Job ID = 5720160 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-04-15T12:26:54 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T12:26:54 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T13:04:12 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 32,382,004 reads read : 64,764,008 reads written : 64,764,008 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:19:48 32382004 reads; of these: 32382004 (100.00%) were paired; of these: 16044186 (49.55%) aligned concordantly 0 times 13665087 (42.20%) aligned concordantly exactly 1 time 2672731 (8.25%) aligned concordantly >1 times ---- 16044186 pairs aligned concordantly 0 times; of these: 9512928 (59.29%) aligned discordantly 1 time ---- 6531258 pairs aligned 0 times concordantly or discordantly; of these: 13062516 mates make up the pairs; of these: 9704224 (74.29%) aligned 0 times 1560725 (11.95%) aligned exactly 1 time 1797567 (13.76%) aligned >1 times 85.02% overall alignment rate Time searching: 01:19:49 Overall time: 01:19:49 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 40 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 3194728 / 25058925 = 0.1275 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 00:08:43: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX6619531/SRX6619531.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX6619531/SRX6619531.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX6619531/SRX6619531.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX6619531/SRX6619531.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 00:08:43: #1 read tag files... INFO @ Thu, 16 Apr 2020 00:08:43: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 00:08:54: 1000000 INFO @ Thu, 16 Apr 2020 00:09:04: 2000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 00:09:13: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX6619531/SRX6619531.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX6619531/SRX6619531.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX6619531/SRX6619531.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX6619531/SRX6619531.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 00:09:13: #1 read tag files... INFO @ Thu, 16 Apr 2020 00:09:13: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 00:09:14: 3000000 INFO @ Thu, 16 Apr 2020 00:09:23: 1000000 INFO @ Thu, 16 Apr 2020 00:09:24: 4000000 INFO @ Thu, 16 Apr 2020 00:09:33: 2000000 INFO @ Thu, 16 Apr 2020 00:09:35: 5000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 00:09:43: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX6619531/SRX6619531.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX6619531/SRX6619531.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX6619531/SRX6619531.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX6619531/SRX6619531.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 00:09:43: #1 read tag files... INFO @ Thu, 16 Apr 2020 00:09:43: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 00:09:44: 3000000 INFO @ Thu, 16 Apr 2020 00:09:48: 6000000 INFO @ Thu, 16 Apr 2020 00:09:54: 1000000 INFO @ Thu, 16 Apr 2020 00:09:54: 4000000 INFO @ Thu, 16 Apr 2020 00:09:57: 7000000 INFO @ Thu, 16 Apr 2020 00:10:05: 2000000 INFO @ Thu, 16 Apr 2020 00:10:05: 5000000 INFO @ Thu, 16 Apr 2020 00:10:07: 8000000 INFO @ Thu, 16 Apr 2020 00:10:15: 3000000 INFO @ Thu, 16 Apr 2020 00:10:15: 6000000 INFO @ Thu, 16 Apr 2020 00:10:16: 9000000 INFO @ Thu, 16 Apr 2020 00:10:25: 4000000 INFO @ Thu, 16 Apr 2020 00:10:25: 7000000 INFO @ Thu, 16 Apr 2020 00:10:25: 10000000 INFO @ Thu, 16 Apr 2020 00:10:35: 11000000 INFO @ Thu, 16 Apr 2020 00:10:35: 5000000 INFO @ Thu, 16 Apr 2020 00:10:35: 8000000 INFO @ Thu, 16 Apr 2020 00:10:44: 12000000 INFO @ Thu, 16 Apr 2020 00:10:46: 9000000 INFO @ Thu, 16 Apr 2020 00:10:46: 6000000 INFO @ Thu, 16 Apr 2020 00:10:54: 13000000 INFO @ Thu, 16 Apr 2020 00:10:56: 10000000 INFO @ Thu, 16 Apr 2020 00:10:56: 7000000 INFO @ Thu, 16 Apr 2020 00:11:03: 14000000 INFO @ Thu, 16 Apr 2020 00:11:06: 11000000 INFO @ Thu, 16 Apr 2020 00:11:06: 8000000 INFO @ Thu, 16 Apr 2020 00:11:13: 15000000 INFO @ Thu, 16 Apr 2020 00:11:17: 12000000 INFO @ Thu, 16 Apr 2020 00:11:17: 9000000 INFO @ Thu, 16 Apr 2020 00:11:23: 16000000 INFO @ Thu, 16 Apr 2020 00:11:28: 13000000 INFO @ Thu, 16 Apr 2020 00:11:28: 10000000 INFO @ Thu, 16 Apr 2020 00:11:32: 17000000 INFO @ Thu, 16 Apr 2020 00:11:38: 14000000 INFO @ Thu, 16 Apr 2020 00:11:38: 11000000 INFO @ Thu, 16 Apr 2020 00:11:41: 18000000 INFO @ Thu, 16 Apr 2020 00:11:48: 15000000 INFO @ Thu, 16 Apr 2020 00:11:49: 12000000 INFO @ Thu, 16 Apr 2020 00:11:54: 19000000 INFO @ Thu, 16 Apr 2020 00:11:59: 13000000 INFO @ Thu, 16 Apr 2020 00:11:59: 16000000 INFO @ Thu, 16 Apr 2020 00:12:05: 20000000 INFO @ Thu, 16 Apr 2020 00:12:09: 14000000 INFO @ Thu, 16 Apr 2020 00:12:09: 17000000 INFO @ Thu, 16 Apr 2020 00:12:14: 21000000 INFO @ Thu, 16 Apr 2020 00:12:20: 15000000 INFO @ Thu, 16 Apr 2020 00:12:20: 18000000 INFO @ Thu, 16 Apr 2020 00:12:23: 22000000 INFO @ Thu, 16 Apr 2020 00:12:30: 19000000 INFO @ Thu, 16 Apr 2020 00:12:30: 16000000 INFO @ Thu, 16 Apr 2020 00:12:31: 23000000 INFO @ Thu, 16 Apr 2020 00:12:39: 24000000 INFO @ Thu, 16 Apr 2020 00:12:39: 20000000 INFO @ Thu, 16 Apr 2020 00:12:39: 17000000 INFO @ Thu, 16 Apr 2020 00:12:47: 25000000 INFO @ Thu, 16 Apr 2020 00:12:49: 21000000 INFO @ Thu, 16 Apr 2020 00:12:49: 18000000 INFO @ Thu, 16 Apr 2020 00:12:54: 26000000 INFO @ Thu, 16 Apr 2020 00:12:58: 22000000 INFO @ Thu, 16 Apr 2020 00:12:59: 19000000 INFO @ Thu, 16 Apr 2020 00:13:02: 27000000 INFO @ Thu, 16 Apr 2020 00:13:09: 23000000 INFO @ Thu, 16 Apr 2020 00:13:09: 20000000 INFO @ Thu, 16 Apr 2020 00:13:10: 28000000 INFO @ Thu, 16 Apr 2020 00:13:18: 29000000 INFO @ Thu, 16 Apr 2020 00:13:18: 24000000 INFO @ Thu, 16 Apr 2020 00:13:19: 21000000 INFO @ Thu, 16 Apr 2020 00:13:25: 30000000 INFO @ Thu, 16 Apr 2020 00:13:28: 25000000 INFO @ Thu, 16 Apr 2020 00:13:28: 22000000 INFO @ Thu, 16 Apr 2020 00:13:33: 31000000 INFO @ Thu, 16 Apr 2020 00:13:37: 26000000 INFO @ Thu, 16 Apr 2020 00:13:38: 23000000 INFO @ Thu, 16 Apr 2020 00:13:41: 32000000 INFO @ Thu, 16 Apr 2020 00:13:47: 27000000 INFO @ Thu, 16 Apr 2020 00:13:47: 24000000 INFO @ Thu, 16 Apr 2020 00:13:50: 33000000 INFO @ Thu, 16 Apr 2020 00:13:56: 25000000 INFO @ Thu, 16 Apr 2020 00:13:57: 28000000 INFO @ Thu, 16 Apr 2020 00:13:57: 34000000 INFO @ Thu, 16 Apr 2020 00:14:05: 26000000 INFO @ Thu, 16 Apr 2020 00:14:06: 35000000 INFO @ Thu, 16 Apr 2020 00:14:06: 29000000 INFO @ Thu, 16 Apr 2020 00:14:13: 36000000 INFO @ Thu, 16 Apr 2020 00:14:14: 27000000 INFO @ Thu, 16 Apr 2020 00:14:14: 30000000 INFO @ Thu, 16 Apr 2020 00:14:21: 37000000 INFO @ Thu, 16 Apr 2020 00:14:22: 28000000 INFO @ Thu, 16 Apr 2020 00:14:23: 31000000 INFO @ Thu, 16 Apr 2020 00:14:29: 38000000 INFO @ Thu, 16 Apr 2020 00:14:31: 29000000 INFO @ Thu, 16 Apr 2020 00:14:31: 32000000 INFO @ Thu, 16 Apr 2020 00:14:37: 39000000 INFO @ Thu, 16 Apr 2020 00:14:40: 30000000 INFO @ Thu, 16 Apr 2020 00:14:40: 33000000 INFO @ Thu, 16 Apr 2020 00:14:45: 40000000 INFO @ Thu, 16 Apr 2020 00:14:48: 31000000 INFO @ Thu, 16 Apr 2020 00:14:48: 34000000 INFO @ Thu, 16 Apr 2020 00:14:53: 41000000 INFO @ Thu, 16 Apr 2020 00:14:56: 32000000 INFO @ Thu, 16 Apr 2020 00:14:57: 35000000 INFO @ Thu, 16 Apr 2020 00:15:01: 42000000 INFO @ Thu, 16 Apr 2020 00:15:05: 33000000 INFO @ Thu, 16 Apr 2020 00:15:05: 36000000 INFO @ Thu, 16 Apr 2020 00:15:11: 43000000 INFO @ Thu, 16 Apr 2020 00:15:15: 34000000 INFO @ Thu, 16 Apr 2020 00:15:15: 37000000 INFO @ Thu, 16 Apr 2020 00:15:24: 35000000 INFO @ Thu, 16 Apr 2020 00:15:24: 38000000 INFO @ Thu, 16 Apr 2020 00:15:24: 44000000 INFO @ Thu, 16 Apr 2020 00:15:33: 36000000 INFO @ Thu, 16 Apr 2020 00:15:33: 39000000 INFO @ Thu, 16 Apr 2020 00:15:37: 45000000 INFO @ Thu, 16 Apr 2020 00:15:43: 37000000 INFO @ Thu, 16 Apr 2020 00:15:44: 40000000 INFO @ Thu, 16 Apr 2020 00:15:50: 46000000 INFO @ Thu, 16 Apr 2020 00:15:53: 38000000 INFO @ Thu, 16 Apr 2020 00:15:53: 41000000 INFO @ Thu, 16 Apr 2020 00:16:00: 47000000 INFO @ Thu, 16 Apr 2020 00:16:01: 42000000 INFO @ Thu, 16 Apr 2020 00:16:02: 39000000 INFO @ Thu, 16 Apr 2020 00:16:10: 48000000 INFO @ Thu, 16 Apr 2020 00:16:10: 43000000 INFO @ Thu, 16 Apr 2020 00:16:11: 40000000 INFO @ Thu, 16 Apr 2020 00:16:16: #1 tag size is determined as 150 bps INFO @ Thu, 16 Apr 2020 00:16:16: #1 tag size = 150 INFO @ Thu, 16 Apr 2020 00:16:16: #1 total tags in treatment: 14187661 INFO @ Thu, 16 Apr 2020 00:16:16: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 00:16:16: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 00:16:16: #1 tags after filtering in treatment: 12162316 INFO @ Thu, 16 Apr 2020 00:16:16: #1 Redundant rate of treatment: 0.14 INFO @ Thu, 16 Apr 2020 00:16:16: #1 finished! INFO @ Thu, 16 Apr 2020 00:16:16: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 00:16:16: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 00:16:17: #2 number of paired peaks: 267 WARNING @ Thu, 16 Apr 2020 00:16:17: Fewer paired peaks (267) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 267 pairs to build model! INFO @ Thu, 16 Apr 2020 00:16:17: start model_add_line... INFO @ Thu, 16 Apr 2020 00:16:17: start X-correlation... INFO @ Thu, 16 Apr 2020 00:16:17: end of X-cor INFO @ Thu, 16 Apr 2020 00:16:17: #2 finished! INFO @ Thu, 16 Apr 2020 00:16:17: #2 predicted fragment length is 213 bps INFO @ Thu, 16 Apr 2020 00:16:17: #2 alternative fragment length(s) may be 213 bps INFO @ Thu, 16 Apr 2020 00:16:17: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX6619531/SRX6619531.05_model.r WARNING @ Thu, 16 Apr 2020 00:16:17: #2 Since the d (213) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Thu, 16 Apr 2020 00:16:17: #2 You may need to consider one of the other alternative d(s): 213 WARNING @ Thu, 16 Apr 2020 00:16:17: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Thu, 16 Apr 2020 00:16:17: #3 Call peaks... INFO @ Thu, 16 Apr 2020 00:16:17: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 00:16:21: 44000000 INFO @ Thu, 16 Apr 2020 00:16:21: 41000000 INFO @ Thu, 16 Apr 2020 00:16:31: 45000000 INFO @ Thu, 16 Apr 2020 00:16:32: 42000000 INFO @ Thu, 16 Apr 2020 00:16:40: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 00:16:41: 46000000 INFO @ Thu, 16 Apr 2020 00:16:41: 43000000 INFO @ Thu, 16 Apr 2020 00:16:51: 47000000 INFO @ Thu, 16 Apr 2020 00:16:51: 44000000 INFO @ Thu, 16 Apr 2020 00:16:53: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX6619531/SRX6619531.05_peaks.xls INFO @ Thu, 16 Apr 2020 00:16:53: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX6619531/SRX6619531.05_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 00:16:53: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX6619531/SRX6619531.05_summits.bed INFO @ Thu, 16 Apr 2020 00:16:53: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (438 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Thu, 16 Apr 2020 00:17:01: 48000000 INFO @ Thu, 16 Apr 2020 00:17:01: 45000000 INFO @ Thu, 16 Apr 2020 00:17:08: #1 tag size is determined as 150 bps INFO @ Thu, 16 Apr 2020 00:17:08: #1 tag size = 150 INFO @ Thu, 16 Apr 2020 00:17:08: #1 total tags in treatment: 14187661 INFO @ Thu, 16 Apr 2020 00:17:08: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 00:17:08: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 00:17:08: #1 tags after filtering in treatment: 12162316 INFO @ Thu, 16 Apr 2020 00:17:08: #1 Redundant rate of treatment: 0.14 INFO @ Thu, 16 Apr 2020 00:17:08: #1 finished! INFO @ Thu, 16 Apr 2020 00:17:08: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 00:17:08: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 00:17:09: #2 number of paired peaks: 267 WARNING @ Thu, 16 Apr 2020 00:17:09: Fewer paired peaks (267) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 267 pairs to build model! INFO @ Thu, 16 Apr 2020 00:17:09: start model_add_line... INFO @ Thu, 16 Apr 2020 00:17:09: start X-correlation... INFO @ Thu, 16 Apr 2020 00:17:09: end of X-cor INFO @ Thu, 16 Apr 2020 00:17:09: #2 finished! INFO @ Thu, 16 Apr 2020 00:17:09: #2 predicted fragment length is 213 bps INFO @ Thu, 16 Apr 2020 00:17:09: #2 alternative fragment length(s) may be 213 bps INFO @ Thu, 16 Apr 2020 00:17:09: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX6619531/SRX6619531.10_model.r WARNING @ Thu, 16 Apr 2020 00:17:09: #2 Since the d (213) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Thu, 16 Apr 2020 00:17:09: #2 You may need to consider one of the other alternative d(s): 213 WARNING @ Thu, 16 Apr 2020 00:17:09: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Thu, 16 Apr 2020 00:17:09: #3 Call peaks... INFO @ Thu, 16 Apr 2020 00:17:09: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 00:17:11: 46000000 INFO @ Thu, 16 Apr 2020 00:17:21: 47000000 INFO @ Thu, 16 Apr 2020 00:17:31: 48000000 INFO @ Thu, 16 Apr 2020 00:17:32: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 00:17:37: #1 tag size is determined as 150 bps INFO @ Thu, 16 Apr 2020 00:17:37: #1 tag size = 150 INFO @ Thu, 16 Apr 2020 00:17:37: #1 total tags in treatment: 14187661 INFO @ Thu, 16 Apr 2020 00:17:37: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 00:17:37: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 00:17:37: #1 tags after filtering in treatment: 12162316 INFO @ Thu, 16 Apr 2020 00:17:37: #1 Redundant rate of treatment: 0.14 INFO @ Thu, 16 Apr 2020 00:17:37: #1 finished! INFO @ Thu, 16 Apr 2020 00:17:37: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 00:17:37: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 00:17:38: #2 number of paired peaks: 267 WARNING @ Thu, 16 Apr 2020 00:17:38: Fewer paired peaks (267) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 267 pairs to build model! INFO @ Thu, 16 Apr 2020 00:17:38: start model_add_line... INFO @ Thu, 16 Apr 2020 00:17:38: start X-correlation... INFO @ Thu, 16 Apr 2020 00:17:38: end of X-cor INFO @ Thu, 16 Apr 2020 00:17:38: #2 finished! INFO @ Thu, 16 Apr 2020 00:17:38: #2 predicted fragment length is 213 bps INFO @ Thu, 16 Apr 2020 00:17:38: #2 alternative fragment length(s) may be 213 bps INFO @ Thu, 16 Apr 2020 00:17:38: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX6619531/SRX6619531.20_model.r WARNING @ Thu, 16 Apr 2020 00:17:38: #2 Since the d (213) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Thu, 16 Apr 2020 00:17:38: #2 You may need to consider one of the other alternative d(s): 213 WARNING @ Thu, 16 Apr 2020 00:17:38: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Thu, 16 Apr 2020 00:17:38: #3 Call peaks... INFO @ Thu, 16 Apr 2020 00:17:38: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 00:17:45: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX6619531/SRX6619531.10_peaks.xls INFO @ Thu, 16 Apr 2020 00:17:45: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX6619531/SRX6619531.10_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 00:17:45: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX6619531/SRX6619531.10_summits.bed INFO @ Thu, 16 Apr 2020 00:17:45: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (319 records, 4 fields): 1 millis CompletedMACS2peakCalling INFO @ Thu, 16 Apr 2020 00:18:02: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 00:18:14: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX6619531/SRX6619531.20_peaks.xls INFO @ Thu, 16 Apr 2020 00:18:14: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX6619531/SRX6619531.20_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 00:18:14: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX6619531/SRX6619531.20_summits.bed INFO @ Thu, 16 Apr 2020 00:18:14: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (221 records, 4 fields): 1 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。