Job ID = 5720169 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-04-15T12:51:11 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T12:51:47 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:02:28 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:02:50 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:04:13 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:05:25 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 54,011,278 reads read : 108,022,556 reads written : 108,022,556 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 02:01:56 54011278 reads; of these: 54011278 (100.00%) were paired; of these: 22096695 (40.91%) aligned concordantly 0 times 24799922 (45.92%) aligned concordantly exactly 1 time 7114661 (13.17%) aligned concordantly >1 times ---- 22096695 pairs aligned concordantly 0 times; of these: 14421012 (65.26%) aligned discordantly 1 time ---- 7675683 pairs aligned 0 times concordantly or discordantly; of these: 15351366 mates make up the pairs; of these: 5574267 (36.31%) aligned 0 times 3376874 (22.00%) aligned exactly 1 time 6400225 (41.69%) aligned >1 times 94.84% overall alignment rate Time searching: 02:01:56 Overall time: 02:01:56 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 76 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 7936718 / 46130896 = 0.1720 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 01:39:26: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX6619540/SRX6619540.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX6619540/SRX6619540.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX6619540/SRX6619540.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX6619540/SRX6619540.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 01:39:26: #1 read tag files... INFO @ Thu, 16 Apr 2020 01:39:26: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 01:39:34: 1000000 INFO @ Thu, 16 Apr 2020 01:39:42: 2000000 INFO @ Thu, 16 Apr 2020 01:39:51: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 01:39:56: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX6619540/SRX6619540.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX6619540/SRX6619540.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX6619540/SRX6619540.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX6619540/SRX6619540.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 01:39:56: #1 read tag files... INFO @ Thu, 16 Apr 2020 01:39:56: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 01:39:59: 4000000 INFO @ Thu, 16 Apr 2020 01:40:06: 1000000 INFO @ Thu, 16 Apr 2020 01:40:08: 5000000 INFO @ Thu, 16 Apr 2020 01:40:16: 2000000 INFO @ Thu, 16 Apr 2020 01:40:17: 6000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 01:40:25: 3000000 INFO @ Thu, 16 Apr 2020 01:40:26: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX6619540/SRX6619540.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX6619540/SRX6619540.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX6619540/SRX6619540.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX6619540/SRX6619540.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 01:40:26: #1 read tag files... INFO @ Thu, 16 Apr 2020 01:40:26: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 01:40:26: 7000000 INFO @ Thu, 16 Apr 2020 01:40:35: 4000000 INFO @ Thu, 16 Apr 2020 01:40:36: 1000000 INFO @ Thu, 16 Apr 2020 01:40:36: 8000000 INFO @ Thu, 16 Apr 2020 01:40:45: 5000000 INFO @ Thu, 16 Apr 2020 01:40:45: 9000000 INFO @ Thu, 16 Apr 2020 01:40:46: 2000000 INFO @ Thu, 16 Apr 2020 01:40:54: 6000000 INFO @ Thu, 16 Apr 2020 01:40:55: 10000000 INFO @ Thu, 16 Apr 2020 01:40:55: 3000000 INFO @ Thu, 16 Apr 2020 01:41:04: 7000000 INFO @ Thu, 16 Apr 2020 01:41:05: 11000000 INFO @ Thu, 16 Apr 2020 01:41:05: 4000000 INFO @ Thu, 16 Apr 2020 01:41:14: 8000000 INFO @ Thu, 16 Apr 2020 01:41:14: 12000000 INFO @ Thu, 16 Apr 2020 01:41:15: 5000000 INFO @ Thu, 16 Apr 2020 01:41:23: 9000000 INFO @ Thu, 16 Apr 2020 01:41:24: 13000000 INFO @ Thu, 16 Apr 2020 01:41:25: 6000000 INFO @ Thu, 16 Apr 2020 01:41:33: 14000000 INFO @ Thu, 16 Apr 2020 01:41:34: 10000000 INFO @ Thu, 16 Apr 2020 01:41:34: 7000000 INFO @ Thu, 16 Apr 2020 01:41:42: 15000000 INFO @ Thu, 16 Apr 2020 01:41:43: 11000000 INFO @ Thu, 16 Apr 2020 01:41:44: 8000000 INFO @ Thu, 16 Apr 2020 01:41:52: 16000000 INFO @ Thu, 16 Apr 2020 01:41:53: 12000000 INFO @ Thu, 16 Apr 2020 01:41:54: 9000000 INFO @ Thu, 16 Apr 2020 01:42:02: 13000000 INFO @ Thu, 16 Apr 2020 01:42:03: 17000000 INFO @ Thu, 16 Apr 2020 01:42:04: 10000000 INFO @ Thu, 16 Apr 2020 01:42:12: 14000000 INFO @ Thu, 16 Apr 2020 01:42:13: 18000000 INFO @ Thu, 16 Apr 2020 01:42:14: 11000000 INFO @ Thu, 16 Apr 2020 01:42:21: 15000000 INFO @ Thu, 16 Apr 2020 01:42:23: 12000000 INFO @ Thu, 16 Apr 2020 01:42:24: 19000000 INFO @ Thu, 16 Apr 2020 01:42:31: 16000000 INFO @ Thu, 16 Apr 2020 01:42:33: 20000000 INFO @ Thu, 16 Apr 2020 01:42:33: 13000000 INFO @ Thu, 16 Apr 2020 01:42:41: 17000000 INFO @ Thu, 16 Apr 2020 01:42:42: 21000000 INFO @ Thu, 16 Apr 2020 01:42:43: 14000000 INFO @ Thu, 16 Apr 2020 01:42:52: 18000000 INFO @ Thu, 16 Apr 2020 01:42:52: 15000000 INFO @ Thu, 16 Apr 2020 01:42:53: 22000000 INFO @ Thu, 16 Apr 2020 01:43:02: 19000000 INFO @ Thu, 16 Apr 2020 01:43:02: 16000000 INFO @ Thu, 16 Apr 2020 01:43:04: 23000000 INFO @ Thu, 16 Apr 2020 01:43:11: 20000000 INFO @ Thu, 16 Apr 2020 01:43:13: 17000000 INFO @ Thu, 16 Apr 2020 01:43:15: 24000000 INFO @ Thu, 16 Apr 2020 01:43:21: 21000000 INFO @ Thu, 16 Apr 2020 01:43:24: 18000000 INFO @ Thu, 16 Apr 2020 01:43:26: 25000000 INFO @ Thu, 16 Apr 2020 01:43:31: 22000000 INFO @ Thu, 16 Apr 2020 01:43:34: 19000000 INFO @ Thu, 16 Apr 2020 01:43:36: 26000000 INFO @ Thu, 16 Apr 2020 01:43:42: 23000000 INFO @ Thu, 16 Apr 2020 01:43:43: 20000000 INFO @ Thu, 16 Apr 2020 01:43:47: 27000000 INFO @ Thu, 16 Apr 2020 01:43:52: 24000000 INFO @ Thu, 16 Apr 2020 01:43:53: 21000000 INFO @ Thu, 16 Apr 2020 01:43:57: 28000000 INFO @ Thu, 16 Apr 2020 01:44:02: 25000000 INFO @ Thu, 16 Apr 2020 01:44:04: 22000000 INFO @ Thu, 16 Apr 2020 01:44:07: 29000000 INFO @ Thu, 16 Apr 2020 01:44:13: 26000000 INFO @ Thu, 16 Apr 2020 01:44:15: 23000000 INFO @ Thu, 16 Apr 2020 01:44:18: 30000000 INFO @ Thu, 16 Apr 2020 01:44:23: 27000000 INFO @ Thu, 16 Apr 2020 01:44:26: 24000000 INFO @ Thu, 16 Apr 2020 01:44:28: 31000000 INFO @ Thu, 16 Apr 2020 01:44:33: 28000000 INFO @ Thu, 16 Apr 2020 01:44:38: 25000000 INFO @ Thu, 16 Apr 2020 01:44:38: 32000000 INFO @ Thu, 16 Apr 2020 01:44:43: 29000000 INFO @ Thu, 16 Apr 2020 01:44:49: 26000000 INFO @ Thu, 16 Apr 2020 01:44:49: 33000000 INFO @ Thu, 16 Apr 2020 01:44:53: 30000000 INFO @ Thu, 16 Apr 2020 01:44:59: 34000000 INFO @ Thu, 16 Apr 2020 01:44:59: 27000000 INFO @ Thu, 16 Apr 2020 01:45:03: 31000000 INFO @ Thu, 16 Apr 2020 01:45:09: 35000000 INFO @ Thu, 16 Apr 2020 01:45:10: 28000000 INFO @ Thu, 16 Apr 2020 01:45:13: 32000000 INFO @ Thu, 16 Apr 2020 01:45:20: 36000000 INFO @ Thu, 16 Apr 2020 01:45:20: 29000000 INFO @ Thu, 16 Apr 2020 01:45:23: 33000000 INFO @ Thu, 16 Apr 2020 01:45:30: 37000000 INFO @ Thu, 16 Apr 2020 01:45:31: 30000000 INFO @ Thu, 16 Apr 2020 01:45:33: 34000000 INFO @ Thu, 16 Apr 2020 01:45:40: 38000000 INFO @ Thu, 16 Apr 2020 01:45:41: 31000000 INFO @ Thu, 16 Apr 2020 01:45:43: 35000000 INFO @ Thu, 16 Apr 2020 01:45:50: 39000000 INFO @ Thu, 16 Apr 2020 01:45:51: 32000000 INFO @ Thu, 16 Apr 2020 01:45:54: 36000000 INFO @ Thu, 16 Apr 2020 01:46:00: 40000000 INFO @ Thu, 16 Apr 2020 01:46:02: 33000000 INFO @ Thu, 16 Apr 2020 01:46:04: 37000000 INFO @ Thu, 16 Apr 2020 01:46:10: 41000000 INFO @ Thu, 16 Apr 2020 01:46:12: 34000000 INFO @ Thu, 16 Apr 2020 01:46:14: 38000000 INFO @ Thu, 16 Apr 2020 01:46:21: 42000000 INFO @ Thu, 16 Apr 2020 01:46:23: 35000000 INFO @ Thu, 16 Apr 2020 01:46:24: 39000000 INFO @ Thu, 16 Apr 2020 01:46:31: 43000000 INFO @ Thu, 16 Apr 2020 01:46:33: 36000000 INFO @ Thu, 16 Apr 2020 01:46:34: 40000000 INFO @ Thu, 16 Apr 2020 01:46:41: 44000000 INFO @ Thu, 16 Apr 2020 01:46:43: 37000000 INFO @ Thu, 16 Apr 2020 01:46:44: 41000000 INFO @ Thu, 16 Apr 2020 01:46:51: 45000000 INFO @ Thu, 16 Apr 2020 01:46:54: 38000000 INFO @ Thu, 16 Apr 2020 01:46:54: 42000000 INFO @ Thu, 16 Apr 2020 01:47:01: 46000000 INFO @ Thu, 16 Apr 2020 01:47:04: 39000000 INFO @ Thu, 16 Apr 2020 01:47:05: 43000000 INFO @ Thu, 16 Apr 2020 01:47:12: 47000000 INFO @ Thu, 16 Apr 2020 01:47:14: 40000000 INFO @ Thu, 16 Apr 2020 01:47:15: 44000000 INFO @ Thu, 16 Apr 2020 01:47:22: 48000000 INFO @ Thu, 16 Apr 2020 01:47:24: 41000000 INFO @ Thu, 16 Apr 2020 01:47:25: 45000000 INFO @ Thu, 16 Apr 2020 01:47:32: 49000000 INFO @ Thu, 16 Apr 2020 01:47:34: 42000000 INFO @ Thu, 16 Apr 2020 01:47:35: 46000000 INFO @ Thu, 16 Apr 2020 01:47:42: 50000000 INFO @ Thu, 16 Apr 2020 01:47:45: 43000000 INFO @ Thu, 16 Apr 2020 01:47:45: 47000000 INFO @ Thu, 16 Apr 2020 01:47:52: 51000000 INFO @ Thu, 16 Apr 2020 01:47:55: 44000000 INFO @ Thu, 16 Apr 2020 01:47:56: 48000000 INFO @ Thu, 16 Apr 2020 01:48:02: 52000000 INFO @ Thu, 16 Apr 2020 01:48:05: 45000000 INFO @ Thu, 16 Apr 2020 01:48:06: 49000000 INFO @ Thu, 16 Apr 2020 01:48:13: 53000000 INFO @ Thu, 16 Apr 2020 01:48:15: 46000000 INFO @ Thu, 16 Apr 2020 01:48:16: 50000000 INFO @ Thu, 16 Apr 2020 01:48:23: 54000000 INFO @ Thu, 16 Apr 2020 01:48:25: 47000000 INFO @ Thu, 16 Apr 2020 01:48:26: 51000000 INFO @ Thu, 16 Apr 2020 01:48:33: 55000000 INFO @ Thu, 16 Apr 2020 01:48:36: 48000000 INFO @ Thu, 16 Apr 2020 01:48:36: 52000000 INFO @ Thu, 16 Apr 2020 01:48:43: 56000000 INFO @ Thu, 16 Apr 2020 01:48:46: 49000000 INFO @ Thu, 16 Apr 2020 01:48:47: 53000000 INFO @ Thu, 16 Apr 2020 01:48:53: 57000000 INFO @ Thu, 16 Apr 2020 01:48:56: 50000000 INFO @ Thu, 16 Apr 2020 01:48:57: 54000000 INFO @ Thu, 16 Apr 2020 01:49:04: 58000000 INFO @ Thu, 16 Apr 2020 01:49:06: 51000000 INFO @ Thu, 16 Apr 2020 01:49:07: 55000000 INFO @ Thu, 16 Apr 2020 01:49:14: 59000000 INFO @ Thu, 16 Apr 2020 01:49:16: 52000000 INFO @ Thu, 16 Apr 2020 01:49:17: 56000000 INFO @ Thu, 16 Apr 2020 01:49:23: 60000000 INFO @ Thu, 16 Apr 2020 01:49:27: 53000000 INFO @ Thu, 16 Apr 2020 01:49:27: 57000000 INFO @ Thu, 16 Apr 2020 01:49:33: 61000000 INFO @ Thu, 16 Apr 2020 01:49:36: 54000000 INFO @ Thu, 16 Apr 2020 01:49:37: 58000000 INFO @ Thu, 16 Apr 2020 01:49:42: 62000000 INFO @ Thu, 16 Apr 2020 01:49:46: 55000000 INFO @ Thu, 16 Apr 2020 01:49:47: 59000000 INFO @ Thu, 16 Apr 2020 01:49:52: 63000000 INFO @ Thu, 16 Apr 2020 01:49:57: 56000000 INFO @ Thu, 16 Apr 2020 01:49:58: 60000000 INFO @ Thu, 16 Apr 2020 01:50:02: 64000000 INFO @ Thu, 16 Apr 2020 01:50:07: 57000000 INFO @ Thu, 16 Apr 2020 01:50:08: 61000000 INFO @ Thu, 16 Apr 2020 01:50:13: 65000000 INFO @ Thu, 16 Apr 2020 01:50:18: 58000000 INFO @ Thu, 16 Apr 2020 01:50:18: 62000000 INFO @ Thu, 16 Apr 2020 01:50:23: 66000000 INFO @ Thu, 16 Apr 2020 01:50:28: 59000000 INFO @ Thu, 16 Apr 2020 01:50:28: 63000000 INFO @ Thu, 16 Apr 2020 01:50:33: 67000000 INFO @ Thu, 16 Apr 2020 01:50:38: 60000000 INFO @ Thu, 16 Apr 2020 01:50:39: 64000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Thu, 16 Apr 2020 01:50:42: 68000000 INFO @ Thu, 16 Apr 2020 01:50:48: 61000000 INFO @ Thu, 16 Apr 2020 01:50:49: 65000000 INFO @ Thu, 16 Apr 2020 01:50:51: 69000000 INFO @ Thu, 16 Apr 2020 01:50:59: 62000000 INFO @ Thu, 16 Apr 2020 01:50:59: 66000000 INFO @ Thu, 16 Apr 2020 01:51:01: 70000000 INFO @ Thu, 16 Apr 2020 01:51:09: 67000000 INFO @ Thu, 16 Apr 2020 01:51:09: 63000000 INFO @ Thu, 16 Apr 2020 01:51:11: 71000000 INFO @ Thu, 16 Apr 2020 01:51:18: 68000000 INFO @ Thu, 16 Apr 2020 01:51:19: 64000000 INFO @ Thu, 16 Apr 2020 01:51:22: 72000000 INFO @ Thu, 16 Apr 2020 01:51:27: 69000000 INFO @ Thu, 16 Apr 2020 01:51:29: 65000000 INFO @ Thu, 16 Apr 2020 01:51:32: 73000000 INFO @ Thu, 16 Apr 2020 01:51:37: 70000000 INFO @ Thu, 16 Apr 2020 01:51:39: 66000000 INFO @ Thu, 16 Apr 2020 01:51:42: 74000000 INFO @ Thu, 16 Apr 2020 01:51:47: 71000000 INFO @ Thu, 16 Apr 2020 01:51:49: 67000000 INFO @ Thu, 16 Apr 2020 01:51:53: 75000000 BigWig に変換しました。 INFO @ Thu, 16 Apr 2020 01:51:57: 72000000 INFO @ Thu, 16 Apr 2020 01:51:58: 68000000 INFO @ Thu, 16 Apr 2020 01:52:03: 76000000 INFO @ Thu, 16 Apr 2020 01:52:07: 69000000 INFO @ Thu, 16 Apr 2020 01:52:07: 73000000 INFO @ Thu, 16 Apr 2020 01:52:14: 77000000 INFO @ Thu, 16 Apr 2020 01:52:17: 74000000 INFO @ Thu, 16 Apr 2020 01:52:17: 70000000 INFO @ Thu, 16 Apr 2020 01:52:24: 78000000 INFO @ Thu, 16 Apr 2020 01:52:27: 75000000 INFO @ Thu, 16 Apr 2020 01:52:27: 71000000 INFO @ Thu, 16 Apr 2020 01:52:35: 79000000 INFO @ Thu, 16 Apr 2020 01:52:37: 76000000 INFO @ Thu, 16 Apr 2020 01:52:38: 72000000 INFO @ Thu, 16 Apr 2020 01:52:45: 80000000 INFO @ Thu, 16 Apr 2020 01:52:47: 77000000 INFO @ Thu, 16 Apr 2020 01:52:48: 73000000 INFO @ Thu, 16 Apr 2020 01:52:56: 81000000 INFO @ Thu, 16 Apr 2020 01:52:57: 78000000 INFO @ Thu, 16 Apr 2020 01:52:58: 74000000 INFO @ Thu, 16 Apr 2020 01:53:06: 82000000 INFO @ Thu, 16 Apr 2020 01:53:08: 79000000 INFO @ Thu, 16 Apr 2020 01:53:09: 75000000 INFO @ Thu, 16 Apr 2020 01:53:17: 83000000 INFO @ Thu, 16 Apr 2020 01:53:18: 80000000 INFO @ Thu, 16 Apr 2020 01:53:19: 76000000 INFO @ Thu, 16 Apr 2020 01:53:27: 84000000 INFO @ Thu, 16 Apr 2020 01:53:28: 81000000 INFO @ Thu, 16 Apr 2020 01:53:30: 77000000 INFO @ Thu, 16 Apr 2020 01:53:38: 82000000 INFO @ Thu, 16 Apr 2020 01:53:38: 85000000 INFO @ Thu, 16 Apr 2020 01:53:40: 78000000 INFO @ Thu, 16 Apr 2020 01:53:48: 83000000 INFO @ Thu, 16 Apr 2020 01:53:49: 86000000 INFO @ Thu, 16 Apr 2020 01:53:50: 79000000 INFO @ Thu, 16 Apr 2020 01:53:55: #1 tag size is determined as 150 bps INFO @ Thu, 16 Apr 2020 01:53:55: #1 tag size = 150 INFO @ Thu, 16 Apr 2020 01:53:55: #1 total tags in treatment: 26438496 INFO @ Thu, 16 Apr 2020 01:53:55: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 01:53:55: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 01:53:56: #1 tags after filtering in treatment: 20316506 INFO @ Thu, 16 Apr 2020 01:53:56: #1 Redundant rate of treatment: 0.23 INFO @ Thu, 16 Apr 2020 01:53:56: #1 finished! INFO @ Thu, 16 Apr 2020 01:53:56: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 01:53:56: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 01:53:57: #2 number of paired peaks: 947 WARNING @ Thu, 16 Apr 2020 01:53:57: Fewer paired peaks (947) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 947 pairs to build model! INFO @ Thu, 16 Apr 2020 01:53:57: start model_add_line... INFO @ Thu, 16 Apr 2020 01:53:57: start X-correlation... INFO @ Thu, 16 Apr 2020 01:53:57: end of X-cor INFO @ Thu, 16 Apr 2020 01:53:57: #2 finished! INFO @ Thu, 16 Apr 2020 01:53:57: #2 predicted fragment length is 234 bps INFO @ Thu, 16 Apr 2020 01:53:57: #2 alternative fragment length(s) may be 3,234 bps INFO @ Thu, 16 Apr 2020 01:53:57: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX6619540/SRX6619540.05_model.r WARNING @ Thu, 16 Apr 2020 01:53:57: #2 Since the d (234) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Thu, 16 Apr 2020 01:53:57: #2 You may need to consider one of the other alternative d(s): 3,234 WARNING @ Thu, 16 Apr 2020 01:53:57: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Thu, 16 Apr 2020 01:53:57: #3 Call peaks... INFO @ Thu, 16 Apr 2020 01:53:57: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 01:53:59: 84000000 INFO @ Thu, 16 Apr 2020 01:54:01: 80000000 INFO @ Thu, 16 Apr 2020 01:54:09: 85000000 INFO @ Thu, 16 Apr 2020 01:54:11: 81000000 INFO @ Thu, 16 Apr 2020 01:54:19: 86000000 INFO @ Thu, 16 Apr 2020 01:54:21: 82000000 INFO @ Thu, 16 Apr 2020 01:54:25: #1 tag size is determined as 150 bps INFO @ Thu, 16 Apr 2020 01:54:25: #1 tag size = 150 INFO @ Thu, 16 Apr 2020 01:54:25: #1 total tags in treatment: 26438496 INFO @ Thu, 16 Apr 2020 01:54:25: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 01:54:25: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 01:54:25: #1 tags after filtering in treatment: 20316506 INFO @ Thu, 16 Apr 2020 01:54:25: #1 Redundant rate of treatment: 0.23 INFO @ Thu, 16 Apr 2020 01:54:25: #1 finished! INFO @ Thu, 16 Apr 2020 01:54:25: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 01:54:25: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 01:54:27: #2 number of paired peaks: 947 WARNING @ Thu, 16 Apr 2020 01:54:27: Fewer paired peaks (947) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 947 pairs to build model! INFO @ Thu, 16 Apr 2020 01:54:27: start model_add_line... INFO @ Thu, 16 Apr 2020 01:54:27: start X-correlation... INFO @ Thu, 16 Apr 2020 01:54:27: end of X-cor INFO @ Thu, 16 Apr 2020 01:54:27: #2 finished! INFO @ Thu, 16 Apr 2020 01:54:27: #2 predicted fragment length is 234 bps INFO @ Thu, 16 Apr 2020 01:54:27: #2 alternative fragment length(s) may be 3,234 bps INFO @ Thu, 16 Apr 2020 01:54:27: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX6619540/SRX6619540.10_model.r WARNING @ Thu, 16 Apr 2020 01:54:27: #2 Since the d (234) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Thu, 16 Apr 2020 01:54:27: #2 You may need to consider one of the other alternative d(s): 3,234 WARNING @ Thu, 16 Apr 2020 01:54:27: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Thu, 16 Apr 2020 01:54:27: #3 Call peaks... INFO @ Thu, 16 Apr 2020 01:54:27: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 01:54:30: 83000000 INFO @ Thu, 16 Apr 2020 01:54:40: 84000000 INFO @ Thu, 16 Apr 2020 01:54:48: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 01:54:49: 85000000 INFO @ Thu, 16 Apr 2020 01:54:58: 86000000 INFO @ Thu, 16 Apr 2020 01:55:04: #1 tag size is determined as 150 bps INFO @ Thu, 16 Apr 2020 01:55:04: #1 tag size = 150 INFO @ Thu, 16 Apr 2020 01:55:04: #1 total tags in treatment: 26438496 INFO @ Thu, 16 Apr 2020 01:55:04: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 01:55:04: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 01:55:04: #1 tags after filtering in treatment: 20316506 INFO @ Thu, 16 Apr 2020 01:55:04: #1 Redundant rate of treatment: 0.23 INFO @ Thu, 16 Apr 2020 01:55:04: #1 finished! INFO @ Thu, 16 Apr 2020 01:55:04: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 01:55:04: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 01:55:05: #2 number of paired peaks: 947 WARNING @ Thu, 16 Apr 2020 01:55:05: Fewer paired peaks (947) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 947 pairs to build model! INFO @ Thu, 16 Apr 2020 01:55:05: start model_add_line... INFO @ Thu, 16 Apr 2020 01:55:06: start X-correlation... INFO @ Thu, 16 Apr 2020 01:55:06: end of X-cor INFO @ Thu, 16 Apr 2020 01:55:06: #2 finished! INFO @ Thu, 16 Apr 2020 01:55:06: #2 predicted fragment length is 234 bps INFO @ Thu, 16 Apr 2020 01:55:06: #2 alternative fragment length(s) may be 3,234 bps INFO @ Thu, 16 Apr 2020 01:55:06: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX6619540/SRX6619540.20_model.r WARNING @ Thu, 16 Apr 2020 01:55:06: #2 Since the d (234) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Thu, 16 Apr 2020 01:55:06: #2 You may need to consider one of the other alternative d(s): 3,234 WARNING @ Thu, 16 Apr 2020 01:55:06: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Thu, 16 Apr 2020 01:55:06: #3 Call peaks... INFO @ Thu, 16 Apr 2020 01:55:06: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 01:55:09: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX6619540/SRX6619540.05_peaks.xls INFO @ Thu, 16 Apr 2020 01:55:09: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX6619540/SRX6619540.05_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 01:55:09: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX6619540/SRX6619540.05_summits.bed INFO @ Thu, 16 Apr 2020 01:55:09: Done! pass1 - making usageList (6 chroms): 2 millis pass2 - checking and writing primary data (11478 records, 4 fields): 12 millis CompletedMACS2peakCalling INFO @ Thu, 16 Apr 2020 01:55:18: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 01:55:38: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX6619540/SRX6619540.10_peaks.xls INFO @ Thu, 16 Apr 2020 01:55:38: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX6619540/SRX6619540.10_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 01:55:38: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX6619540/SRX6619540.10_summits.bed INFO @ Thu, 16 Apr 2020 01:55:38: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (6202 records, 4 fields): 7 millis CompletedMACS2peakCalling INFO @ Thu, 16 Apr 2020 01:55:58: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 01:56:18: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX6619540/SRX6619540.20_peaks.xls INFO @ Thu, 16 Apr 2020 01:56:18: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX6619540/SRX6619540.20_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 01:56:18: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX6619540/SRX6619540.20_summits.bed INFO @ Thu, 16 Apr 2020 01:56:18: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (2308 records, 4 fields): 4 millis CompletedMACS2peakCalling