Job ID = 5720180 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-04-15T12:54:32 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T12:56:28 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 31,068,609 reads read : 62,137,218 reads written : 62,137,218 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:16:26 31068609 reads; of these: 31068609 (100.00%) were paired; of these: 13865541 (44.63%) aligned concordantly 0 times 14359071 (46.22%) aligned concordantly exactly 1 time 2843997 (9.15%) aligned concordantly >1 times ---- 13865541 pairs aligned concordantly 0 times; of these: 7286486 (52.55%) aligned discordantly 1 time ---- 6579055 pairs aligned 0 times concordantly or discordantly; of these: 13158110 mates make up the pairs; of these: 10896421 (82.81%) aligned 0 times 824365 (6.27%) aligned exactly 1 time 1437324 (10.92%) aligned >1 times 82.46% overall alignment rate Time searching: 01:16:26 Overall time: 01:16:26 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 40 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 2582063 / 23949662 = 0.1078 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 00:04:11: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX6619551/SRX6619551.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX6619551/SRX6619551.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX6619551/SRX6619551.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX6619551/SRX6619551.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 00:04:11: #1 read tag files... INFO @ Thu, 16 Apr 2020 00:04:11: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 00:04:19: 1000000 INFO @ Thu, 16 Apr 2020 00:04:28: 2000000 INFO @ Thu, 16 Apr 2020 00:04:37: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 00:04:40: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX6619551/SRX6619551.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX6619551/SRX6619551.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX6619551/SRX6619551.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX6619551/SRX6619551.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 00:04:40: #1 read tag files... INFO @ Thu, 16 Apr 2020 00:04:40: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 00:04:46: 4000000 INFO @ Thu, 16 Apr 2020 00:04:49: 1000000 INFO @ Thu, 16 Apr 2020 00:04:55: 5000000 INFO @ Thu, 16 Apr 2020 00:05:02: 2000000 INFO @ Thu, 16 Apr 2020 00:05:04: 6000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 00:05:10: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX6619551/SRX6619551.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX6619551/SRX6619551.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX6619551/SRX6619551.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX6619551/SRX6619551.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 00:05:10: #1 read tag files... INFO @ Thu, 16 Apr 2020 00:05:10: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 00:05:12: 3000000 INFO @ Thu, 16 Apr 2020 00:05:13: 7000000 INFO @ Thu, 16 Apr 2020 00:05:21: 1000000 INFO @ Thu, 16 Apr 2020 00:05:21: 8000000 INFO @ Thu, 16 Apr 2020 00:05:22: 4000000 INFO @ Thu, 16 Apr 2020 00:05:31: 2000000 INFO @ Thu, 16 Apr 2020 00:05:31: 9000000 INFO @ Thu, 16 Apr 2020 00:05:32: 5000000 INFO @ Thu, 16 Apr 2020 00:05:40: 10000000 INFO @ Thu, 16 Apr 2020 00:05:41: 3000000 INFO @ Thu, 16 Apr 2020 00:05:42: 6000000 INFO @ Thu, 16 Apr 2020 00:05:48: 11000000 INFO @ Thu, 16 Apr 2020 00:05:51: 4000000 INFO @ Thu, 16 Apr 2020 00:05:52: 7000000 INFO @ Thu, 16 Apr 2020 00:05:57: 12000000 INFO @ Thu, 16 Apr 2020 00:06:01: 5000000 INFO @ Thu, 16 Apr 2020 00:06:01: 8000000 INFO @ Thu, 16 Apr 2020 00:06:06: 13000000 INFO @ Thu, 16 Apr 2020 00:06:11: 6000000 INFO @ Thu, 16 Apr 2020 00:06:11: 9000000 INFO @ Thu, 16 Apr 2020 00:06:17: 14000000 INFO @ Thu, 16 Apr 2020 00:06:20: 10000000 INFO @ Thu, 16 Apr 2020 00:06:23: 7000000 INFO @ Thu, 16 Apr 2020 00:06:28: 15000000 INFO @ Thu, 16 Apr 2020 00:06:28: 11000000 INFO @ Thu, 16 Apr 2020 00:06:33: 8000000 INFO @ Thu, 16 Apr 2020 00:06:37: 12000000 INFO @ Thu, 16 Apr 2020 00:06:38: 16000000 INFO @ Thu, 16 Apr 2020 00:06:43: 9000000 INFO @ Thu, 16 Apr 2020 00:06:46: 13000000 INFO @ Thu, 16 Apr 2020 00:06:48: 17000000 INFO @ Thu, 16 Apr 2020 00:06:52: 10000000 INFO @ Thu, 16 Apr 2020 00:06:55: 14000000 INFO @ Thu, 16 Apr 2020 00:06:58: 18000000 INFO @ Thu, 16 Apr 2020 00:07:02: 11000000 INFO @ Thu, 16 Apr 2020 00:07:04: 15000000 INFO @ Thu, 16 Apr 2020 00:07:08: 19000000 INFO @ Thu, 16 Apr 2020 00:07:12: 12000000 INFO @ Thu, 16 Apr 2020 00:07:13: 16000000 INFO @ Thu, 16 Apr 2020 00:07:18: 20000000 INFO @ Thu, 16 Apr 2020 00:07:21: 13000000 INFO @ Thu, 16 Apr 2020 00:07:22: 17000000 INFO @ Thu, 16 Apr 2020 00:07:27: 21000000 INFO @ Thu, 16 Apr 2020 00:07:31: 14000000 INFO @ Thu, 16 Apr 2020 00:07:32: 18000000 INFO @ Thu, 16 Apr 2020 00:07:36: 22000000 INFO @ Thu, 16 Apr 2020 00:07:41: 19000000 INFO @ Thu, 16 Apr 2020 00:07:41: 15000000 INFO @ Thu, 16 Apr 2020 00:07:46: 23000000 INFO @ Thu, 16 Apr 2020 00:07:50: 20000000 INFO @ Thu, 16 Apr 2020 00:07:51: 16000000 INFO @ Thu, 16 Apr 2020 00:07:56: 24000000 INFO @ Thu, 16 Apr 2020 00:07:59: 21000000 INFO @ Thu, 16 Apr 2020 00:08:00: 17000000 INFO @ Thu, 16 Apr 2020 00:08:05: 25000000 INFO @ Thu, 16 Apr 2020 00:08:08: 22000000 INFO @ Thu, 16 Apr 2020 00:08:10: 18000000 INFO @ Thu, 16 Apr 2020 00:08:15: 26000000 INFO @ Thu, 16 Apr 2020 00:08:17: 23000000 INFO @ Thu, 16 Apr 2020 00:08:20: 19000000 INFO @ Thu, 16 Apr 2020 00:08:25: 27000000 INFO @ Thu, 16 Apr 2020 00:08:30: 24000000 INFO @ Thu, 16 Apr 2020 00:08:30: 20000000 INFO @ Thu, 16 Apr 2020 00:08:35: 28000000 INFO @ Thu, 16 Apr 2020 00:08:40: 25000000 INFO @ Thu, 16 Apr 2020 00:08:40: 21000000 INFO @ Thu, 16 Apr 2020 00:08:45: 29000000 INFO @ Thu, 16 Apr 2020 00:08:49: 26000000 INFO @ Thu, 16 Apr 2020 00:08:51: 22000000 INFO @ Thu, 16 Apr 2020 00:08:57: 30000000 INFO @ Thu, 16 Apr 2020 00:08:58: 27000000 INFO @ Thu, 16 Apr 2020 00:09:02: 23000000 INFO @ Thu, 16 Apr 2020 00:09:07: 28000000 INFO @ Thu, 16 Apr 2020 00:09:08: 31000000 INFO @ Thu, 16 Apr 2020 00:09:13: 24000000 INFO @ Thu, 16 Apr 2020 00:09:16: 29000000 INFO @ Thu, 16 Apr 2020 00:09:20: 32000000 INFO @ Thu, 16 Apr 2020 00:09:25: 30000000 INFO @ Thu, 16 Apr 2020 00:09:26: 25000000 INFO @ Thu, 16 Apr 2020 00:09:33: 33000000 INFO @ Thu, 16 Apr 2020 00:09:35: 31000000 INFO @ Thu, 16 Apr 2020 00:09:39: 26000000 INFO @ Thu, 16 Apr 2020 00:09:45: 32000000 INFO @ Thu, 16 Apr 2020 00:09:45: 34000000 INFO @ Thu, 16 Apr 2020 00:09:51: 27000000 INFO @ Thu, 16 Apr 2020 00:09:55: 33000000 INFO @ Thu, 16 Apr 2020 00:09:58: 35000000 INFO @ Thu, 16 Apr 2020 00:10:04: 28000000 INFO @ Thu, 16 Apr 2020 00:10:06: 34000000 INFO @ Thu, 16 Apr 2020 00:10:11: 36000000 INFO @ Thu, 16 Apr 2020 00:10:16: 35000000 INFO @ Thu, 16 Apr 2020 00:10:17: 29000000 INFO @ Thu, 16 Apr 2020 00:10:24: 37000000 INFO @ Thu, 16 Apr 2020 00:10:27: 36000000 INFO @ Thu, 16 Apr 2020 00:10:30: 30000000 INFO @ Thu, 16 Apr 2020 00:10:37: 38000000 INFO @ Thu, 16 Apr 2020 00:10:37: 37000000 INFO @ Thu, 16 Apr 2020 00:10:43: 31000000 INFO @ Thu, 16 Apr 2020 00:10:48: 38000000 INFO @ Thu, 16 Apr 2020 00:10:50: 39000000 INFO @ Thu, 16 Apr 2020 00:10:56: 32000000 INFO @ Thu, 16 Apr 2020 00:10:59: 39000000 INFO @ Thu, 16 Apr 2020 00:11:03: 40000000 INFO @ Thu, 16 Apr 2020 00:11:09: 33000000 INFO @ Thu, 16 Apr 2020 00:11:10: 40000000 INFO @ Thu, 16 Apr 2020 00:11:17: 41000000 INFO @ Thu, 16 Apr 2020 00:11:21: 41000000 INFO @ Thu, 16 Apr 2020 00:11:22: 34000000 INFO @ Thu, 16 Apr 2020 00:11:30: 42000000 INFO @ Thu, 16 Apr 2020 00:11:31: 42000000 INFO @ Thu, 16 Apr 2020 00:11:35: 35000000 INFO @ Thu, 16 Apr 2020 00:11:42: 43000000 INFO @ Thu, 16 Apr 2020 00:11:43: 43000000 INFO @ Thu, 16 Apr 2020 00:11:47: 36000000 INFO @ Thu, 16 Apr 2020 00:11:56: 44000000 INFO @ Thu, 16 Apr 2020 00:11:57: 44000000 INFO @ Thu, 16 Apr 2020 00:12:00: 37000000 INFO @ Thu, 16 Apr 2020 00:12:08: 45000000 INFO @ Thu, 16 Apr 2020 00:12:10: 45000000 INFO @ Thu, 16 Apr 2020 00:12:13: 38000000 INFO @ Thu, 16 Apr 2020 00:12:18: 46000000 INFO @ Thu, 16 Apr 2020 00:12:19: #1 tag size is determined as 150 bps INFO @ Thu, 16 Apr 2020 00:12:19: #1 tag size = 150 INFO @ Thu, 16 Apr 2020 00:12:19: #1 total tags in treatment: 15250985 INFO @ Thu, 16 Apr 2020 00:12:19: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 00:12:19: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 00:12:20: #1 tags after filtering in treatment: 13115525 INFO @ Thu, 16 Apr 2020 00:12:20: #1 Redundant rate of treatment: 0.14 INFO @ Thu, 16 Apr 2020 00:12:20: #1 finished! INFO @ Thu, 16 Apr 2020 00:12:20: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 00:12:20: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 00:12:20: #2 number of paired peaks: 286 WARNING @ Thu, 16 Apr 2020 00:12:20: Fewer paired peaks (286) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 286 pairs to build model! INFO @ Thu, 16 Apr 2020 00:12:20: start model_add_line... INFO @ Thu, 16 Apr 2020 00:12:21: start X-correlation... INFO @ Thu, 16 Apr 2020 00:12:21: end of X-cor INFO @ Thu, 16 Apr 2020 00:12:21: #2 finished! INFO @ Thu, 16 Apr 2020 00:12:21: #2 predicted fragment length is 197 bps INFO @ Thu, 16 Apr 2020 00:12:21: #2 alternative fragment length(s) may be 4,197,217 bps INFO @ Thu, 16 Apr 2020 00:12:21: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX6619551/SRX6619551.10_model.r WARNING @ Thu, 16 Apr 2020 00:12:21: #2 Since the d (197) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Thu, 16 Apr 2020 00:12:21: #2 You may need to consider one of the other alternative d(s): 4,197,217 WARNING @ Thu, 16 Apr 2020 00:12:21: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Thu, 16 Apr 2020 00:12:21: #3 Call peaks... INFO @ Thu, 16 Apr 2020 00:12:21: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 00:12:23: 46000000 INFO @ Thu, 16 Apr 2020 00:12:24: #1 tag size is determined as 150 bps INFO @ Thu, 16 Apr 2020 00:12:24: #1 tag size = 150 INFO @ Thu, 16 Apr 2020 00:12:24: #1 total tags in treatment: 15250985 INFO @ Thu, 16 Apr 2020 00:12:24: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 00:12:24: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 00:12:25: #1 tags after filtering in treatment: 13115525 INFO @ Thu, 16 Apr 2020 00:12:25: #1 Redundant rate of treatment: 0.14 INFO @ Thu, 16 Apr 2020 00:12:25: #1 finished! INFO @ Thu, 16 Apr 2020 00:12:25: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 00:12:25: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 00:12:26: #2 number of paired peaks: 286 WARNING @ Thu, 16 Apr 2020 00:12:26: Fewer paired peaks (286) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 286 pairs to build model! INFO @ Thu, 16 Apr 2020 00:12:26: start model_add_line... INFO @ Thu, 16 Apr 2020 00:12:26: start X-correlation... INFO @ Thu, 16 Apr 2020 00:12:26: end of X-cor INFO @ Thu, 16 Apr 2020 00:12:26: #2 finished! INFO @ Thu, 16 Apr 2020 00:12:26: #2 predicted fragment length is 197 bps INFO @ Thu, 16 Apr 2020 00:12:26: #2 alternative fragment length(s) may be 4,197,217 bps INFO @ Thu, 16 Apr 2020 00:12:26: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX6619551/SRX6619551.05_model.r WARNING @ Thu, 16 Apr 2020 00:12:26: #2 Since the d (197) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Thu, 16 Apr 2020 00:12:26: #2 You may need to consider one of the other alternative d(s): 4,197,217 WARNING @ Thu, 16 Apr 2020 00:12:26: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Thu, 16 Apr 2020 00:12:26: #3 Call peaks... INFO @ Thu, 16 Apr 2020 00:12:26: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 00:12:26: 39000000 INFO @ Thu, 16 Apr 2020 00:12:39: 40000000 INFO @ Thu, 16 Apr 2020 00:12:45: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 00:12:51: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 00:12:52: 41000000 INFO @ Thu, 16 Apr 2020 00:12:59: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX6619551/SRX6619551.10_peaks.xls INFO @ Thu, 16 Apr 2020 00:12:59: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX6619551/SRX6619551.10_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 00:12:59: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX6619551/SRX6619551.10_summits.bed INFO @ Thu, 16 Apr 2020 00:12:59: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (349 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Thu, 16 Apr 2020 00:13:04: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX6619551/SRX6619551.05_peaks.xls INFO @ Thu, 16 Apr 2020 00:13:04: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX6619551/SRX6619551.05_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 00:13:04: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX6619551/SRX6619551.05_summits.bed INFO @ Thu, 16 Apr 2020 00:13:04: Done! pass1 - making usageList (7 chroms): 0 millis pass2 - checking and writing primary data (480 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Thu, 16 Apr 2020 00:13:06: 42000000 INFO @ Thu, 16 Apr 2020 00:13:19: 43000000 INFO @ Thu, 16 Apr 2020 00:13:33: 44000000 INFO @ Thu, 16 Apr 2020 00:13:46: 45000000 INFO @ Thu, 16 Apr 2020 00:14:00: 46000000 INFO @ Thu, 16 Apr 2020 00:14:01: #1 tag size is determined as 150 bps INFO @ Thu, 16 Apr 2020 00:14:01: #1 tag size = 150 INFO @ Thu, 16 Apr 2020 00:14:01: #1 total tags in treatment: 15250985 INFO @ Thu, 16 Apr 2020 00:14:01: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 00:14:01: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 00:14:01: #1 tags after filtering in treatment: 13115525 INFO @ Thu, 16 Apr 2020 00:14:01: #1 Redundant rate of treatment: 0.14 INFO @ Thu, 16 Apr 2020 00:14:01: #1 finished! INFO @ Thu, 16 Apr 2020 00:14:01: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 00:14:01: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 00:14:02: #2 number of paired peaks: 286 WARNING @ Thu, 16 Apr 2020 00:14:02: Fewer paired peaks (286) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 286 pairs to build model! INFO @ Thu, 16 Apr 2020 00:14:02: start model_add_line... INFO @ Thu, 16 Apr 2020 00:14:02: start X-correlation... INFO @ Thu, 16 Apr 2020 00:14:02: end of X-cor INFO @ Thu, 16 Apr 2020 00:14:02: #2 finished! INFO @ Thu, 16 Apr 2020 00:14:02: #2 predicted fragment length is 197 bps INFO @ Thu, 16 Apr 2020 00:14:02: #2 alternative fragment length(s) may be 4,197,217 bps INFO @ Thu, 16 Apr 2020 00:14:02: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX6619551/SRX6619551.20_model.r WARNING @ Thu, 16 Apr 2020 00:14:02: #2 Since the d (197) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Thu, 16 Apr 2020 00:14:02: #2 You may need to consider one of the other alternative d(s): 4,197,217 WARNING @ Thu, 16 Apr 2020 00:14:02: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Thu, 16 Apr 2020 00:14:02: #3 Call peaks... INFO @ Thu, 16 Apr 2020 00:14:02: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 00:14:27: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 00:14:40: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX6619551/SRX6619551.20_peaks.xls INFO @ Thu, 16 Apr 2020 00:14:40: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX6619551/SRX6619551.20_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 00:14:40: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX6619551/SRX6619551.20_summits.bed INFO @ Thu, 16 Apr 2020 00:14:40: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (229 records, 4 fields): 1 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。