Job ID = 5720173 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-04-15T12:49:04 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T12:53:39 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T12:56:28 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:02:01 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:26:10 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:27:19 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:36:40 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:37:30 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 53,603,774 reads read : 107,207,548 reads written : 107,207,548 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:00 Multiseed full-index search: 02:00:12 53603774 reads; of these: 53603774 (100.00%) were paired; of these: 22743550 (42.43%) aligned concordantly 0 times 23869637 (44.53%) aligned concordantly exactly 1 time 6990587 (13.04%) aligned concordantly >1 times ---- 22743550 pairs aligned concordantly 0 times; of these: 14554921 (64.00%) aligned discordantly 1 time ---- 8188629 pairs aligned 0 times concordantly or discordantly; of these: 16377258 mates make up the pairs; of these: 5839703 (35.66%) aligned 0 times 3747505 (22.88%) aligned exactly 1 time 6790050 (41.46%) aligned >1 times 94.55% overall alignment rate Time searching: 02:00:13 Overall time: 02:00:13 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 76 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 7168563 / 45229435 = 0.1585 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 01:26:50: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX6619544/SRX6619544.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX6619544/SRX6619544.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX6619544/SRX6619544.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX6619544/SRX6619544.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 01:26:50: #1 read tag files... INFO @ Thu, 16 Apr 2020 01:26:50: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 01:27:00: 1000000 INFO @ Thu, 16 Apr 2020 01:27:10: 2000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 01:27:19: 3000000 INFO @ Thu, 16 Apr 2020 01:27:20: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX6619544/SRX6619544.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX6619544/SRX6619544.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX6619544/SRX6619544.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX6619544/SRX6619544.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 01:27:20: #1 read tag files... INFO @ Thu, 16 Apr 2020 01:27:20: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 01:27:30: 4000000 INFO @ Thu, 16 Apr 2020 01:27:32: 1000000 INFO @ Thu, 16 Apr 2020 01:27:42: 5000000 INFO @ Thu, 16 Apr 2020 01:27:44: 2000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 01:27:50: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX6619544/SRX6619544.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX6619544/SRX6619544.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX6619544/SRX6619544.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX6619544/SRX6619544.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 01:27:50: #1 read tag files... INFO @ Thu, 16 Apr 2020 01:27:50: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 01:27:53: 6000000 INFO @ Thu, 16 Apr 2020 01:27:55: 3000000 INFO @ Thu, 16 Apr 2020 01:28:00: 1000000 INFO @ Thu, 16 Apr 2020 01:28:05: 7000000 INFO @ Thu, 16 Apr 2020 01:28:07: 4000000 INFO @ Thu, 16 Apr 2020 01:28:11: 2000000 INFO @ Thu, 16 Apr 2020 01:28:16: 8000000 INFO @ Thu, 16 Apr 2020 01:28:19: 5000000 INFO @ Thu, 16 Apr 2020 01:28:21: 3000000 INFO @ Thu, 16 Apr 2020 01:28:28: 9000000 INFO @ Thu, 16 Apr 2020 01:28:31: 6000000 INFO @ Thu, 16 Apr 2020 01:28:31: 4000000 INFO @ Thu, 16 Apr 2020 01:28:40: 10000000 INFO @ Thu, 16 Apr 2020 01:28:42: 5000000 INFO @ Thu, 16 Apr 2020 01:28:43: 7000000 INFO @ Thu, 16 Apr 2020 01:28:51: 11000000 INFO @ Thu, 16 Apr 2020 01:28:53: 6000000 INFO @ Thu, 16 Apr 2020 01:28:55: 8000000 INFO @ Thu, 16 Apr 2020 01:29:03: 12000000 INFO @ Thu, 16 Apr 2020 01:29:04: 7000000 INFO @ Thu, 16 Apr 2020 01:29:07: 9000000 INFO @ Thu, 16 Apr 2020 01:29:14: 13000000 INFO @ Thu, 16 Apr 2020 01:29:15: 8000000 INFO @ Thu, 16 Apr 2020 01:29:19: 10000000 INFO @ Thu, 16 Apr 2020 01:29:25: 9000000 INFO @ Thu, 16 Apr 2020 01:29:26: 14000000 INFO @ Thu, 16 Apr 2020 01:29:31: 11000000 INFO @ Thu, 16 Apr 2020 01:29:36: 10000000 INFO @ Thu, 16 Apr 2020 01:29:37: 15000000 INFO @ Thu, 16 Apr 2020 01:29:43: 12000000 INFO @ Thu, 16 Apr 2020 01:29:46: 11000000 INFO @ Thu, 16 Apr 2020 01:29:49: 16000000 INFO @ Thu, 16 Apr 2020 01:29:55: 13000000 INFO @ Thu, 16 Apr 2020 01:29:56: 12000000 INFO @ Thu, 16 Apr 2020 01:30:00: 17000000 INFO @ Thu, 16 Apr 2020 01:30:07: 13000000 INFO @ Thu, 16 Apr 2020 01:30:07: 14000000 INFO @ Thu, 16 Apr 2020 01:30:11: 18000000 INFO @ Thu, 16 Apr 2020 01:30:17: 14000000 INFO @ Thu, 16 Apr 2020 01:30:19: 15000000 INFO @ Thu, 16 Apr 2020 01:30:23: 19000000 INFO @ Thu, 16 Apr 2020 01:30:27: 15000000 INFO @ Thu, 16 Apr 2020 01:30:30: 16000000 INFO @ Thu, 16 Apr 2020 01:30:34: 20000000 INFO @ Thu, 16 Apr 2020 01:30:37: 16000000 INFO @ Thu, 16 Apr 2020 01:30:42: 17000000 INFO @ Thu, 16 Apr 2020 01:30:45: 21000000 INFO @ Thu, 16 Apr 2020 01:30:48: 17000000 INFO @ Thu, 16 Apr 2020 01:30:53: 18000000 INFO @ Thu, 16 Apr 2020 01:30:56: 22000000 INFO @ Thu, 16 Apr 2020 01:30:58: 18000000 INFO @ Thu, 16 Apr 2020 01:31:05: 19000000 INFO @ Thu, 16 Apr 2020 01:31:08: 23000000 INFO @ Thu, 16 Apr 2020 01:31:08: 19000000 INFO @ Thu, 16 Apr 2020 01:31:17: 20000000 INFO @ Thu, 16 Apr 2020 01:31:18: 20000000 INFO @ Thu, 16 Apr 2020 01:31:19: 24000000 INFO @ Thu, 16 Apr 2020 01:31:28: 21000000 INFO @ Thu, 16 Apr 2020 01:31:29: 21000000 INFO @ Thu, 16 Apr 2020 01:31:31: 25000000 INFO @ Thu, 16 Apr 2020 01:31:40: 22000000 INFO @ Thu, 16 Apr 2020 01:31:41: 22000000 INFO @ Thu, 16 Apr 2020 01:31:41: 26000000 INFO @ Thu, 16 Apr 2020 01:31:52: 23000000 INFO @ Thu, 16 Apr 2020 01:31:52: 23000000 INFO @ Thu, 16 Apr 2020 01:31:53: 27000000 INFO @ Thu, 16 Apr 2020 01:32:03: 24000000 INFO @ Thu, 16 Apr 2020 01:32:04: 28000000 INFO @ Thu, 16 Apr 2020 01:32:04: 24000000 INFO @ Thu, 16 Apr 2020 01:32:15: 29000000 INFO @ Thu, 16 Apr 2020 01:32:16: 25000000 INFO @ Thu, 16 Apr 2020 01:32:16: 25000000 INFO @ Thu, 16 Apr 2020 01:32:27: 30000000 INFO @ Thu, 16 Apr 2020 01:32:27: 26000000 INFO @ Thu, 16 Apr 2020 01:32:28: 26000000 INFO @ Thu, 16 Apr 2020 01:32:38: 31000000 INFO @ Thu, 16 Apr 2020 01:32:39: 27000000 INFO @ Thu, 16 Apr 2020 01:32:40: 27000000 INFO @ Thu, 16 Apr 2020 01:32:49: 32000000 INFO @ Thu, 16 Apr 2020 01:32:51: 28000000 INFO @ Thu, 16 Apr 2020 01:32:52: 28000000 INFO @ Thu, 16 Apr 2020 01:33:01: 33000000 INFO @ Thu, 16 Apr 2020 01:33:02: 29000000 INFO @ Thu, 16 Apr 2020 01:33:03: 29000000 INFO @ Thu, 16 Apr 2020 01:33:12: 34000000 INFO @ Thu, 16 Apr 2020 01:33:14: 30000000 INFO @ Thu, 16 Apr 2020 01:33:15: 30000000 INFO @ Thu, 16 Apr 2020 01:33:23: 35000000 INFO @ Thu, 16 Apr 2020 01:33:26: 31000000 INFO @ Thu, 16 Apr 2020 01:33:27: 31000000 INFO @ Thu, 16 Apr 2020 01:33:35: 36000000 INFO @ Thu, 16 Apr 2020 01:33:37: 32000000 INFO @ Thu, 16 Apr 2020 01:33:38: 32000000 INFO @ Thu, 16 Apr 2020 01:33:46: 37000000 INFO @ Thu, 16 Apr 2020 01:33:49: 33000000 INFO @ Thu, 16 Apr 2020 01:33:50: 33000000 INFO @ Thu, 16 Apr 2020 01:33:57: 38000000 INFO @ Thu, 16 Apr 2020 01:34:01: 34000000 INFO @ Thu, 16 Apr 2020 01:34:02: 34000000 INFO @ Thu, 16 Apr 2020 01:34:09: 39000000 INFO @ Thu, 16 Apr 2020 01:34:13: 35000000 INFO @ Thu, 16 Apr 2020 01:34:14: 35000000 INFO @ Thu, 16 Apr 2020 01:34:20: 40000000 INFO @ Thu, 16 Apr 2020 01:34:24: 36000000 INFO @ Thu, 16 Apr 2020 01:34:25: 36000000 INFO @ Thu, 16 Apr 2020 01:34:32: 41000000 INFO @ Thu, 16 Apr 2020 01:34:36: 37000000 INFO @ Thu, 16 Apr 2020 01:34:37: 37000000 INFO @ Thu, 16 Apr 2020 01:34:43: 42000000 INFO @ Thu, 16 Apr 2020 01:34:48: 38000000 INFO @ Thu, 16 Apr 2020 01:34:49: 38000000 INFO @ Thu, 16 Apr 2020 01:34:55: 43000000 INFO @ Thu, 16 Apr 2020 01:34:59: 39000000 INFO @ Thu, 16 Apr 2020 01:35:00: 39000000 INFO @ Thu, 16 Apr 2020 01:35:07: 44000000 INFO @ Thu, 16 Apr 2020 01:35:11: 40000000 INFO @ Thu, 16 Apr 2020 01:35:12: 40000000 INFO @ Thu, 16 Apr 2020 01:35:19: 45000000 INFO @ Thu, 16 Apr 2020 01:35:23: 41000000 INFO @ Thu, 16 Apr 2020 01:35:24: 41000000 INFO @ Thu, 16 Apr 2020 01:35:30: 46000000 INFO @ Thu, 16 Apr 2020 01:35:35: 42000000 INFO @ Thu, 16 Apr 2020 01:35:36: 42000000 INFO @ Thu, 16 Apr 2020 01:35:41: 47000000 INFO @ Thu, 16 Apr 2020 01:35:47: 43000000 INFO @ Thu, 16 Apr 2020 01:35:48: 43000000 INFO @ Thu, 16 Apr 2020 01:35:52: 48000000 INFO @ Thu, 16 Apr 2020 01:35:59: 44000000 INFO @ Thu, 16 Apr 2020 01:36:00: 44000000 INFO @ Thu, 16 Apr 2020 01:36:04: 49000000 INFO @ Thu, 16 Apr 2020 01:36:11: 45000000 INFO @ Thu, 16 Apr 2020 01:36:12: 45000000 INFO @ Thu, 16 Apr 2020 01:36:15: 50000000 INFO @ Thu, 16 Apr 2020 01:36:23: 46000000 INFO @ Thu, 16 Apr 2020 01:36:24: 46000000 INFO @ Thu, 16 Apr 2020 01:36:27: 51000000 INFO @ Thu, 16 Apr 2020 01:36:35: 47000000 INFO @ Thu, 16 Apr 2020 01:36:36: 47000000 INFO @ Thu, 16 Apr 2020 01:36:38: 52000000 INFO @ Thu, 16 Apr 2020 01:36:47: 48000000 INFO @ Thu, 16 Apr 2020 01:36:47: 48000000 INFO @ Thu, 16 Apr 2020 01:36:49: 53000000 INFO @ Thu, 16 Apr 2020 01:36:59: 49000000 INFO @ Thu, 16 Apr 2020 01:37:00: 49000000 INFO @ Thu, 16 Apr 2020 01:37:00: 54000000 INFO @ Thu, 16 Apr 2020 01:37:11: 50000000 INFO @ Thu, 16 Apr 2020 01:37:12: 50000000 INFO @ Thu, 16 Apr 2020 01:37:12: 55000000 INFO @ Thu, 16 Apr 2020 01:37:23: 51000000 INFO @ Thu, 16 Apr 2020 01:37:23: 56000000 INFO @ Thu, 16 Apr 2020 01:37:24: 51000000 INFO @ Thu, 16 Apr 2020 01:37:35: 57000000 INFO @ Thu, 16 Apr 2020 01:37:35: 52000000 INFO @ Thu, 16 Apr 2020 01:37:36: 52000000 INFO @ Thu, 16 Apr 2020 01:37:47: 58000000 INFO @ Thu, 16 Apr 2020 01:37:47: 53000000 INFO @ Thu, 16 Apr 2020 01:37:48: 53000000 INFO @ Thu, 16 Apr 2020 01:37:58: 59000000 INFO @ Thu, 16 Apr 2020 01:37:58: 54000000 INFO @ Thu, 16 Apr 2020 01:37:59: 54000000 INFO @ Thu, 16 Apr 2020 01:38:09: 60000000 INFO @ Thu, 16 Apr 2020 01:38:11: 55000000 INFO @ Thu, 16 Apr 2020 01:38:11: 55000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Thu, 16 Apr 2020 01:38:21: 61000000 INFO @ Thu, 16 Apr 2020 01:38:23: 56000000 INFO @ Thu, 16 Apr 2020 01:38:24: 56000000 INFO @ Thu, 16 Apr 2020 01:38:32: 62000000 INFO @ Thu, 16 Apr 2020 01:38:35: 57000000 INFO @ Thu, 16 Apr 2020 01:38:36: 57000000 INFO @ Thu, 16 Apr 2020 01:38:43: 63000000 INFO @ Thu, 16 Apr 2020 01:38:48: 58000000 INFO @ Thu, 16 Apr 2020 01:38:49: 58000000 INFO @ Thu, 16 Apr 2020 01:38:55: 64000000 INFO @ Thu, 16 Apr 2020 01:39:01: 59000000 INFO @ Thu, 16 Apr 2020 01:39:01: 59000000 INFO @ Thu, 16 Apr 2020 01:39:06: 65000000 INFO @ Thu, 16 Apr 2020 01:39:13: 60000000 INFO @ Thu, 16 Apr 2020 01:39:13: 60000000 INFO @ Thu, 16 Apr 2020 01:39:17: 66000000 BigWig に変換しました。 INFO @ Thu, 16 Apr 2020 01:39:25: 61000000 INFO @ Thu, 16 Apr 2020 01:39:26: 61000000 INFO @ Thu, 16 Apr 2020 01:39:28: 67000000 INFO @ Thu, 16 Apr 2020 01:39:38: 62000000 INFO @ Thu, 16 Apr 2020 01:39:39: 62000000 INFO @ Thu, 16 Apr 2020 01:39:40: 68000000 INFO @ Thu, 16 Apr 2020 01:39:51: 63000000 INFO @ Thu, 16 Apr 2020 01:39:51: 69000000 INFO @ Thu, 16 Apr 2020 01:39:51: 63000000 INFO @ Thu, 16 Apr 2020 01:40:02: 70000000 INFO @ Thu, 16 Apr 2020 01:40:02: 64000000 INFO @ Thu, 16 Apr 2020 01:40:03: 64000000 INFO @ Thu, 16 Apr 2020 01:40:14: 65000000 INFO @ Thu, 16 Apr 2020 01:40:14: 71000000 INFO @ Thu, 16 Apr 2020 01:40:15: 65000000 INFO @ Thu, 16 Apr 2020 01:40:25: 66000000 INFO @ Thu, 16 Apr 2020 01:40:26: 72000000 INFO @ Thu, 16 Apr 2020 01:40:26: 66000000 INFO @ Thu, 16 Apr 2020 01:40:36: 67000000 INFO @ Thu, 16 Apr 2020 01:40:37: 73000000 INFO @ Thu, 16 Apr 2020 01:40:37: 67000000 INFO @ Thu, 16 Apr 2020 01:40:47: 68000000 INFO @ Thu, 16 Apr 2020 01:40:48: 68000000 INFO @ Thu, 16 Apr 2020 01:40:49: 74000000 INFO @ Thu, 16 Apr 2020 01:40:59: 69000000 INFO @ Thu, 16 Apr 2020 01:41:00: 69000000 INFO @ Thu, 16 Apr 2020 01:41:00: 75000000 INFO @ Thu, 16 Apr 2020 01:41:10: 70000000 INFO @ Thu, 16 Apr 2020 01:41:11: 70000000 INFO @ Thu, 16 Apr 2020 01:41:12: 76000000 INFO @ Thu, 16 Apr 2020 01:41:21: 71000000 INFO @ Thu, 16 Apr 2020 01:41:22: 71000000 INFO @ Thu, 16 Apr 2020 01:41:23: 77000000 INFO @ Thu, 16 Apr 2020 01:41:33: 72000000 INFO @ Thu, 16 Apr 2020 01:41:34: 72000000 INFO @ Thu, 16 Apr 2020 01:41:35: 78000000 INFO @ Thu, 16 Apr 2020 01:41:44: 73000000 INFO @ Thu, 16 Apr 2020 01:41:45: 73000000 INFO @ Thu, 16 Apr 2020 01:41:47: 79000000 INFO @ Thu, 16 Apr 2020 01:41:56: 74000000 INFO @ Thu, 16 Apr 2020 01:41:57: 74000000 INFO @ Thu, 16 Apr 2020 01:41:58: 80000000 INFO @ Thu, 16 Apr 2020 01:42:07: 75000000 INFO @ Thu, 16 Apr 2020 01:42:08: 75000000 INFO @ Thu, 16 Apr 2020 01:42:10: 81000000 INFO @ Thu, 16 Apr 2020 01:42:19: 76000000 INFO @ Thu, 16 Apr 2020 01:42:20: 76000000 INFO @ Thu, 16 Apr 2020 01:42:21: 82000000 INFO @ Thu, 16 Apr 2020 01:42:31: 77000000 INFO @ Thu, 16 Apr 2020 01:42:32: 77000000 INFO @ Thu, 16 Apr 2020 01:42:33: 83000000 INFO @ Thu, 16 Apr 2020 01:42:42: 78000000 INFO @ Thu, 16 Apr 2020 01:42:43: 78000000 INFO @ Thu, 16 Apr 2020 01:42:45: 84000000 INFO @ Thu, 16 Apr 2020 01:42:54: 79000000 INFO @ Thu, 16 Apr 2020 01:42:55: 79000000 INFO @ Thu, 16 Apr 2020 01:42:57: 85000000 INFO @ Thu, 16 Apr 2020 01:43:05: 80000000 INFO @ Thu, 16 Apr 2020 01:43:06: 80000000 INFO @ Thu, 16 Apr 2020 01:43:08: 86000000 INFO @ Thu, 16 Apr 2020 01:43:17: 81000000 INFO @ Thu, 16 Apr 2020 01:43:18: 81000000 INFO @ Thu, 16 Apr 2020 01:43:20: 87000000 INFO @ Thu, 16 Apr 2020 01:43:20: #1 tag size is determined as 150 bps INFO @ Thu, 16 Apr 2020 01:43:20: #1 tag size = 150 INFO @ Thu, 16 Apr 2020 01:43:20: #1 total tags in treatment: 25957745 INFO @ Thu, 16 Apr 2020 01:43:20: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 01:43:20: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 01:43:21: #1 tags after filtering in treatment: 19037575 INFO @ Thu, 16 Apr 2020 01:43:21: #1 Redundant rate of treatment: 0.27 INFO @ Thu, 16 Apr 2020 01:43:21: #1 finished! INFO @ Thu, 16 Apr 2020 01:43:21: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 01:43:21: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 01:43:22: #2 number of paired peaks: 1704 INFO @ Thu, 16 Apr 2020 01:43:22: start model_add_line... INFO @ Thu, 16 Apr 2020 01:43:22: start X-correlation... INFO @ Thu, 16 Apr 2020 01:43:22: end of X-cor INFO @ Thu, 16 Apr 2020 01:43:22: #2 finished! INFO @ Thu, 16 Apr 2020 01:43:22: #2 predicted fragment length is 252 bps INFO @ Thu, 16 Apr 2020 01:43:22: #2 alternative fragment length(s) may be 4,252 bps INFO @ Thu, 16 Apr 2020 01:43:22: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX6619544/SRX6619544.05_model.r WARNING @ Thu, 16 Apr 2020 01:43:22: #2 Since the d (252) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Thu, 16 Apr 2020 01:43:22: #2 You may need to consider one of the other alternative d(s): 4,252 WARNING @ Thu, 16 Apr 2020 01:43:22: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Thu, 16 Apr 2020 01:43:22: #3 Call peaks... INFO @ Thu, 16 Apr 2020 01:43:22: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 01:43:28: 82000000 INFO @ Thu, 16 Apr 2020 01:43:29: 82000000 INFO @ Thu, 16 Apr 2020 01:43:39: 83000000 INFO @ Thu, 16 Apr 2020 01:43:40: 83000000 INFO @ Thu, 16 Apr 2020 01:43:50: 84000000 INFO @ Thu, 16 Apr 2020 01:43:51: 84000000 INFO @ Thu, 16 Apr 2020 01:44:02: 85000000 INFO @ Thu, 16 Apr 2020 01:44:02: 85000000 INFO @ Thu, 16 Apr 2020 01:44:13: 86000000 INFO @ Thu, 16 Apr 2020 01:44:14: 86000000 INFO @ Thu, 16 Apr 2020 01:44:18: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 01:44:24: 87000000 INFO @ Thu, 16 Apr 2020 01:44:24: #1 tag size is determined as 150 bps INFO @ Thu, 16 Apr 2020 01:44:24: #1 tag size = 150 INFO @ Thu, 16 Apr 2020 01:44:24: #1 total tags in treatment: 25957745 INFO @ Thu, 16 Apr 2020 01:44:24: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 01:44:24: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 01:44:25: 87000000 INFO @ Thu, 16 Apr 2020 01:44:25: #1 tags after filtering in treatment: 19037575 INFO @ Thu, 16 Apr 2020 01:44:25: #1 Redundant rate of treatment: 0.27 INFO @ Thu, 16 Apr 2020 01:44:25: #1 finished! INFO @ Thu, 16 Apr 2020 01:44:25: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 01:44:25: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 01:44:25: #1 tag size is determined as 150 bps INFO @ Thu, 16 Apr 2020 01:44:25: #1 tag size = 150 INFO @ Thu, 16 Apr 2020 01:44:25: #1 total tags in treatment: 25957745 INFO @ Thu, 16 Apr 2020 01:44:25: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 01:44:25: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 01:44:26: #1 tags after filtering in treatment: 19037575 INFO @ Thu, 16 Apr 2020 01:44:26: #1 Redundant rate of treatment: 0.27 INFO @ Thu, 16 Apr 2020 01:44:26: #1 finished! INFO @ Thu, 16 Apr 2020 01:44:26: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 01:44:26: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 01:44:26: #2 number of paired peaks: 1704 INFO @ Thu, 16 Apr 2020 01:44:26: start model_add_line... INFO @ Thu, 16 Apr 2020 01:44:26: start X-correlation... INFO @ Thu, 16 Apr 2020 01:44:26: end of X-cor INFO @ Thu, 16 Apr 2020 01:44:26: #2 finished! INFO @ Thu, 16 Apr 2020 01:44:26: #2 predicted fragment length is 252 bps INFO @ Thu, 16 Apr 2020 01:44:26: #2 alternative fragment length(s) may be 4,252 bps INFO @ Thu, 16 Apr 2020 01:44:26: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX6619544/SRX6619544.10_model.r WARNING @ Thu, 16 Apr 2020 01:44:26: #2 Since the d (252) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Thu, 16 Apr 2020 01:44:26: #2 You may need to consider one of the other alternative d(s): 4,252 WARNING @ Thu, 16 Apr 2020 01:44:26: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Thu, 16 Apr 2020 01:44:26: #3 Call peaks... INFO @ Thu, 16 Apr 2020 01:44:26: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 01:44:27: #2 number of paired peaks: 1704 INFO @ Thu, 16 Apr 2020 01:44:27: start model_add_line... INFO @ Thu, 16 Apr 2020 01:44:27: start X-correlation... INFO @ Thu, 16 Apr 2020 01:44:27: end of X-cor INFO @ Thu, 16 Apr 2020 01:44:27: #2 finished! INFO @ Thu, 16 Apr 2020 01:44:27: #2 predicted fragment length is 252 bps INFO @ Thu, 16 Apr 2020 01:44:27: #2 alternative fragment length(s) may be 4,252 bps INFO @ Thu, 16 Apr 2020 01:44:27: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX6619544/SRX6619544.20_model.r WARNING @ Thu, 16 Apr 2020 01:44:27: #2 Since the d (252) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Thu, 16 Apr 2020 01:44:27: #2 You may need to consider one of the other alternative d(s): 4,252 WARNING @ Thu, 16 Apr 2020 01:44:27: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Thu, 16 Apr 2020 01:44:27: #3 Call peaks... INFO @ Thu, 16 Apr 2020 01:44:27: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 01:44:39: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX6619544/SRX6619544.05_peaks.xls INFO @ Thu, 16 Apr 2020 01:44:39: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX6619544/SRX6619544.05_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 01:44:39: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX6619544/SRX6619544.05_summits.bed INFO @ Thu, 16 Apr 2020 01:44:39: Done! pass1 - making usageList (6 chroms): 2 millis pass2 - checking and writing primary data (16785 records, 4 fields): 15 millis CompletedMACS2peakCalling INFO @ Thu, 16 Apr 2020 01:45:21: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 01:45:23: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 01:45:41: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX6619544/SRX6619544.10_peaks.xls INFO @ Thu, 16 Apr 2020 01:45:41: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX6619544/SRX6619544.10_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 01:45:41: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX6619544/SRX6619544.10_summits.bed INFO @ Thu, 16 Apr 2020 01:45:41: Done! pass1 - making usageList (6 chroms): 2 millis pass2 - checking and writing primary data (10024 records, 4 fields): 10 millis CompletedMACS2peakCalling INFO @ Thu, 16 Apr 2020 01:45:43: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX6619544/SRX6619544.20_peaks.xls INFO @ Thu, 16 Apr 2020 01:45:43: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX6619544/SRX6619544.20_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 01:45:43: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX6619544/SRX6619544.20_summits.bed INFO @ Thu, 16 Apr 2020 01:45:43: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (4550 records, 4 fields): 5 millis CompletedMACS2peakCalling