Job ID = 5720193 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-04-15T12:53:45 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T12:54:27 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:03:58 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:05:33 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 29,470,958 reads read : 58,941,916 reads written : 58,941,916 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:06:03 29470958 reads; of these: 29470958 (100.00%) were paired; of these: 12524302 (42.50%) aligned concordantly 0 times 12675623 (43.01%) aligned concordantly exactly 1 time 4271033 (14.49%) aligned concordantly >1 times ---- 12524302 pairs aligned concordantly 0 times; of these: 4847745 (38.71%) aligned discordantly 1 time ---- 7676557 pairs aligned 0 times concordantly or discordantly; of these: 15353114 mates make up the pairs; of these: 13088099 (85.25%) aligned 0 times 741034 (4.83%) aligned exactly 1 time 1523981 (9.93%) aligned >1 times 77.79% overall alignment rate Time searching: 01:06:03 Overall time: 01:06:03 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 36 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 2764890 / 21441378 = 0.1290 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Wed, 15 Apr 2020 23:44:14: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX6619563/SRX6619563.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX6619563/SRX6619563.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX6619563/SRX6619563.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX6619563/SRX6619563.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 15 Apr 2020 23:44:14: #1 read tag files... INFO @ Wed, 15 Apr 2020 23:44:14: #1 read treatment tags... INFO @ Wed, 15 Apr 2020 23:44:25: 1000000 INFO @ Wed, 15 Apr 2020 23:44:36: 2000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Wed, 15 Apr 2020 23:44:44: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX6619563/SRX6619563.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX6619563/SRX6619563.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX6619563/SRX6619563.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX6619563/SRX6619563.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 15 Apr 2020 23:44:44: #1 read tag files... INFO @ Wed, 15 Apr 2020 23:44:44: #1 read treatment tags... INFO @ Wed, 15 Apr 2020 23:44:47: 3000000 INFO @ Wed, 15 Apr 2020 23:44:57: 1000000 INFO @ Wed, 15 Apr 2020 23:45:00: 4000000 INFO @ Wed, 15 Apr 2020 23:45:09: 2000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Wed, 15 Apr 2020 23:45:13: 5000000 INFO @ Wed, 15 Apr 2020 23:45:14: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX6619563/SRX6619563.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX6619563/SRX6619563.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX6619563/SRX6619563.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX6619563/SRX6619563.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 15 Apr 2020 23:45:14: #1 read tag files... INFO @ Wed, 15 Apr 2020 23:45:14: #1 read treatment tags... INFO @ Wed, 15 Apr 2020 23:45:22: 3000000 INFO @ Wed, 15 Apr 2020 23:45:26: 6000000 INFO @ Wed, 15 Apr 2020 23:45:27: 1000000 INFO @ Wed, 15 Apr 2020 23:45:36: 4000000 INFO @ Wed, 15 Apr 2020 23:45:40: 7000000 INFO @ Wed, 15 Apr 2020 23:45:41: 2000000 INFO @ Wed, 15 Apr 2020 23:45:50: 5000000 INFO @ Wed, 15 Apr 2020 23:45:52: 8000000 INFO @ Wed, 15 Apr 2020 23:45:54: 3000000 INFO @ Wed, 15 Apr 2020 23:46:03: 6000000 INFO @ Wed, 15 Apr 2020 23:46:05: 9000000 INFO @ Wed, 15 Apr 2020 23:46:08: 4000000 INFO @ Wed, 15 Apr 2020 23:46:17: 7000000 INFO @ Wed, 15 Apr 2020 23:46:19: 10000000 INFO @ Wed, 15 Apr 2020 23:46:22: 5000000 INFO @ Wed, 15 Apr 2020 23:46:30: 8000000 INFO @ Wed, 15 Apr 2020 23:46:32: 11000000 INFO @ Wed, 15 Apr 2020 23:46:35: 6000000 INFO @ Wed, 15 Apr 2020 23:46:43: 9000000 INFO @ Wed, 15 Apr 2020 23:46:45: 12000000 INFO @ Wed, 15 Apr 2020 23:46:53: 7000000 INFO @ Wed, 15 Apr 2020 23:46:57: 10000000 INFO @ Wed, 15 Apr 2020 23:46:58: 13000000 INFO @ Wed, 15 Apr 2020 23:47:11: 14000000 INFO @ Wed, 15 Apr 2020 23:47:12: 11000000 INFO @ Wed, 15 Apr 2020 23:47:12: 8000000 INFO @ Wed, 15 Apr 2020 23:47:24: 15000000 INFO @ Wed, 15 Apr 2020 23:47:25: 12000000 INFO @ Wed, 15 Apr 2020 23:47:31: 9000000 INFO @ Wed, 15 Apr 2020 23:47:36: 16000000 INFO @ Wed, 15 Apr 2020 23:47:40: 13000000 INFO @ Wed, 15 Apr 2020 23:47:49: 17000000 INFO @ Wed, 15 Apr 2020 23:47:50: 10000000 INFO @ Wed, 15 Apr 2020 23:47:54: 14000000 INFO @ Wed, 15 Apr 2020 23:48:02: 18000000 INFO @ Wed, 15 Apr 2020 23:48:08: 15000000 INFO @ Wed, 15 Apr 2020 23:48:08: 11000000 INFO @ Wed, 15 Apr 2020 23:48:15: 19000000 INFO @ Wed, 15 Apr 2020 23:48:21: 16000000 INFO @ Wed, 15 Apr 2020 23:48:24: 12000000 INFO @ Wed, 15 Apr 2020 23:48:29: 20000000 INFO @ Wed, 15 Apr 2020 23:48:35: 17000000 INFO @ Wed, 15 Apr 2020 23:48:38: 13000000 INFO @ Wed, 15 Apr 2020 23:48:42: 21000000 INFO @ Wed, 15 Apr 2020 23:48:49: 18000000 INFO @ Wed, 15 Apr 2020 23:48:51: 14000000 INFO @ Wed, 15 Apr 2020 23:48:55: 22000000 INFO @ Wed, 15 Apr 2020 23:49:03: 15000000 INFO @ Wed, 15 Apr 2020 23:49:03: 19000000 INFO @ Wed, 15 Apr 2020 23:49:09: 23000000 INFO @ Wed, 15 Apr 2020 23:49:16: 16000000 INFO @ Wed, 15 Apr 2020 23:49:18: 20000000 INFO @ Wed, 15 Apr 2020 23:49:22: 24000000 INFO @ Wed, 15 Apr 2020 23:49:29: 17000000 INFO @ Wed, 15 Apr 2020 23:49:32: 21000000 INFO @ Wed, 15 Apr 2020 23:49:36: 25000000 INFO @ Wed, 15 Apr 2020 23:49:42: 18000000 INFO @ Wed, 15 Apr 2020 23:49:47: 22000000 INFO @ Wed, 15 Apr 2020 23:49:50: 26000000 INFO @ Wed, 15 Apr 2020 23:49:55: 19000000 INFO @ Wed, 15 Apr 2020 23:50:01: 23000000 INFO @ Wed, 15 Apr 2020 23:50:04: 27000000 INFO @ Wed, 15 Apr 2020 23:50:09: 20000000 INFO @ Wed, 15 Apr 2020 23:50:16: 24000000 INFO @ Wed, 15 Apr 2020 23:50:17: 28000000 INFO @ Wed, 15 Apr 2020 23:50:22: 21000000 INFO @ Wed, 15 Apr 2020 23:50:30: 25000000 INFO @ Wed, 15 Apr 2020 23:50:31: 29000000 INFO @ Wed, 15 Apr 2020 23:50:37: 22000000 INFO @ Wed, 15 Apr 2020 23:50:44: 26000000 INFO @ Wed, 15 Apr 2020 23:50:45: 30000000 INFO @ Wed, 15 Apr 2020 23:50:51: 23000000 INFO @ Wed, 15 Apr 2020 23:50:58: 27000000 INFO @ Wed, 15 Apr 2020 23:50:59: 31000000 INFO @ Wed, 15 Apr 2020 23:51:04: 24000000 INFO @ Wed, 15 Apr 2020 23:51:12: 28000000 INFO @ Wed, 15 Apr 2020 23:51:14: 32000000 INFO @ Wed, 15 Apr 2020 23:51:17: 25000000 INFO @ Wed, 15 Apr 2020 23:51:26: 29000000 INFO @ Wed, 15 Apr 2020 23:51:28: 33000000 INFO @ Wed, 15 Apr 2020 23:51:31: 26000000 INFO @ Wed, 15 Apr 2020 23:51:40: 30000000 INFO @ Wed, 15 Apr 2020 23:51:42: 34000000 INFO @ Wed, 15 Apr 2020 23:51:44: 27000000 INFO @ Wed, 15 Apr 2020 23:51:55: 31000000 INFO @ Wed, 15 Apr 2020 23:51:55: 35000000 INFO @ Wed, 15 Apr 2020 23:51:58: 28000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Wed, 15 Apr 2020 23:52:09: 36000000 INFO @ Wed, 15 Apr 2020 23:52:10: 32000000 INFO @ Wed, 15 Apr 2020 23:52:11: 29000000 INFO @ Wed, 15 Apr 2020 23:52:22: 37000000 INFO @ Wed, 15 Apr 2020 23:52:24: 33000000 INFO @ Wed, 15 Apr 2020 23:52:24: 30000000 INFO @ Wed, 15 Apr 2020 23:52:36: 38000000 INFO @ Wed, 15 Apr 2020 23:52:38: 31000000 INFO @ Wed, 15 Apr 2020 23:52:38: 34000000 INFO @ Wed, 15 Apr 2020 23:52:50: 39000000 INFO @ Wed, 15 Apr 2020 23:52:51: 32000000 INFO @ Wed, 15 Apr 2020 23:52:53: 35000000 BigWig に変換しました。 INFO @ Wed, 15 Apr 2020 23:53:04: 40000000 INFO @ Wed, 15 Apr 2020 23:53:05: 33000000 INFO @ Wed, 15 Apr 2020 23:53:07: 36000000 INFO @ Wed, 15 Apr 2020 23:53:08: #1 tag size is determined as 150 bps INFO @ Wed, 15 Apr 2020 23:53:08: #1 tag size = 150 INFO @ Wed, 15 Apr 2020 23:53:08: #1 total tags in treatment: 14602325 INFO @ Wed, 15 Apr 2020 23:53:08: #1 user defined the maximum tags... INFO @ Wed, 15 Apr 2020 23:53:08: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 15 Apr 2020 23:53:08: #1 tags after filtering in treatment: 11701853 INFO @ Wed, 15 Apr 2020 23:53:08: #1 Redundant rate of treatment: 0.20 INFO @ Wed, 15 Apr 2020 23:53:08: #1 finished! INFO @ Wed, 15 Apr 2020 23:53:08: #2 Build Peak Model... INFO @ Wed, 15 Apr 2020 23:53:08: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 15 Apr 2020 23:53:09: #2 number of paired peaks: 442 WARNING @ Wed, 15 Apr 2020 23:53:09: Fewer paired peaks (442) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 442 pairs to build model! INFO @ Wed, 15 Apr 2020 23:53:09: start model_add_line... INFO @ Wed, 15 Apr 2020 23:53:09: start X-correlation... INFO @ Wed, 15 Apr 2020 23:53:09: end of X-cor INFO @ Wed, 15 Apr 2020 23:53:09: #2 finished! INFO @ Wed, 15 Apr 2020 23:53:09: #2 predicted fragment length is 207 bps INFO @ Wed, 15 Apr 2020 23:53:09: #2 alternative fragment length(s) may be 207 bps INFO @ Wed, 15 Apr 2020 23:53:09: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX6619563/SRX6619563.05_model.r WARNING @ Wed, 15 Apr 2020 23:53:09: #2 Since the d (207) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Wed, 15 Apr 2020 23:53:09: #2 You may need to consider one of the other alternative d(s): 207 WARNING @ Wed, 15 Apr 2020 23:53:09: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Wed, 15 Apr 2020 23:53:09: #3 Call peaks... INFO @ Wed, 15 Apr 2020 23:53:09: #3 Pre-compute pvalue-qvalue table... INFO @ Wed, 15 Apr 2020 23:53:19: 34000000 INFO @ Wed, 15 Apr 2020 23:53:21: 37000000 INFO @ Wed, 15 Apr 2020 23:53:32: 35000000 INFO @ Wed, 15 Apr 2020 23:53:35: 38000000 INFO @ Wed, 15 Apr 2020 23:53:38: #3 Call peaks for each chromosome... INFO @ Wed, 15 Apr 2020 23:53:46: 36000000 INFO @ Wed, 15 Apr 2020 23:53:49: 39000000 INFO @ Wed, 15 Apr 2020 23:53:51: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX6619563/SRX6619563.05_peaks.xls INFO @ Wed, 15 Apr 2020 23:53:51: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX6619563/SRX6619563.05_peaks.narrowPeak INFO @ Wed, 15 Apr 2020 23:53:51: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX6619563/SRX6619563.05_summits.bed INFO @ Wed, 15 Apr 2020 23:53:51: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (702 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Wed, 15 Apr 2020 23:53:59: 37000000 INFO @ Wed, 15 Apr 2020 23:54:03: 40000000 INFO @ Wed, 15 Apr 2020 23:54:07: #1 tag size is determined as 150 bps INFO @ Wed, 15 Apr 2020 23:54:07: #1 tag size = 150 INFO @ Wed, 15 Apr 2020 23:54:07: #1 total tags in treatment: 14602325 INFO @ Wed, 15 Apr 2020 23:54:07: #1 user defined the maximum tags... INFO @ Wed, 15 Apr 2020 23:54:07: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 15 Apr 2020 23:54:08: #1 tags after filtering in treatment: 11701853 INFO @ Wed, 15 Apr 2020 23:54:08: #1 Redundant rate of treatment: 0.20 INFO @ Wed, 15 Apr 2020 23:54:08: #1 finished! INFO @ Wed, 15 Apr 2020 23:54:08: #2 Build Peak Model... INFO @ Wed, 15 Apr 2020 23:54:08: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 15 Apr 2020 23:54:09: #2 number of paired peaks: 442 WARNING @ Wed, 15 Apr 2020 23:54:09: Fewer paired peaks (442) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 442 pairs to build model! INFO @ Wed, 15 Apr 2020 23:54:09: start model_add_line... INFO @ Wed, 15 Apr 2020 23:54:09: start X-correlation... INFO @ Wed, 15 Apr 2020 23:54:09: end of X-cor INFO @ Wed, 15 Apr 2020 23:54:09: #2 finished! INFO @ Wed, 15 Apr 2020 23:54:09: #2 predicted fragment length is 207 bps INFO @ Wed, 15 Apr 2020 23:54:09: #2 alternative fragment length(s) may be 207 bps INFO @ Wed, 15 Apr 2020 23:54:09: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX6619563/SRX6619563.10_model.r WARNING @ Wed, 15 Apr 2020 23:54:09: #2 Since the d (207) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Wed, 15 Apr 2020 23:54:09: #2 You may need to consider one of the other alternative d(s): 207 WARNING @ Wed, 15 Apr 2020 23:54:09: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Wed, 15 Apr 2020 23:54:09: #3 Call peaks... INFO @ Wed, 15 Apr 2020 23:54:09: #3 Pre-compute pvalue-qvalue table... INFO @ Wed, 15 Apr 2020 23:54:11: 38000000 INFO @ Wed, 15 Apr 2020 23:54:26: 39000000 INFO @ Wed, 15 Apr 2020 23:54:36: #3 Call peaks for each chromosome... INFO @ Wed, 15 Apr 2020 23:54:37: 40000000 INFO @ Wed, 15 Apr 2020 23:54:41: #1 tag size is determined as 150 bps INFO @ Wed, 15 Apr 2020 23:54:41: #1 tag size = 150 INFO @ Wed, 15 Apr 2020 23:54:41: #1 total tags in treatment: 14602325 INFO @ Wed, 15 Apr 2020 23:54:41: #1 user defined the maximum tags... INFO @ Wed, 15 Apr 2020 23:54:41: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 15 Apr 2020 23:54:41: #1 tags after filtering in treatment: 11701853 INFO @ Wed, 15 Apr 2020 23:54:41: #1 Redundant rate of treatment: 0.20 INFO @ Wed, 15 Apr 2020 23:54:41: #1 finished! INFO @ Wed, 15 Apr 2020 23:54:41: #2 Build Peak Model... INFO @ Wed, 15 Apr 2020 23:54:41: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 15 Apr 2020 23:54:42: #2 number of paired peaks: 442 WARNING @ Wed, 15 Apr 2020 23:54:42: Fewer paired peaks (442) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 442 pairs to build model! INFO @ Wed, 15 Apr 2020 23:54:42: start model_add_line... INFO @ Wed, 15 Apr 2020 23:54:42: start X-correlation... INFO @ Wed, 15 Apr 2020 23:54:42: end of X-cor INFO @ Wed, 15 Apr 2020 23:54:42: #2 finished! INFO @ Wed, 15 Apr 2020 23:54:42: #2 predicted fragment length is 207 bps INFO @ Wed, 15 Apr 2020 23:54:42: #2 alternative fragment length(s) may be 207 bps INFO @ Wed, 15 Apr 2020 23:54:42: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX6619563/SRX6619563.20_model.r WARNING @ Wed, 15 Apr 2020 23:54:42: #2 Since the d (207) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Wed, 15 Apr 2020 23:54:42: #2 You may need to consider one of the other alternative d(s): 207 WARNING @ Wed, 15 Apr 2020 23:54:42: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Wed, 15 Apr 2020 23:54:42: #3 Call peaks... INFO @ Wed, 15 Apr 2020 23:54:42: #3 Pre-compute pvalue-qvalue table... INFO @ Wed, 15 Apr 2020 23:54:48: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX6619563/SRX6619563.10_peaks.xls INFO @ Wed, 15 Apr 2020 23:54:48: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX6619563/SRX6619563.10_peaks.narrowPeak INFO @ Wed, 15 Apr 2020 23:54:48: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX6619563/SRX6619563.10_summits.bed INFO @ Wed, 15 Apr 2020 23:54:48: Done! pass1 - making usageList (6 chroms): 0 millis pass2 - checking and writing primary data (436 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Wed, 15 Apr 2020 23:55:10: #3 Call peaks for each chromosome... INFO @ Wed, 15 Apr 2020 23:55:24: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX6619563/SRX6619563.20_peaks.xls INFO @ Wed, 15 Apr 2020 23:55:24: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX6619563/SRX6619563.20_peaks.narrowPeak INFO @ Wed, 15 Apr 2020 23:55:24: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX6619563/SRX6619563.20_summits.bed INFO @ Wed, 15 Apr 2020 23:55:24: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (286 records, 4 fields): 1 millis CompletedMACS2peakCalling