Job ID = 5720183 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... spots read : 40,624,508 reads read : 81,249,016 reads written : 81,249,016 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 02:03:29 40624508 reads; of these: 40624508 (100.00%) were paired; of these: 13365961 (32.90%) aligned concordantly 0 times 20769995 (51.13%) aligned concordantly exactly 1 time 6488552 (15.97%) aligned concordantly >1 times ---- 13365961 pairs aligned concordantly 0 times; of these: 7742309 (57.93%) aligned discordantly 1 time ---- 5623652 pairs aligned 0 times concordantly or discordantly; of these: 11247304 mates make up the pairs; of these: 5939696 (52.81%) aligned 0 times 1614020 (14.35%) aligned exactly 1 time 3693588 (32.84%) aligned >1 times 92.69% overall alignment rate Time searching: 02:03:29 Overall time: 02:03:29 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 56 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 5747741 / 34856941 = 0.1649 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 01:00:27: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX6619554/SRX6619554.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX6619554/SRX6619554.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX6619554/SRX6619554.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX6619554/SRX6619554.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 01:00:27: #1 read tag files... INFO @ Thu, 16 Apr 2020 01:00:27: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 01:00:35: 1000000 INFO @ Thu, 16 Apr 2020 01:00:44: 2000000 INFO @ Thu, 16 Apr 2020 01:00:53: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 01:00:57: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX6619554/SRX6619554.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX6619554/SRX6619554.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX6619554/SRX6619554.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX6619554/SRX6619554.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 01:00:57: #1 read tag files... INFO @ Thu, 16 Apr 2020 01:00:57: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 01:01:02: 4000000 INFO @ Thu, 16 Apr 2020 01:01:08: 1000000 INFO @ Thu, 16 Apr 2020 01:01:12: 5000000 INFO @ Thu, 16 Apr 2020 01:01:17: 2000000 INFO @ Thu, 16 Apr 2020 01:01:21: 6000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 01:01:27: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX6619554/SRX6619554.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX6619554/SRX6619554.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX6619554/SRX6619554.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX6619554/SRX6619554.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 01:01:27: #1 read tag files... INFO @ Thu, 16 Apr 2020 01:01:27: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 01:01:27: 3000000 INFO @ Thu, 16 Apr 2020 01:01:30: 7000000 INFO @ Thu, 16 Apr 2020 01:01:37: 4000000 INFO @ Thu, 16 Apr 2020 01:01:38: 1000000 INFO @ Thu, 16 Apr 2020 01:01:41: 8000000 INFO @ Thu, 16 Apr 2020 01:01:47: 5000000 INFO @ Thu, 16 Apr 2020 01:01:49: 2000000 INFO @ Thu, 16 Apr 2020 01:01:51: 9000000 INFO @ Thu, 16 Apr 2020 01:01:58: 6000000 INFO @ Thu, 16 Apr 2020 01:01:59: 3000000 INFO @ Thu, 16 Apr 2020 01:02:01: 10000000 INFO @ Thu, 16 Apr 2020 01:02:07: 7000000 INFO @ Thu, 16 Apr 2020 01:02:09: 4000000 INFO @ Thu, 16 Apr 2020 01:02:11: 11000000 INFO @ Thu, 16 Apr 2020 01:02:18: 8000000 INFO @ Thu, 16 Apr 2020 01:02:19: 5000000 INFO @ Thu, 16 Apr 2020 01:02:20: 12000000 INFO @ Thu, 16 Apr 2020 01:02:27: 9000000 INFO @ Thu, 16 Apr 2020 01:02:29: 6000000 INFO @ Thu, 16 Apr 2020 01:02:30: 13000000 INFO @ Thu, 16 Apr 2020 01:02:37: 10000000 INFO @ Thu, 16 Apr 2020 01:02:39: 7000000 INFO @ Thu, 16 Apr 2020 01:02:41: 14000000 INFO @ Thu, 16 Apr 2020 01:02:46: 11000000 INFO @ Thu, 16 Apr 2020 01:02:50: 8000000 INFO @ Thu, 16 Apr 2020 01:02:51: 15000000 INFO @ Thu, 16 Apr 2020 01:02:55: 12000000 INFO @ Thu, 16 Apr 2020 01:03:01: 9000000 INFO @ Thu, 16 Apr 2020 01:03:03: 16000000 INFO @ Thu, 16 Apr 2020 01:03:06: 13000000 INFO @ Thu, 16 Apr 2020 01:03:11: 10000000 INFO @ Thu, 16 Apr 2020 01:03:13: 17000000 INFO @ Thu, 16 Apr 2020 01:03:16: 14000000 INFO @ Thu, 16 Apr 2020 01:03:20: 11000000 INFO @ Thu, 16 Apr 2020 01:03:22: 18000000 INFO @ Thu, 16 Apr 2020 01:03:25: 15000000 INFO @ Thu, 16 Apr 2020 01:03:30: 12000000 INFO @ Thu, 16 Apr 2020 01:03:33: 19000000 INFO @ Thu, 16 Apr 2020 01:03:36: 16000000 INFO @ Thu, 16 Apr 2020 01:03:40: 13000000 INFO @ Thu, 16 Apr 2020 01:03:43: 20000000 INFO @ Thu, 16 Apr 2020 01:03:45: 17000000 INFO @ Thu, 16 Apr 2020 01:03:50: 14000000 INFO @ Thu, 16 Apr 2020 01:03:54: 21000000 INFO @ Thu, 16 Apr 2020 01:03:57: 18000000 INFO @ Thu, 16 Apr 2020 01:04:00: 15000000 INFO @ Thu, 16 Apr 2020 01:04:05: 22000000 INFO @ Thu, 16 Apr 2020 01:04:06: 19000000 INFO @ Thu, 16 Apr 2020 01:04:11: 16000000 INFO @ Thu, 16 Apr 2020 01:04:15: 23000000 INFO @ Thu, 16 Apr 2020 01:04:17: 20000000 INFO @ Thu, 16 Apr 2020 01:04:20: 17000000 INFO @ Thu, 16 Apr 2020 01:04:24: 24000000 INFO @ Thu, 16 Apr 2020 01:04:27: 21000000 INFO @ Thu, 16 Apr 2020 01:04:31: 18000000 INFO @ Thu, 16 Apr 2020 01:04:34: 25000000 INFO @ Thu, 16 Apr 2020 01:04:37: 22000000 INFO @ Thu, 16 Apr 2020 01:04:42: 19000000 INFO @ Thu, 16 Apr 2020 01:04:44: 26000000 INFO @ Thu, 16 Apr 2020 01:04:47: 23000000 INFO @ Thu, 16 Apr 2020 01:04:52: 20000000 INFO @ Thu, 16 Apr 2020 01:04:54: 27000000 INFO @ Thu, 16 Apr 2020 01:04:57: 24000000 INFO @ Thu, 16 Apr 2020 01:05:01: 21000000 INFO @ Thu, 16 Apr 2020 01:05:03: 28000000 INFO @ Thu, 16 Apr 2020 01:05:06: 25000000 INFO @ Thu, 16 Apr 2020 01:05:12: 22000000 INFO @ Thu, 16 Apr 2020 01:05:14: 29000000 INFO @ Thu, 16 Apr 2020 01:05:16: 26000000 INFO @ Thu, 16 Apr 2020 01:05:22: 23000000 INFO @ Thu, 16 Apr 2020 01:05:24: 30000000 INFO @ Thu, 16 Apr 2020 01:05:25: 27000000 INFO @ Thu, 16 Apr 2020 01:05:33: 24000000 INFO @ Thu, 16 Apr 2020 01:05:35: 31000000 INFO @ Thu, 16 Apr 2020 01:05:36: 28000000 INFO @ Thu, 16 Apr 2020 01:05:43: 25000000 INFO @ Thu, 16 Apr 2020 01:05:45: 32000000 INFO @ Thu, 16 Apr 2020 01:05:45: 29000000 INFO @ Thu, 16 Apr 2020 01:05:53: 26000000 INFO @ Thu, 16 Apr 2020 01:05:55: 33000000 INFO @ Thu, 16 Apr 2020 01:05:56: 30000000 INFO @ Thu, 16 Apr 2020 01:06:03: 27000000 INFO @ Thu, 16 Apr 2020 01:06:04: 34000000 INFO @ Thu, 16 Apr 2020 01:06:06: 31000000 INFO @ Thu, 16 Apr 2020 01:06:14: 28000000 INFO @ Thu, 16 Apr 2020 01:06:15: 35000000 INFO @ Thu, 16 Apr 2020 01:06:16: 32000000 INFO @ Thu, 16 Apr 2020 01:06:24: 29000000 INFO @ Thu, 16 Apr 2020 01:06:25: 36000000 INFO @ Thu, 16 Apr 2020 01:06:26: 33000000 INFO @ Thu, 16 Apr 2020 01:06:35: 30000000 INFO @ Thu, 16 Apr 2020 01:06:36: 37000000 INFO @ Thu, 16 Apr 2020 01:06:36: 34000000 INFO @ Thu, 16 Apr 2020 01:06:45: 31000000 INFO @ Thu, 16 Apr 2020 01:06:45: 38000000 INFO @ Thu, 16 Apr 2020 01:06:46: 35000000 INFO @ Thu, 16 Apr 2020 01:06:54: 32000000 INFO @ Thu, 16 Apr 2020 01:06:55: 39000000 INFO @ Thu, 16 Apr 2020 01:06:56: 36000000 INFO @ Thu, 16 Apr 2020 01:07:04: 33000000 INFO @ Thu, 16 Apr 2020 01:07:05: 40000000 INFO @ Thu, 16 Apr 2020 01:07:06: 37000000 INFO @ Thu, 16 Apr 2020 01:07:14: 34000000 INFO @ Thu, 16 Apr 2020 01:07:15: 41000000 INFO @ Thu, 16 Apr 2020 01:07:15: 38000000 INFO @ Thu, 16 Apr 2020 01:07:24: 35000000 INFO @ Thu, 16 Apr 2020 01:07:25: 42000000 INFO @ Thu, 16 Apr 2020 01:07:25: 39000000 INFO @ Thu, 16 Apr 2020 01:07:35: 40000000 INFO @ Thu, 16 Apr 2020 01:07:35: 36000000 INFO @ Thu, 16 Apr 2020 01:07:36: 43000000 INFO @ Thu, 16 Apr 2020 01:07:45: 41000000 INFO @ Thu, 16 Apr 2020 01:07:45: 37000000 INFO @ Thu, 16 Apr 2020 01:07:46: 44000000 INFO @ Thu, 16 Apr 2020 01:07:55: 38000000 INFO @ Thu, 16 Apr 2020 01:07:56: 42000000 INFO @ Thu, 16 Apr 2020 01:07:56: 45000000 INFO @ Thu, 16 Apr 2020 01:08:06: 39000000 INFO @ Thu, 16 Apr 2020 01:08:06: 46000000 INFO @ Thu, 16 Apr 2020 01:08:06: 43000000 INFO @ Thu, 16 Apr 2020 01:08:16: 40000000 INFO @ Thu, 16 Apr 2020 01:08:16: 47000000 INFO @ Thu, 16 Apr 2020 01:08:17: 44000000 INFO @ Thu, 16 Apr 2020 01:08:26: 41000000 INFO @ Thu, 16 Apr 2020 01:08:26: 45000000 INFO @ Thu, 16 Apr 2020 01:08:27: 48000000 INFO @ Thu, 16 Apr 2020 01:08:36: 42000000 INFO @ Thu, 16 Apr 2020 01:08:36: 46000000 INFO @ Thu, 16 Apr 2020 01:08:36: 49000000 INFO @ Thu, 16 Apr 2020 01:08:45: 43000000 INFO @ Thu, 16 Apr 2020 01:08:46: 50000000 INFO @ Thu, 16 Apr 2020 01:08:47: 47000000 INFO @ Thu, 16 Apr 2020 01:08:55: 44000000 INFO @ Thu, 16 Apr 2020 01:08:56: 51000000 INFO @ Thu, 16 Apr 2020 01:08:56: 48000000 INFO @ Thu, 16 Apr 2020 01:09:06: 45000000 INFO @ Thu, 16 Apr 2020 01:09:06: 52000000 INFO @ Thu, 16 Apr 2020 01:09:08: 49000000 INFO @ Thu, 16 Apr 2020 01:09:16: 46000000 INFO @ Thu, 16 Apr 2020 01:09:16: 53000000 INFO @ Thu, 16 Apr 2020 01:09:17: 50000000 INFO @ Thu, 16 Apr 2020 01:09:26: 47000000 INFO @ Thu, 16 Apr 2020 01:09:26: 54000000 INFO @ Thu, 16 Apr 2020 01:09:27: 51000000 INFO @ Thu, 16 Apr 2020 01:09:35: 48000000 INFO @ Thu, 16 Apr 2020 01:09:36: 52000000 INFO @ Thu, 16 Apr 2020 01:09:36: 55000000 INFO @ Thu, 16 Apr 2020 01:09:45: 49000000 INFO @ Thu, 16 Apr 2020 01:09:46: 56000000 INFO @ Thu, 16 Apr 2020 01:09:46: 53000000 INFO @ Thu, 16 Apr 2020 01:09:55: 50000000 INFO @ Thu, 16 Apr 2020 01:09:56: 57000000 INFO @ Thu, 16 Apr 2020 01:09:56: 54000000 INFO @ Thu, 16 Apr 2020 01:10:06: 55000000 INFO @ Thu, 16 Apr 2020 01:10:06: 51000000 INFO @ Thu, 16 Apr 2020 01:10:07: 58000000 INFO @ Thu, 16 Apr 2020 01:10:16: 52000000 INFO @ Thu, 16 Apr 2020 01:10:16: 56000000 INFO @ Thu, 16 Apr 2020 01:10:17: 59000000 INFO @ Thu, 16 Apr 2020 01:10:26: 53000000 INFO @ Thu, 16 Apr 2020 01:10:27: 57000000 INFO @ Thu, 16 Apr 2020 01:10:28: 60000000 INFO @ Thu, 16 Apr 2020 01:10:36: 54000000 INFO @ Thu, 16 Apr 2020 01:10:37: 58000000 INFO @ Thu, 16 Apr 2020 01:10:37: 61000000 INFO @ Thu, 16 Apr 2020 01:10:46: 55000000 INFO @ Thu, 16 Apr 2020 01:10:46: 59000000 INFO @ Thu, 16 Apr 2020 01:10:47: 62000000 INFO @ Thu, 16 Apr 2020 01:10:56: 56000000 INFO @ Thu, 16 Apr 2020 01:10:56: 60000000 INFO @ Thu, 16 Apr 2020 01:10:57: 63000000 INFO @ Thu, 16 Apr 2020 01:11:05: 57000000 INFO @ Thu, 16 Apr 2020 01:11:06: #1 tag size is determined as 150 bps INFO @ Thu, 16 Apr 2020 01:11:06: #1 tag size = 150 INFO @ Thu, 16 Apr 2020 01:11:06: #1 total tags in treatment: 22763515 INFO @ Thu, 16 Apr 2020 01:11:06: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 01:11:06: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 01:11:06: #1 tags after filtering in treatment: 17477407 INFO @ Thu, 16 Apr 2020 01:11:06: #1 Redundant rate of treatment: 0.23 INFO @ Thu, 16 Apr 2020 01:11:06: #1 finished! INFO @ Thu, 16 Apr 2020 01:11:06: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 01:11:06: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 01:11:07: 61000000 INFO @ Thu, 16 Apr 2020 01:11:07: #2 number of paired peaks: 1893 INFO @ Thu, 16 Apr 2020 01:11:07: start model_add_line... INFO @ Thu, 16 Apr 2020 01:11:08: start X-correlation... INFO @ Thu, 16 Apr 2020 01:11:08: end of X-cor INFO @ Thu, 16 Apr 2020 01:11:08: #2 finished! INFO @ Thu, 16 Apr 2020 01:11:08: #2 predicted fragment length is 248 bps INFO @ Thu, 16 Apr 2020 01:11:08: #2 alternative fragment length(s) may be 4,248 bps INFO @ Thu, 16 Apr 2020 01:11:08: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX6619554/SRX6619554.05_model.r WARNING @ Thu, 16 Apr 2020 01:11:08: #2 Since the d (248) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Thu, 16 Apr 2020 01:11:08: #2 You may need to consider one of the other alternative d(s): 4,248 WARNING @ Thu, 16 Apr 2020 01:11:08: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Thu, 16 Apr 2020 01:11:08: #3 Call peaks... INFO @ Thu, 16 Apr 2020 01:11:08: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 01:11:14: 58000000 INFO @ Thu, 16 Apr 2020 01:11:16: 62000000 INFO @ Thu, 16 Apr 2020 01:11:23: 59000000 INFO @ Thu, 16 Apr 2020 01:11:26: 63000000 INFO @ Thu, 16 Apr 2020 01:11:32: 60000000 INFO @ Thu, 16 Apr 2020 01:11:35: #1 tag size is determined as 150 bps INFO @ Thu, 16 Apr 2020 01:11:35: #1 tag size = 150 INFO @ Thu, 16 Apr 2020 01:11:35: #1 total tags in treatment: 22763515 INFO @ Thu, 16 Apr 2020 01:11:35: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 01:11:35: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 01:11:35: #1 tags after filtering in treatment: 17477407 INFO @ Thu, 16 Apr 2020 01:11:35: #1 Redundant rate of treatment: 0.23 INFO @ Thu, 16 Apr 2020 01:11:35: #1 finished! INFO @ Thu, 16 Apr 2020 01:11:35: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 01:11:35: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 01:11:37: #2 number of paired peaks: 1893 INFO @ Thu, 16 Apr 2020 01:11:37: start model_add_line... INFO @ Thu, 16 Apr 2020 01:11:37: start X-correlation... INFO @ Thu, 16 Apr 2020 01:11:37: end of X-cor INFO @ Thu, 16 Apr 2020 01:11:37: #2 finished! INFO @ Thu, 16 Apr 2020 01:11:37: #2 predicted fragment length is 248 bps INFO @ Thu, 16 Apr 2020 01:11:37: #2 alternative fragment length(s) may be 4,248 bps INFO @ Thu, 16 Apr 2020 01:11:37: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX6619554/SRX6619554.10_model.r WARNING @ Thu, 16 Apr 2020 01:11:37: #2 Since the d (248) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Thu, 16 Apr 2020 01:11:37: #2 You may need to consider one of the other alternative d(s): 4,248 WARNING @ Thu, 16 Apr 2020 01:11:37: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Thu, 16 Apr 2020 01:11:37: #3 Call peaks... INFO @ Thu, 16 Apr 2020 01:11:37: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 01:11:41: 61000000 INFO @ Thu, 16 Apr 2020 01:11:49: 62000000 INFO @ Thu, 16 Apr 2020 01:11:58: 63000000 INFO @ Thu, 16 Apr 2020 01:12:05: #1 tag size is determined as 150 bps INFO @ Thu, 16 Apr 2020 01:12:05: #1 tag size = 150 INFO @ Thu, 16 Apr 2020 01:12:05: #1 total tags in treatment: 22763515 INFO @ Thu, 16 Apr 2020 01:12:05: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 01:12:05: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 01:12:06: #1 tags after filtering in treatment: 17477407 INFO @ Thu, 16 Apr 2020 01:12:06: #1 Redundant rate of treatment: 0.23 INFO @ Thu, 16 Apr 2020 01:12:06: #1 finished! INFO @ Thu, 16 Apr 2020 01:12:06: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 01:12:06: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 01:12:07: #2 number of paired peaks: 1893 INFO @ Thu, 16 Apr 2020 01:12:07: start model_add_line... INFO @ Thu, 16 Apr 2020 01:12:07: start X-correlation... INFO @ Thu, 16 Apr 2020 01:12:07: end of X-cor INFO @ Thu, 16 Apr 2020 01:12:07: #2 finished! INFO @ Thu, 16 Apr 2020 01:12:07: #2 predicted fragment length is 248 bps INFO @ Thu, 16 Apr 2020 01:12:07: #2 alternative fragment length(s) may be 4,248 bps INFO @ Thu, 16 Apr 2020 01:12:07: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX6619554/SRX6619554.20_model.r WARNING @ Thu, 16 Apr 2020 01:12:07: #2 Since the d (248) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Thu, 16 Apr 2020 01:12:07: #2 You may need to consider one of the other alternative d(s): 4,248 WARNING @ Thu, 16 Apr 2020 01:12:07: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Thu, 16 Apr 2020 01:12:07: #3 Call peaks... INFO @ Thu, 16 Apr 2020 01:12:07: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 01:12:08: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 01:12:26: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX6619554/SRX6619554.05_peaks.xls INFO @ Thu, 16 Apr 2020 01:12:26: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX6619554/SRX6619554.05_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 01:12:26: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX6619554/SRX6619554.05_summits.bed INFO @ Thu, 16 Apr 2020 01:12:26: Done! pass1 - making usageList (6 chroms): 2 millis pass2 - checking and writing primary data (12305 records, 4 fields): 15 millis CompletedMACS2peakCalling INFO @ Thu, 16 Apr 2020 01:12:37: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 01:12:56: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX6619554/SRX6619554.10_peaks.xls INFO @ Thu, 16 Apr 2020 01:12:56: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX6619554/SRX6619554.10_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 01:12:56: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX6619554/SRX6619554.10_summits.bed INFO @ Thu, 16 Apr 2020 01:12:56: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (7080 records, 4 fields): 9 millis CompletedMACS2peakCalling INFO @ Thu, 16 Apr 2020 01:13:07: #3 Call peaks for each chromosome... BedGraph に変換しました。 BigWig に変換中... INFO @ Thu, 16 Apr 2020 01:13:24: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX6619554/SRX6619554.20_peaks.xls INFO @ Thu, 16 Apr 2020 01:13:24: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX6619554/SRX6619554.20_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 01:13:24: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX6619554/SRX6619554.20_summits.bed INFO @ Thu, 16 Apr 2020 01:13:24: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (2952 records, 4 fields): 4 millis CompletedMACS2peakCalling BigWig に変換しました。