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:28:03 fasterq-dump.2.9.6 sys: error unknown while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:28:59 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:35:51 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:37:58 fasterq-dump.2.9.6 sys: error unknown while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:46:07 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:47:32 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:49:26 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T14:06:15 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 55,365,152 reads read : 110,730,304 reads written : 110,730,304 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:43:10 55365152 reads; of these: 55365152 (100.00%) were paired; of these: 17146620 (30.97%) aligned concordantly 0 times 32071467 (57.93%) aligned concordantly exactly 1 time 6147065 (11.10%) aligned concordantly >1 times ---- 17146620 pairs aligned concordantly 0 times; of these: 10475187 (61.09%) aligned discordantly 1 time ---- 6671433 pairs aligned 0 times concordantly or discordantly; of these: 13342866 mates make up the pairs; of these: 7959001 (59.65%) aligned 0 times 2132459 (15.98%) aligned exactly 1 time 3251406 (24.37%) aligned >1 times 92.81% overall alignment rate Time searching: 01:43:10 Overall time: 01:43:10 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 76 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 7505350 / 48361188 = 0.1552 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 01:31:22: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX6619591/SRX6619591.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX6619591/SRX6619591.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX6619591/SRX6619591.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX6619591/SRX6619591.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 01:31:22: #1 read tag files... INFO @ Thu, 16 Apr 2020 01:31:22: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 01:31:30: 1000000 INFO @ Thu, 16 Apr 2020 01:31:38: 2000000 INFO @ Thu, 16 Apr 2020 01:31:47: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 01:31:52: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX6619591/SRX6619591.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX6619591/SRX6619591.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX6619591/SRX6619591.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX6619591/SRX6619591.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 01:31:52: #1 read tag files... INFO @ Thu, 16 Apr 2020 01:31:52: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 01:31:55: 4000000 INFO @ Thu, 16 Apr 2020 01:32:01: 1000000 INFO @ Thu, 16 Apr 2020 01:32:04: 5000000 INFO @ Thu, 16 Apr 2020 01:32:09: 2000000 INFO @ Thu, 16 Apr 2020 01:32:12: 6000000 INFO @ Thu, 16 Apr 2020 01:32:18: 3000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 01:32:21: 7000000 INFO @ Thu, 16 Apr 2020 01:32:22: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX6619591/SRX6619591.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX6619591/SRX6619591.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX6619591/SRX6619591.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX6619591/SRX6619591.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 01:32:22: #1 read tag files... INFO @ Thu, 16 Apr 2020 01:32:22: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 01:32:27: 4000000 INFO @ Thu, 16 Apr 2020 01:32:29: 8000000 INFO @ Thu, 16 Apr 2020 01:32:30: 1000000 INFO @ Thu, 16 Apr 2020 01:32:36: 5000000 INFO @ Thu, 16 Apr 2020 01:32:37: 2000000 INFO @ Thu, 16 Apr 2020 01:32:38: 9000000 INFO @ Thu, 16 Apr 2020 01:32:45: 3000000 INFO @ Thu, 16 Apr 2020 01:32:45: 6000000 INFO @ Thu, 16 Apr 2020 01:32:47: 10000000 INFO @ Thu, 16 Apr 2020 01:32:52: 4000000 INFO @ Thu, 16 Apr 2020 01:32:54: 7000000 INFO @ Thu, 16 Apr 2020 01:32:56: 11000000 INFO @ Thu, 16 Apr 2020 01:33:00: 5000000 INFO @ Thu, 16 Apr 2020 01:33:02: 8000000 INFO @ Thu, 16 Apr 2020 01:33:04: 12000000 INFO @ Thu, 16 Apr 2020 01:33:07: 6000000 INFO @ Thu, 16 Apr 2020 01:33:11: 9000000 INFO @ Thu, 16 Apr 2020 01:33:13: 13000000 INFO @ Thu, 16 Apr 2020 01:33:15: 7000000 INFO @ Thu, 16 Apr 2020 01:33:20: 10000000 INFO @ Thu, 16 Apr 2020 01:33:22: 8000000 INFO @ Thu, 16 Apr 2020 01:33:22: 14000000 INFO @ Thu, 16 Apr 2020 01:33:29: 11000000 INFO @ Thu, 16 Apr 2020 01:33:29: 9000000 INFO @ Thu, 16 Apr 2020 01:33:31: 15000000 INFO @ Thu, 16 Apr 2020 01:33:37: 10000000 INFO @ Thu, 16 Apr 2020 01:33:38: 12000000 INFO @ Thu, 16 Apr 2020 01:33:40: 16000000 INFO @ Thu, 16 Apr 2020 01:33:44: 11000000 INFO @ Thu, 16 Apr 2020 01:33:47: 13000000 INFO @ Thu, 16 Apr 2020 01:33:48: 17000000 INFO @ Thu, 16 Apr 2020 01:33:52: 12000000 INFO @ Thu, 16 Apr 2020 01:33:55: 14000000 INFO @ Thu, 16 Apr 2020 01:33:57: 18000000 INFO @ Thu, 16 Apr 2020 01:33:59: 13000000 INFO @ Thu, 16 Apr 2020 01:34:04: 15000000 INFO @ Thu, 16 Apr 2020 01:34:06: 19000000 INFO @ Thu, 16 Apr 2020 01:34:07: 14000000 INFO @ Thu, 16 Apr 2020 01:34:13: 16000000 INFO @ Thu, 16 Apr 2020 01:34:14: 15000000 INFO @ Thu, 16 Apr 2020 01:34:15: 20000000 INFO @ Thu, 16 Apr 2020 01:34:21: 16000000 INFO @ Thu, 16 Apr 2020 01:34:22: 17000000 INFO @ Thu, 16 Apr 2020 01:34:24: 21000000 INFO @ Thu, 16 Apr 2020 01:34:28: 17000000 INFO @ Thu, 16 Apr 2020 01:34:31: 18000000 INFO @ Thu, 16 Apr 2020 01:34:33: 22000000 INFO @ Thu, 16 Apr 2020 01:34:36: 18000000 INFO @ Thu, 16 Apr 2020 01:34:40: 19000000 INFO @ Thu, 16 Apr 2020 01:34:42: 23000000 INFO @ Thu, 16 Apr 2020 01:34:44: 19000000 INFO @ Thu, 16 Apr 2020 01:34:49: 20000000 INFO @ Thu, 16 Apr 2020 01:34:50: 24000000 INFO @ Thu, 16 Apr 2020 01:34:51: 20000000 INFO @ Thu, 16 Apr 2020 01:34:58: 21000000 INFO @ Thu, 16 Apr 2020 01:34:59: 25000000 INFO @ Thu, 16 Apr 2020 01:34:59: 21000000 INFO @ Thu, 16 Apr 2020 01:35:06: 26000000 INFO @ Thu, 16 Apr 2020 01:35:07: 22000000 INFO @ Thu, 16 Apr 2020 01:35:07: 22000000 INFO @ Thu, 16 Apr 2020 01:35:14: 27000000 INFO @ Thu, 16 Apr 2020 01:35:15: 23000000 INFO @ Thu, 16 Apr 2020 01:35:16: 23000000 INFO @ Thu, 16 Apr 2020 01:35:21: 28000000 INFO @ Thu, 16 Apr 2020 01:35:24: 24000000 INFO @ Thu, 16 Apr 2020 01:35:25: 24000000 INFO @ Thu, 16 Apr 2020 01:35:28: 29000000 INFO @ Thu, 16 Apr 2020 01:35:33: 25000000 INFO @ Thu, 16 Apr 2020 01:35:33: 25000000 INFO @ Thu, 16 Apr 2020 01:35:37: 30000000 INFO @ Thu, 16 Apr 2020 01:35:40: 26000000 INFO @ Thu, 16 Apr 2020 01:35:42: 26000000 INFO @ Thu, 16 Apr 2020 01:35:45: 31000000 INFO @ Thu, 16 Apr 2020 01:35:48: 27000000 INFO @ Thu, 16 Apr 2020 01:35:50: 27000000 INFO @ Thu, 16 Apr 2020 01:35:54: 32000000 INFO @ Thu, 16 Apr 2020 01:35:55: 28000000 INFO @ Thu, 16 Apr 2020 01:35:59: 28000000 INFO @ Thu, 16 Apr 2020 01:36:02: 33000000 INFO @ Thu, 16 Apr 2020 01:36:03: 29000000 INFO @ Thu, 16 Apr 2020 01:36:07: 29000000 INFO @ Thu, 16 Apr 2020 01:36:11: 34000000 INFO @ Thu, 16 Apr 2020 01:36:11: 30000000 INFO @ Thu, 16 Apr 2020 01:36:14: 30000000 INFO @ Thu, 16 Apr 2020 01:36:19: 35000000 INFO @ Thu, 16 Apr 2020 01:36:20: 31000000 INFO @ Thu, 16 Apr 2020 01:36:22: 31000000 INFO @ Thu, 16 Apr 2020 01:36:28: 36000000 INFO @ Thu, 16 Apr 2020 01:36:29: 32000000 INFO @ Thu, 16 Apr 2020 01:36:29: 32000000 INFO @ Thu, 16 Apr 2020 01:36:36: 37000000 INFO @ Thu, 16 Apr 2020 01:36:37: 33000000 INFO @ Thu, 16 Apr 2020 01:36:38: 33000000 INFO @ Thu, 16 Apr 2020 01:36:45: 38000000 INFO @ Thu, 16 Apr 2020 01:36:46: 34000000 INFO @ Thu, 16 Apr 2020 01:36:47: 34000000 INFO @ Thu, 16 Apr 2020 01:36:53: 39000000 INFO @ Thu, 16 Apr 2020 01:36:54: 35000000 INFO @ Thu, 16 Apr 2020 01:36:55: 35000000 INFO @ Thu, 16 Apr 2020 01:37:02: 40000000 INFO @ Thu, 16 Apr 2020 01:37:03: 36000000 INFO @ Thu, 16 Apr 2020 01:37:04: 36000000 INFO @ Thu, 16 Apr 2020 01:37:10: 41000000 INFO @ Thu, 16 Apr 2020 01:37:12: 37000000 INFO @ Thu, 16 Apr 2020 01:37:12: 37000000 INFO @ Thu, 16 Apr 2020 01:37:19: 42000000 INFO @ Thu, 16 Apr 2020 01:37:20: 38000000 INFO @ Thu, 16 Apr 2020 01:37:21: 38000000 INFO @ Thu, 16 Apr 2020 01:37:27: 43000000 INFO @ Thu, 16 Apr 2020 01:37:29: 39000000 INFO @ Thu, 16 Apr 2020 01:37:30: 39000000 INFO @ Thu, 16 Apr 2020 01:37:36: 44000000 INFO @ Thu, 16 Apr 2020 01:37:38: 40000000 INFO @ Thu, 16 Apr 2020 01:37:38: 40000000 INFO @ Thu, 16 Apr 2020 01:37:44: 45000000 INFO @ Thu, 16 Apr 2020 01:37:46: 41000000 INFO @ Thu, 16 Apr 2020 01:37:47: 41000000 INFO @ Thu, 16 Apr 2020 01:37:53: 46000000 INFO @ Thu, 16 Apr 2020 01:37:55: 42000000 INFO @ Thu, 16 Apr 2020 01:37:55: 42000000 INFO @ Thu, 16 Apr 2020 01:38:01: 47000000 INFO @ Thu, 16 Apr 2020 01:38:03: 43000000 INFO @ Thu, 16 Apr 2020 01:38:04: 43000000 INFO @ Thu, 16 Apr 2020 01:38:10: 48000000 INFO @ Thu, 16 Apr 2020 01:38:12: 44000000 INFO @ Thu, 16 Apr 2020 01:38:13: 44000000 INFO @ Thu, 16 Apr 2020 01:38:18: 49000000 INFO @ Thu, 16 Apr 2020 01:38:20: 45000000 INFO @ Thu, 16 Apr 2020 01:38:21: 45000000 INFO @ Thu, 16 Apr 2020 01:38:27: 50000000 INFO @ Thu, 16 Apr 2020 01:38:29: 46000000 INFO @ Thu, 16 Apr 2020 01:38:30: 46000000 INFO @ Thu, 16 Apr 2020 01:38:35: 51000000 INFO @ Thu, 16 Apr 2020 01:38:38: 47000000 INFO @ Thu, 16 Apr 2020 01:38:38: 47000000 INFO @ Thu, 16 Apr 2020 01:38:44: 52000000 INFO @ Thu, 16 Apr 2020 01:38:46: 48000000 INFO @ Thu, 16 Apr 2020 01:38:47: 48000000 INFO @ Thu, 16 Apr 2020 01:38:52: 53000000 INFO @ Thu, 16 Apr 2020 01:38:55: 49000000 INFO @ Thu, 16 Apr 2020 01:38:56: 49000000 INFO @ Thu, 16 Apr 2020 01:39:01: 54000000 INFO @ Thu, 16 Apr 2020 01:39:04: 50000000 INFO @ Thu, 16 Apr 2020 01:39:04: 50000000 INFO @ Thu, 16 Apr 2020 01:39:09: 55000000 INFO @ Thu, 16 Apr 2020 01:39:12: 51000000 INFO @ Thu, 16 Apr 2020 01:39:13: 51000000 INFO @ Thu, 16 Apr 2020 01:39:18: 56000000 INFO @ Thu, 16 Apr 2020 01:39:21: 52000000 INFO @ Thu, 16 Apr 2020 01:39:22: 52000000 INFO @ Thu, 16 Apr 2020 01:39:27: 57000000 INFO @ Thu, 16 Apr 2020 01:39:29: 53000000 INFO @ Thu, 16 Apr 2020 01:39:30: 53000000 INFO @ Thu, 16 Apr 2020 01:39:36: 58000000 INFO @ Thu, 16 Apr 2020 01:39:38: 54000000 INFO @ Thu, 16 Apr 2020 01:39:39: 54000000 INFO @ Thu, 16 Apr 2020 01:39:45: 59000000 INFO @ Thu, 16 Apr 2020 01:39:47: 55000000 INFO @ Thu, 16 Apr 2020 01:39:48: 55000000 INFO @ Thu, 16 Apr 2020 01:39:53: 60000000 INFO @ Thu, 16 Apr 2020 01:39:56: 56000000 INFO @ Thu, 16 Apr 2020 01:39:57: 56000000 INFO @ Thu, 16 Apr 2020 01:40:02: 61000000 INFO @ Thu, 16 Apr 2020 01:40:05: 57000000 INFO @ Thu, 16 Apr 2020 01:40:06: 57000000 INFO @ Thu, 16 Apr 2020 01:40:10: 62000000 INFO @ Thu, 16 Apr 2020 01:40:14: 58000000 INFO @ Thu, 16 Apr 2020 01:40:15: 58000000 INFO @ Thu, 16 Apr 2020 01:40:18: 63000000 INFO @ Thu, 16 Apr 2020 01:40:23: 59000000 INFO @ Thu, 16 Apr 2020 01:40:23: 59000000 INFO @ Thu, 16 Apr 2020 01:40:27: 64000000 INFO @ Thu, 16 Apr 2020 01:40:31: 60000000 INFO @ Thu, 16 Apr 2020 01:40:32: 60000000 INFO @ Thu, 16 Apr 2020 01:40:35: 65000000 INFO @ Thu, 16 Apr 2020 01:40:40: 61000000 INFO @ Thu, 16 Apr 2020 01:40:40: 61000000 INFO @ Thu, 16 Apr 2020 01:40:44: 66000000 INFO @ Thu, 16 Apr 2020 01:40:48: 62000000 INFO @ Thu, 16 Apr 2020 01:40:49: 62000000 INFO @ Thu, 16 Apr 2020 01:40:52: 67000000 INFO @ Thu, 16 Apr 2020 01:40:57: 63000000 INFO @ Thu, 16 Apr 2020 01:40:58: 63000000 INFO @ Thu, 16 Apr 2020 01:41:01: 68000000 INFO @ Thu, 16 Apr 2020 01:41:06: 64000000 INFO @ Thu, 16 Apr 2020 01:41:06: 64000000 INFO @ Thu, 16 Apr 2020 01:41:09: 69000000 INFO @ Thu, 16 Apr 2020 01:41:14: 65000000 INFO @ Thu, 16 Apr 2020 01:41:15: 65000000 INFO @ Thu, 16 Apr 2020 01:41:17: 70000000 INFO @ Thu, 16 Apr 2020 01:41:23: 66000000 INFO @ Thu, 16 Apr 2020 01:41:23: 66000000 INFO @ Thu, 16 Apr 2020 01:41:26: 71000000 INFO @ Thu, 16 Apr 2020 01:41:31: 67000000 INFO @ Thu, 16 Apr 2020 01:41:32: 67000000 INFO @ Thu, 16 Apr 2020 01:41:35: 72000000 INFO @ Thu, 16 Apr 2020 01:41:40: 68000000 INFO @ Thu, 16 Apr 2020 01:41:40: 68000000 INFO @ Thu, 16 Apr 2020 01:41:44: 73000000 INFO @ Thu, 16 Apr 2020 01:41:48: 69000000 INFO @ Thu, 16 Apr 2020 01:41:49: 69000000 INFO @ Thu, 16 Apr 2020 01:41:53: 74000000 INFO @ Thu, 16 Apr 2020 01:41:57: 70000000 INFO @ Thu, 16 Apr 2020 01:41:57: 70000000 INFO @ Thu, 16 Apr 2020 01:42:01: 75000000 INFO @ Thu, 16 Apr 2020 01:42:05: 71000000 INFO @ Thu, 16 Apr 2020 01:42:06: 71000000 INFO @ Thu, 16 Apr 2020 01:42:09: 76000000 INFO @ Thu, 16 Apr 2020 01:42:14: 72000000 INFO @ Thu, 16 Apr 2020 01:42:15: 72000000 INFO @ Thu, 16 Apr 2020 01:42:18: 77000000 INFO @ Thu, 16 Apr 2020 01:42:23: 73000000 INFO @ Thu, 16 Apr 2020 01:42:24: 73000000 INFO @ Thu, 16 Apr 2020 01:42:26: 78000000 INFO @ Thu, 16 Apr 2020 01:42:32: 74000000 INFO @ Thu, 16 Apr 2020 01:42:33: 74000000 INFO @ Thu, 16 Apr 2020 01:42:35: 79000000 INFO @ Thu, 16 Apr 2020 01:42:41: 75000000 INFO @ Thu, 16 Apr 2020 01:42:41: 75000000 INFO @ Thu, 16 Apr 2020 01:42:43: 80000000 INFO @ Thu, 16 Apr 2020 01:42:49: 76000000 INFO @ Thu, 16 Apr 2020 01:42:50: 76000000 INFO @ Thu, 16 Apr 2020 01:42:51: 81000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Thu, 16 Apr 2020 01:42:58: 77000000 INFO @ Thu, 16 Apr 2020 01:42:58: 77000000 INFO @ Thu, 16 Apr 2020 01:43:00: 82000000 INFO @ Thu, 16 Apr 2020 01:43:06: 78000000 INFO @ Thu, 16 Apr 2020 01:43:07: 78000000 INFO @ Thu, 16 Apr 2020 01:43:08: 83000000 INFO @ Thu, 16 Apr 2020 01:43:15: 79000000 INFO @ Thu, 16 Apr 2020 01:43:16: 79000000 INFO @ Thu, 16 Apr 2020 01:43:16: 84000000 INFO @ Thu, 16 Apr 2020 01:43:23: 80000000 INFO @ Thu, 16 Apr 2020 01:43:24: 80000000 INFO @ Thu, 16 Apr 2020 01:43:25: 85000000 INFO @ Thu, 16 Apr 2020 01:43:32: 81000000 INFO @ Thu, 16 Apr 2020 01:43:32: 81000000 INFO @ Thu, 16 Apr 2020 01:43:33: 86000000 INFO @ Thu, 16 Apr 2020 01:43:40: 82000000 INFO @ Thu, 16 Apr 2020 01:43:41: 82000000 INFO @ Thu, 16 Apr 2020 01:43:42: 87000000 INFO @ Thu, 16 Apr 2020 01:43:48: #1 tag size is determined as 150 bps INFO @ Thu, 16 Apr 2020 01:43:48: #1 tag size = 150 INFO @ Thu, 16 Apr 2020 01:43:48: #1 total tags in treatment: 32129619 INFO @ Thu, 16 Apr 2020 01:43:48: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 01:43:48: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 01:43:49: #1 tags after filtering in treatment: 24659638 INFO @ Thu, 16 Apr 2020 01:43:49: #1 Redundant rate of treatment: 0.23 INFO @ Thu, 16 Apr 2020 01:43:49: #1 finished! INFO @ Thu, 16 Apr 2020 01:43:49: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 01:43:49: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 01:43:49: 83000000 INFO @ Thu, 16 Apr 2020 01:43:50: 83000000 INFO @ Thu, 16 Apr 2020 01:43:50: #2 number of paired peaks: 171 WARNING @ Thu, 16 Apr 2020 01:43:50: Fewer paired peaks (171) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 171 pairs to build model! INFO @ Thu, 16 Apr 2020 01:43:50: start model_add_line... INFO @ Thu, 16 Apr 2020 01:43:50: start X-correlation... INFO @ Thu, 16 Apr 2020 01:43:50: end of X-cor INFO @ Thu, 16 Apr 2020 01:43:50: #2 finished! INFO @ Thu, 16 Apr 2020 01:43:50: #2 predicted fragment length is 200 bps INFO @ Thu, 16 Apr 2020 01:43:50: #2 alternative fragment length(s) may be 3,188,200,220 bps INFO @ Thu, 16 Apr 2020 01:43:50: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX6619591/SRX6619591.05_model.r WARNING @ Thu, 16 Apr 2020 01:43:50: #2 Since the d (200) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Thu, 16 Apr 2020 01:43:50: #2 You may need to consider one of the other alternative d(s): 3,188,200,220 WARNING @ Thu, 16 Apr 2020 01:43:50: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Thu, 16 Apr 2020 01:43:50: #3 Call peaks... INFO @ Thu, 16 Apr 2020 01:43:50: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 01:43:57: 84000000 INFO @ Thu, 16 Apr 2020 01:43:58: 84000000 INFO @ Thu, 16 Apr 2020 01:44:06: 85000000 INFO @ Thu, 16 Apr 2020 01:44:06: 85000000 BigWig に変換しました。 INFO @ Thu, 16 Apr 2020 01:44:14: 86000000 INFO @ Thu, 16 Apr 2020 01:44:15: 86000000 INFO @ Thu, 16 Apr 2020 01:44:23: 87000000 INFO @ Thu, 16 Apr 2020 01:44:23: 87000000 INFO @ Thu, 16 Apr 2020 01:44:29: #1 tag size is determined as 150 bps INFO @ Thu, 16 Apr 2020 01:44:29: #1 tag size = 150 INFO @ Thu, 16 Apr 2020 01:44:29: #1 total tags in treatment: 32129619 INFO @ Thu, 16 Apr 2020 01:44:29: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 01:44:29: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 01:44:30: #1 tags after filtering in treatment: 24659638 INFO @ Thu, 16 Apr 2020 01:44:30: #1 Redundant rate of treatment: 0.23 INFO @ Thu, 16 Apr 2020 01:44:30: #1 finished! INFO @ Thu, 16 Apr 2020 01:44:30: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 01:44:30: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 01:44:30: #1 tag size is determined as 150 bps INFO @ Thu, 16 Apr 2020 01:44:30: #1 tag size = 150 INFO @ Thu, 16 Apr 2020 01:44:30: #1 total tags in treatment: 32129619 INFO @ Thu, 16 Apr 2020 01:44:30: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 01:44:30: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 01:44:31: #1 tags after filtering in treatment: 24659638 INFO @ Thu, 16 Apr 2020 01:44:31: #1 Redundant rate of treatment: 0.23 INFO @ Thu, 16 Apr 2020 01:44:31: #1 finished! INFO @ Thu, 16 Apr 2020 01:44:31: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 01:44:31: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 01:44:31: #2 number of paired peaks: 171 WARNING @ Thu, 16 Apr 2020 01:44:31: Fewer paired peaks (171) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 171 pairs to build model! INFO @ Thu, 16 Apr 2020 01:44:31: start model_add_line... INFO @ Thu, 16 Apr 2020 01:44:32: start X-correlation... INFO @ Thu, 16 Apr 2020 01:44:32: end of X-cor INFO @ Thu, 16 Apr 2020 01:44:32: #2 finished! INFO @ Thu, 16 Apr 2020 01:44:32: #2 predicted fragment length is 200 bps INFO @ Thu, 16 Apr 2020 01:44:32: #2 alternative fragment length(s) may be 3,188,200,220 bps INFO @ Thu, 16 Apr 2020 01:44:32: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX6619591/SRX6619591.10_model.r WARNING @ Thu, 16 Apr 2020 01:44:32: #2 Since the d (200) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Thu, 16 Apr 2020 01:44:32: #2 You may need to consider one of the other alternative d(s): 3,188,200,220 WARNING @ Thu, 16 Apr 2020 01:44:32: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Thu, 16 Apr 2020 01:44:32: #3 Call peaks... INFO @ Thu, 16 Apr 2020 01:44:32: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 01:44:32: #2 number of paired peaks: 171 WARNING @ Thu, 16 Apr 2020 01:44:32: Fewer paired peaks (171) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 171 pairs to build model! INFO @ Thu, 16 Apr 2020 01:44:32: start model_add_line... INFO @ Thu, 16 Apr 2020 01:44:32: start X-correlation... INFO @ Thu, 16 Apr 2020 01:44:32: end of X-cor INFO @ Thu, 16 Apr 2020 01:44:32: #2 finished! INFO @ Thu, 16 Apr 2020 01:44:32: #2 predicted fragment length is 200 bps INFO @ Thu, 16 Apr 2020 01:44:32: #2 alternative fragment length(s) may be 3,188,200,220 bps INFO @ Thu, 16 Apr 2020 01:44:32: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX6619591/SRX6619591.20_model.r WARNING @ Thu, 16 Apr 2020 01:44:32: #2 Since the d (200) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Thu, 16 Apr 2020 01:44:32: #2 You may need to consider one of the other alternative d(s): 3,188,200,220 WARNING @ Thu, 16 Apr 2020 01:44:32: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Thu, 16 Apr 2020 01:44:32: #3 Call peaks... INFO @ Thu, 16 Apr 2020 01:44:32: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 01:44:36: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 01:44:59: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX6619591/SRX6619591.05_peaks.xls INFO @ Thu, 16 Apr 2020 01:44:59: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX6619591/SRX6619591.05_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 01:44:59: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX6619591/SRX6619591.05_summits.bed INFO @ Thu, 16 Apr 2020 01:45:00: Done! pass1 - making usageList (7 chroms): 5 millis pass2 - checking and writing primary data (35659 records, 4 fields): 39 millis CompletedMACS2peakCalling INFO @ Thu, 16 Apr 2020 01:45:18: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 01:45:18: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 01:45:40: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX6619591/SRX6619591.20_peaks.xls INFO @ Thu, 16 Apr 2020 01:45:40: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX6619591/SRX6619591.20_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 01:45:40: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX6619591/SRX6619591.20_summits.bed INFO @ Thu, 16 Apr 2020 01:45:40: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (6242 records, 4 fields): 14 millis CompletedMACS2peakCalling INFO @ Thu, 16 Apr 2020 01:45:46: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX6619591/SRX6619591.10_peaks.xls INFO @ Thu, 16 Apr 2020 01:45:46: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX6619591/SRX6619591.10_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 01:45:46: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX6619591/SRX6619591.10_summits.bed INFO @ Thu, 16 Apr 2020 01:45:46: Done! pass1 - making usageList (7 chroms): 3 millis pass2 - checking and writing primary data (20951 records, 4 fields): 26 millis CompletedMACS2peakCalling