Job ID = 5720168 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-04-15T12:53:47 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 32,748,000 reads read : 65,496,000 reads written : 65,496,000 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:57:57 32748000 reads; of these: 32748000 (100.00%) were paired; of these: 17275297 (52.75%) aligned concordantly 0 times 12899232 (39.39%) aligned concordantly exactly 1 time 2573471 (7.86%) aligned concordantly >1 times ---- 17275297 pairs aligned concordantly 0 times; of these: 8513094 (49.28%) aligned discordantly 1 time ---- 8762203 pairs aligned 0 times concordantly or discordantly; of these: 17524406 mates make up the pairs; of these: 14766769 (84.26%) aligned 0 times 1099499 (6.27%) aligned exactly 1 time 1658138 (9.46%) aligned >1 times 77.45% overall alignment rate Time searching: 00:57:57 Overall time: 00:57:57 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 40 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 3188291 / 23537647 = 0.1355 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Wed, 15 Apr 2020 23:48:28: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX6619539/SRX6619539.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX6619539/SRX6619539.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX6619539/SRX6619539.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX6619539/SRX6619539.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 15 Apr 2020 23:48:28: #1 read tag files... INFO @ Wed, 15 Apr 2020 23:48:28: #1 read treatment tags... INFO @ Wed, 15 Apr 2020 23:48:38: 1000000 INFO @ Wed, 15 Apr 2020 23:48:48: 2000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Wed, 15 Apr 2020 23:48:57: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX6619539/SRX6619539.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX6619539/SRX6619539.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX6619539/SRX6619539.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX6619539/SRX6619539.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 15 Apr 2020 23:48:57: #1 read tag files... INFO @ Wed, 15 Apr 2020 23:48:57: #1 read treatment tags... INFO @ Wed, 15 Apr 2020 23:48:57: 3000000 INFO @ Wed, 15 Apr 2020 23:49:07: 1000000 INFO @ Wed, 15 Apr 2020 23:49:08: 4000000 INFO @ Wed, 15 Apr 2020 23:49:17: 2000000 INFO @ Wed, 15 Apr 2020 23:49:19: 5000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Wed, 15 Apr 2020 23:49:28: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX6619539/SRX6619539.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX6619539/SRX6619539.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX6619539/SRX6619539.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX6619539/SRX6619539.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 15 Apr 2020 23:49:28: #1 read tag files... INFO @ Wed, 15 Apr 2020 23:49:28: #1 read treatment tags... INFO @ Wed, 15 Apr 2020 23:49:29: 3000000 INFO @ Wed, 15 Apr 2020 23:49:30: 6000000 INFO @ Wed, 15 Apr 2020 23:49:40: 4000000 INFO @ Wed, 15 Apr 2020 23:49:40: 1000000 INFO @ Wed, 15 Apr 2020 23:49:41: 7000000 INFO @ Wed, 15 Apr 2020 23:49:51: 5000000 INFO @ Wed, 15 Apr 2020 23:49:52: 2000000 INFO @ Wed, 15 Apr 2020 23:49:52: 8000000 INFO @ Wed, 15 Apr 2020 23:50:02: 3000000 INFO @ Wed, 15 Apr 2020 23:50:03: 6000000 INFO @ Wed, 15 Apr 2020 23:50:03: 9000000 INFO @ Wed, 15 Apr 2020 23:50:12: 4000000 INFO @ Wed, 15 Apr 2020 23:50:13: 10000000 INFO @ Wed, 15 Apr 2020 23:50:14: 7000000 INFO @ Wed, 15 Apr 2020 23:50:23: 5000000 INFO @ Wed, 15 Apr 2020 23:50:24: 11000000 INFO @ Wed, 15 Apr 2020 23:50:24: 8000000 INFO @ Wed, 15 Apr 2020 23:50:34: 6000000 INFO @ Wed, 15 Apr 2020 23:50:34: 9000000 INFO @ Wed, 15 Apr 2020 23:50:35: 12000000 INFO @ Wed, 15 Apr 2020 23:50:43: 10000000 INFO @ Wed, 15 Apr 2020 23:50:43: 7000000 INFO @ Wed, 15 Apr 2020 23:50:44: 13000000 INFO @ Wed, 15 Apr 2020 23:50:52: 11000000 INFO @ Wed, 15 Apr 2020 23:50:53: 8000000 INFO @ Wed, 15 Apr 2020 23:50:54: 14000000 INFO @ Wed, 15 Apr 2020 23:51:01: 12000000 INFO @ Wed, 15 Apr 2020 23:51:02: 9000000 INFO @ Wed, 15 Apr 2020 23:51:03: 15000000 INFO @ Wed, 15 Apr 2020 23:51:11: 13000000 INFO @ Wed, 15 Apr 2020 23:51:12: 10000000 INFO @ Wed, 15 Apr 2020 23:51:13: 16000000 INFO @ Wed, 15 Apr 2020 23:51:20: 14000000 INFO @ Wed, 15 Apr 2020 23:51:21: 11000000 INFO @ Wed, 15 Apr 2020 23:51:22: 17000000 INFO @ Wed, 15 Apr 2020 23:51:29: 15000000 INFO @ Wed, 15 Apr 2020 23:51:31: 12000000 INFO @ Wed, 15 Apr 2020 23:51:32: 18000000 INFO @ Wed, 15 Apr 2020 23:51:38: 16000000 INFO @ Wed, 15 Apr 2020 23:51:40: 13000000 INFO @ Wed, 15 Apr 2020 23:51:41: 19000000 INFO @ Wed, 15 Apr 2020 23:51:48: 17000000 INFO @ Wed, 15 Apr 2020 23:51:50: 14000000 INFO @ Wed, 15 Apr 2020 23:51:51: 20000000 INFO @ Wed, 15 Apr 2020 23:51:57: 18000000 INFO @ Wed, 15 Apr 2020 23:51:59: 15000000 INFO @ Wed, 15 Apr 2020 23:52:00: 21000000 INFO @ Wed, 15 Apr 2020 23:52:06: 19000000 INFO @ Wed, 15 Apr 2020 23:52:09: 16000000 INFO @ Wed, 15 Apr 2020 23:52:10: 22000000 INFO @ Wed, 15 Apr 2020 23:52:15: 20000000 INFO @ Wed, 15 Apr 2020 23:52:18: 17000000 INFO @ Wed, 15 Apr 2020 23:52:19: 23000000 INFO @ Wed, 15 Apr 2020 23:52:24: 21000000 INFO @ Wed, 15 Apr 2020 23:52:28: 18000000 INFO @ Wed, 15 Apr 2020 23:52:29: 24000000 INFO @ Wed, 15 Apr 2020 23:52:34: 22000000 INFO @ Wed, 15 Apr 2020 23:52:37: 19000000 INFO @ Wed, 15 Apr 2020 23:52:38: 25000000 INFO @ Wed, 15 Apr 2020 23:52:43: 23000000 INFO @ Wed, 15 Apr 2020 23:52:47: 20000000 INFO @ Wed, 15 Apr 2020 23:52:48: 26000000 INFO @ Wed, 15 Apr 2020 23:52:53: 24000000 INFO @ Wed, 15 Apr 2020 23:52:56: 21000000 INFO @ Wed, 15 Apr 2020 23:52:58: 27000000 INFO @ Wed, 15 Apr 2020 23:53:03: 25000000 INFO @ Wed, 15 Apr 2020 23:53:05: 22000000 INFO @ Wed, 15 Apr 2020 23:53:07: 28000000 INFO @ Wed, 15 Apr 2020 23:53:13: 26000000 INFO @ Wed, 15 Apr 2020 23:53:15: 23000000 INFO @ Wed, 15 Apr 2020 23:53:17: 29000000 INFO @ Wed, 15 Apr 2020 23:53:22: 27000000 INFO @ Wed, 15 Apr 2020 23:53:24: 24000000 INFO @ Wed, 15 Apr 2020 23:53:27: 30000000 INFO @ Wed, 15 Apr 2020 23:53:32: 28000000 INFO @ Wed, 15 Apr 2020 23:53:33: 25000000 INFO @ Wed, 15 Apr 2020 23:53:36: 31000000 INFO @ Wed, 15 Apr 2020 23:53:42: 29000000 INFO @ Wed, 15 Apr 2020 23:53:43: 26000000 INFO @ Wed, 15 Apr 2020 23:53:46: 32000000 INFO @ Wed, 15 Apr 2020 23:53:51: 30000000 INFO @ Wed, 15 Apr 2020 23:53:52: 27000000 INFO @ Wed, 15 Apr 2020 23:53:56: 33000000 INFO @ Wed, 15 Apr 2020 23:54:01: 31000000 INFO @ Wed, 15 Apr 2020 23:54:01: 28000000 INFO @ Wed, 15 Apr 2020 23:54:06: 34000000 INFO @ Wed, 15 Apr 2020 23:54:11: 29000000 INFO @ Wed, 15 Apr 2020 23:54:11: 32000000 INFO @ Wed, 15 Apr 2020 23:54:16: 35000000 INFO @ Wed, 15 Apr 2020 23:54:20: 30000000 INFO @ Wed, 15 Apr 2020 23:54:21: 33000000 INFO @ Wed, 15 Apr 2020 23:54:26: 36000000 INFO @ Wed, 15 Apr 2020 23:54:30: 31000000 INFO @ Wed, 15 Apr 2020 23:54:31: 34000000 INFO @ Wed, 15 Apr 2020 23:54:36: 37000000 INFO @ Wed, 15 Apr 2020 23:54:39: 32000000 INFO @ Wed, 15 Apr 2020 23:54:40: 35000000 INFO @ Wed, 15 Apr 2020 23:54:46: 38000000 INFO @ Wed, 15 Apr 2020 23:54:49: 33000000 INFO @ Wed, 15 Apr 2020 23:54:50: 36000000 INFO @ Wed, 15 Apr 2020 23:54:55: 39000000 INFO @ Wed, 15 Apr 2020 23:54:58: 34000000 INFO @ Wed, 15 Apr 2020 23:55:00: 37000000 INFO @ Wed, 15 Apr 2020 23:55:05: 40000000 INFO @ Wed, 15 Apr 2020 23:55:08: 35000000 INFO @ Wed, 15 Apr 2020 23:55:10: 38000000 INFO @ Wed, 15 Apr 2020 23:55:14: 41000000 INFO @ Wed, 15 Apr 2020 23:55:17: 36000000 INFO @ Wed, 15 Apr 2020 23:55:20: 39000000 INFO @ Wed, 15 Apr 2020 23:55:24: 42000000 INFO @ Wed, 15 Apr 2020 23:55:27: 37000000 INFO @ Wed, 15 Apr 2020 23:55:29: 40000000 INFO @ Wed, 15 Apr 2020 23:55:33: 43000000 INFO @ Wed, 15 Apr 2020 23:55:37: 38000000 INFO @ Wed, 15 Apr 2020 23:55:39: 41000000 INFO @ Wed, 15 Apr 2020 23:55:43: 44000000 INFO @ Wed, 15 Apr 2020 23:55:46: #1 tag size is determined as 150 bps INFO @ Wed, 15 Apr 2020 23:55:46: #1 tag size = 150 INFO @ Wed, 15 Apr 2020 23:55:46: #1 total tags in treatment: 13220858 INFO @ Wed, 15 Apr 2020 23:55:46: #1 user defined the maximum tags... INFO @ Wed, 15 Apr 2020 23:55:46: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 15 Apr 2020 23:55:47: #1 tags after filtering in treatment: 11328772 INFO @ Wed, 15 Apr 2020 23:55:47: #1 Redundant rate of treatment: 0.14 INFO @ Wed, 15 Apr 2020 23:55:47: #1 finished! INFO @ Wed, 15 Apr 2020 23:55:47: #2 Build Peak Model... INFO @ Wed, 15 Apr 2020 23:55:47: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 15 Apr 2020 23:55:47: 39000000 INFO @ Wed, 15 Apr 2020 23:55:47: #2 number of paired peaks: 301 WARNING @ Wed, 15 Apr 2020 23:55:47: Fewer paired peaks (301) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 301 pairs to build model! INFO @ Wed, 15 Apr 2020 23:55:47: start model_add_line... INFO @ Wed, 15 Apr 2020 23:55:47: start X-correlation... INFO @ Wed, 15 Apr 2020 23:55:47: end of X-cor INFO @ Wed, 15 Apr 2020 23:55:47: #2 finished! INFO @ Wed, 15 Apr 2020 23:55:47: #2 predicted fragment length is 208 bps INFO @ Wed, 15 Apr 2020 23:55:47: #2 alternative fragment length(s) may be 208 bps INFO @ Wed, 15 Apr 2020 23:55:47: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX6619539/SRX6619539.05_model.r WARNING @ Wed, 15 Apr 2020 23:55:47: #2 Since the d (208) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Wed, 15 Apr 2020 23:55:47: #2 You may need to consider one of the other alternative d(s): 208 WARNING @ Wed, 15 Apr 2020 23:55:47: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Wed, 15 Apr 2020 23:55:47: #3 Call peaks... INFO @ Wed, 15 Apr 2020 23:55:47: #3 Pre-compute pvalue-qvalue table... INFO @ Wed, 15 Apr 2020 23:55:49: 42000000 INFO @ Wed, 15 Apr 2020 23:55:56: 40000000 INFO @ Wed, 15 Apr 2020 23:55:58: 43000000 INFO @ Wed, 15 Apr 2020 23:56:05: 41000000 INFO @ Wed, 15 Apr 2020 23:56:07: 44000000 INFO @ Wed, 15 Apr 2020 23:56:10: #3 Call peaks for each chromosome... INFO @ Wed, 15 Apr 2020 23:56:11: #1 tag size is determined as 150 bps INFO @ Wed, 15 Apr 2020 23:56:11: #1 tag size = 150 INFO @ Wed, 15 Apr 2020 23:56:11: #1 total tags in treatment: 13220858 INFO @ Wed, 15 Apr 2020 23:56:11: #1 user defined the maximum tags... INFO @ Wed, 15 Apr 2020 23:56:11: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 15 Apr 2020 23:56:11: #1 tags after filtering in treatment: 11328772 INFO @ Wed, 15 Apr 2020 23:56:11: #1 Redundant rate of treatment: 0.14 INFO @ Wed, 15 Apr 2020 23:56:11: #1 finished! INFO @ Wed, 15 Apr 2020 23:56:11: #2 Build Peak Model... INFO @ Wed, 15 Apr 2020 23:56:11: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 15 Apr 2020 23:56:12: #2 number of paired peaks: 301 WARNING @ Wed, 15 Apr 2020 23:56:12: Fewer paired peaks (301) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 301 pairs to build model! INFO @ Wed, 15 Apr 2020 23:56:12: start model_add_line... INFO @ Wed, 15 Apr 2020 23:56:12: start X-correlation... INFO @ Wed, 15 Apr 2020 23:56:12: end of X-cor INFO @ Wed, 15 Apr 2020 23:56:12: #2 finished! INFO @ Wed, 15 Apr 2020 23:56:12: #2 predicted fragment length is 208 bps INFO @ Wed, 15 Apr 2020 23:56:12: #2 alternative fragment length(s) may be 208 bps INFO @ Wed, 15 Apr 2020 23:56:12: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX6619539/SRX6619539.10_model.r WARNING @ Wed, 15 Apr 2020 23:56:12: #2 Since the d (208) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Wed, 15 Apr 2020 23:56:12: #2 You may need to consider one of the other alternative d(s): 208 WARNING @ Wed, 15 Apr 2020 23:56:12: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Wed, 15 Apr 2020 23:56:12: #3 Call peaks... INFO @ Wed, 15 Apr 2020 23:56:12: #3 Pre-compute pvalue-qvalue table... INFO @ Wed, 15 Apr 2020 23:56:14: 42000000 INFO @ Wed, 15 Apr 2020 23:56:20: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX6619539/SRX6619539.05_peaks.xls INFO @ Wed, 15 Apr 2020 23:56:20: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX6619539/SRX6619539.05_peaks.narrowPeak INFO @ Wed, 15 Apr 2020 23:56:20: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX6619539/SRX6619539.05_summits.bed INFO @ Wed, 15 Apr 2020 23:56:20: Done! pass1 - making usageList (7 chroms): 0 millis pass2 - checking and writing primary data (489 records, 4 fields): 3 millis CompletedMACS2peakCalling INFO @ Wed, 15 Apr 2020 23:56:23: 43000000 INFO @ Wed, 15 Apr 2020 23:56:31: 44000000 INFO @ Wed, 15 Apr 2020 23:56:34: #1 tag size is determined as 150 bps INFO @ Wed, 15 Apr 2020 23:56:34: #1 tag size = 150 INFO @ Wed, 15 Apr 2020 23:56:34: #1 total tags in treatment: 13220858 INFO @ Wed, 15 Apr 2020 23:56:34: #1 user defined the maximum tags... INFO @ Wed, 15 Apr 2020 23:56:34: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 15 Apr 2020 23:56:35: #3 Call peaks for each chromosome... INFO @ Wed, 15 Apr 2020 23:56:35: #1 tags after filtering in treatment: 11328772 INFO @ Wed, 15 Apr 2020 23:56:35: #1 Redundant rate of treatment: 0.14 INFO @ Wed, 15 Apr 2020 23:56:35: #1 finished! INFO @ Wed, 15 Apr 2020 23:56:35: #2 Build Peak Model... INFO @ Wed, 15 Apr 2020 23:56:35: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 15 Apr 2020 23:56:35: #2 number of paired peaks: 301 WARNING @ Wed, 15 Apr 2020 23:56:35: Fewer paired peaks (301) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 301 pairs to build model! INFO @ Wed, 15 Apr 2020 23:56:35: start model_add_line... INFO @ Wed, 15 Apr 2020 23:56:35: start X-correlation... INFO @ Wed, 15 Apr 2020 23:56:36: end of X-cor INFO @ Wed, 15 Apr 2020 23:56:36: #2 finished! INFO @ Wed, 15 Apr 2020 23:56:36: #2 predicted fragment length is 208 bps INFO @ Wed, 15 Apr 2020 23:56:36: #2 alternative fragment length(s) may be 208 bps INFO @ Wed, 15 Apr 2020 23:56:36: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX6619539/SRX6619539.20_model.r WARNING @ Wed, 15 Apr 2020 23:56:36: #2 Since the d (208) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Wed, 15 Apr 2020 23:56:36: #2 You may need to consider one of the other alternative d(s): 208 WARNING @ Wed, 15 Apr 2020 23:56:36: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Wed, 15 Apr 2020 23:56:36: #3 Call peaks... INFO @ Wed, 15 Apr 2020 23:56:36: #3 Pre-compute pvalue-qvalue table... INFO @ Wed, 15 Apr 2020 23:56:45: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX6619539/SRX6619539.10_peaks.xls INFO @ Wed, 15 Apr 2020 23:56:45: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX6619539/SRX6619539.10_peaks.narrowPeak INFO @ Wed, 15 Apr 2020 23:56:45: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX6619539/SRX6619539.10_summits.bed INFO @ Wed, 15 Apr 2020 23:56:45: Done! pass1 - making usageList (7 chroms): 0 millis pass2 - checking and writing primary data (339 records, 4 fields): 1 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... INFO @ Wed, 15 Apr 2020 23:56:57: #3 Call peaks for each chromosome... INFO @ Wed, 15 Apr 2020 23:57:08: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX6619539/SRX6619539.20_peaks.xls INFO @ Wed, 15 Apr 2020 23:57:08: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX6619539/SRX6619539.20_peaks.narrowPeak INFO @ Wed, 15 Apr 2020 23:57:08: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX6619539/SRX6619539.20_summits.bed INFO @ Wed, 15 Apr 2020 23:57:08: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (218 records, 4 fields): 1 millis CompletedMACS2peakCalling BigWig に変換しました。