Job ID = 1292449 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... spots read : 18,809,593 reads read : 37,619,186 reads written : 37,619,186 spots read : 7,246,577 reads read : 14,493,154 reads written : 14,493,154 rm: cannot remove ‘fastqDump_tmp*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:27:27 26056170 reads; of these: 26056170 (100.00%) were paired; of these: 2768936 (10.63%) aligned concordantly 0 times 19861559 (76.23%) aligned concordantly exactly 1 time 3425675 (13.15%) aligned concordantly >1 times ---- 2768936 pairs aligned concordantly 0 times; of these: 1234603 (44.59%) aligned discordantly 1 time ---- 1534333 pairs aligned 0 times concordantly or discordantly; of these: 3068666 mates make up the pairs; of these: 1759980 (57.35%) aligned 0 times 776170 (25.29%) aligned exactly 1 time 532516 (17.35%) aligned >1 times 96.62% overall alignment rate Time searching: 00:27:27 Overall time: 00:27:27 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 24 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 786158 / 23879691 = 0.0329 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Sun, 02 Jun 2019 19:57:52: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX4419829/SRX4419829.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX4419829/SRX4419829.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX4419829/SRX4419829.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX4419829/SRX4419829.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 02 Jun 2019 19:57:52: #1 read tag files... INFO @ Sun, 02 Jun 2019 19:57:52: #1 read treatment tags... INFO @ Sun, 02 Jun 2019 19:57:52: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX4419829/SRX4419829.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX4419829/SRX4419829.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX4419829/SRX4419829.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX4419829/SRX4419829.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 02 Jun 2019 19:57:52: #1 read tag files... INFO @ Sun, 02 Jun 2019 19:57:52: #1 read treatment tags... INFO @ Sun, 02 Jun 2019 19:57:53: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX4419829/SRX4419829.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX4419829/SRX4419829.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX4419829/SRX4419829.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX4419829/SRX4419829.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 02 Jun 2019 19:57:53: #1 read tag files... INFO @ Sun, 02 Jun 2019 19:57:53: #1 read treatment tags... INFO @ Sun, 02 Jun 2019 19:58:00: 1000000 INFO @ Sun, 02 Jun 2019 19:58:01: 1000000 INFO @ Sun, 02 Jun 2019 19:58:03: 1000000 INFO @ Sun, 02 Jun 2019 19:58:07: 2000000 INFO @ Sun, 02 Jun 2019 19:58:10: 2000000 INFO @ Sun, 02 Jun 2019 19:58:14: 2000000 INFO @ Sun, 02 Jun 2019 19:58:15: 3000000 INFO @ Sun, 02 Jun 2019 19:58:19: 3000000 INFO @ Sun, 02 Jun 2019 19:58:23: 4000000 INFO @ Sun, 02 Jun 2019 19:58:25: 3000000 INFO @ Sun, 02 Jun 2019 19:58:29: 4000000 INFO @ Sun, 02 Jun 2019 19:58:31: 5000000 INFO @ Sun, 02 Jun 2019 19:58:35: 4000000 INFO @ Sun, 02 Jun 2019 19:58:38: 5000000 INFO @ Sun, 02 Jun 2019 19:58:39: 6000000 INFO @ Sun, 02 Jun 2019 19:58:46: 5000000 INFO @ Sun, 02 Jun 2019 19:58:46: 7000000 INFO @ Sun, 02 Jun 2019 19:58:47: 6000000 INFO @ Sun, 02 Jun 2019 19:58:53: 8000000 INFO @ Sun, 02 Jun 2019 19:58:55: 7000000 INFO @ Sun, 02 Jun 2019 19:58:56: 6000000 INFO @ Sun, 02 Jun 2019 19:59:00: 9000000 INFO @ Sun, 02 Jun 2019 19:59:04: 8000000 INFO @ Sun, 02 Jun 2019 19:59:06: 7000000 INFO @ Sun, 02 Jun 2019 19:59:08: 10000000 INFO @ Sun, 02 Jun 2019 19:59:13: 9000000 INFO @ Sun, 02 Jun 2019 19:59:15: 11000000 INFO @ Sun, 02 Jun 2019 19:59:17: 8000000 INFO @ Sun, 02 Jun 2019 19:59:21: 10000000 INFO @ Sun, 02 Jun 2019 19:59:22: 12000000 INFO @ Sun, 02 Jun 2019 19:59:27: 9000000 INFO @ Sun, 02 Jun 2019 19:59:29: 13000000 INFO @ Sun, 02 Jun 2019 19:59:30: 11000000 INFO @ Sun, 02 Jun 2019 19:59:36: 14000000 INFO @ Sun, 02 Jun 2019 19:59:37: 10000000 INFO @ Sun, 02 Jun 2019 19:59:39: 12000000 INFO @ Sun, 02 Jun 2019 19:59:44: 15000000 INFO @ Sun, 02 Jun 2019 19:59:47: 11000000 INFO @ Sun, 02 Jun 2019 19:59:47: 13000000 INFO @ Sun, 02 Jun 2019 19:59:51: 16000000 INFO @ Sun, 02 Jun 2019 19:59:56: 14000000 INFO @ Sun, 02 Jun 2019 19:59:57: 12000000 INFO @ Sun, 02 Jun 2019 19:59:58: 17000000 INFO @ Sun, 02 Jun 2019 20:00:05: 15000000 INFO @ Sun, 02 Jun 2019 20:00:05: 18000000 INFO @ Sun, 02 Jun 2019 20:00:08: 13000000 INFO @ Sun, 02 Jun 2019 20:00:13: 19000000 INFO @ Sun, 02 Jun 2019 20:00:13: 16000000 INFO @ Sun, 02 Jun 2019 20:00:18: 14000000 INFO @ Sun, 02 Jun 2019 20:00:22: 20000000 INFO @ Sun, 02 Jun 2019 20:00:23: 17000000 INFO @ Sun, 02 Jun 2019 20:00:28: 15000000 INFO @ Sun, 02 Jun 2019 20:00:30: 21000000 INFO @ Sun, 02 Jun 2019 20:00:32: 18000000 INFO @ Sun, 02 Jun 2019 20:00:38: 22000000 INFO @ Sun, 02 Jun 2019 20:00:39: 16000000 INFO @ Sun, 02 Jun 2019 20:00:41: 19000000 INFO @ Sun, 02 Jun 2019 20:00:46: 23000000 INFO @ Sun, 02 Jun 2019 20:00:49: 20000000 INFO @ Sun, 02 Jun 2019 20:00:50: 17000000 INFO @ Sun, 02 Jun 2019 20:00:53: 24000000 INFO @ Sun, 02 Jun 2019 20:00:58: 21000000 INFO @ Sun, 02 Jun 2019 20:01:00: 18000000 INFO @ Sun, 02 Jun 2019 20:01:01: 25000000 INFO @ Sun, 02 Jun 2019 20:01:07: 22000000 INFO @ Sun, 02 Jun 2019 20:01:09: 26000000 INFO @ Sun, 02 Jun 2019 20:01:11: 19000000 INFO @ Sun, 02 Jun 2019 20:01:16: 23000000 INFO @ Sun, 02 Jun 2019 20:01:17: 27000000 INFO @ Sun, 02 Jun 2019 20:01:21: 20000000 INFO @ Sun, 02 Jun 2019 20:01:24: 24000000 INFO @ Sun, 02 Jun 2019 20:01:25: 28000000 INFO @ Sun, 02 Jun 2019 20:01:32: 21000000 INFO @ Sun, 02 Jun 2019 20:01:33: 29000000 INFO @ Sun, 02 Jun 2019 20:01:33: 25000000 INFO @ Sun, 02 Jun 2019 20:01:41: 30000000 INFO @ Sun, 02 Jun 2019 20:01:42: 22000000 INFO @ Sun, 02 Jun 2019 20:01:42: 26000000 INFO @ Sun, 02 Jun 2019 20:01:48: 31000000 INFO @ Sun, 02 Jun 2019 20:01:51: 27000000 INFO @ Sun, 02 Jun 2019 20:01:52: 23000000 INFO @ Sun, 02 Jun 2019 20:01:55: 32000000 INFO @ Sun, 02 Jun 2019 20:02:00: 28000000 INFO @ Sun, 02 Jun 2019 20:02:02: 24000000 INFO @ Sun, 02 Jun 2019 20:02:03: 33000000 INFO @ Sun, 02 Jun 2019 20:02:08: 29000000 INFO @ Sun, 02 Jun 2019 20:02:10: 34000000 INFO @ Sun, 02 Jun 2019 20:02:13: 25000000 INFO @ Sun, 02 Jun 2019 20:02:17: 30000000 INFO @ Sun, 02 Jun 2019 20:02:18: 35000000 INFO @ Sun, 02 Jun 2019 20:02:24: 26000000 INFO @ Sun, 02 Jun 2019 20:02:25: 36000000 INFO @ Sun, 02 Jun 2019 20:02:26: 31000000 INFO @ Sun, 02 Jun 2019 20:02:33: 37000000 INFO @ Sun, 02 Jun 2019 20:02:34: 27000000 INFO @ Sun, 02 Jun 2019 20:02:35: 32000000 INFO @ Sun, 02 Jun 2019 20:02:40: 38000000 INFO @ Sun, 02 Jun 2019 20:02:44: 33000000 INFO @ Sun, 02 Jun 2019 20:02:44: 28000000 INFO @ Sun, 02 Jun 2019 20:02:48: 39000000 INFO @ Sun, 02 Jun 2019 20:02:52: 34000000 INFO @ Sun, 02 Jun 2019 20:02:54: 29000000 INFO @ Sun, 02 Jun 2019 20:02:55: 40000000 INFO @ Sun, 02 Jun 2019 20:03:01: 35000000 INFO @ Sun, 02 Jun 2019 20:03:03: 41000000 INFO @ Sun, 02 Jun 2019 20:03:05: 30000000 INFO @ Sun, 02 Jun 2019 20:03:10: 36000000 INFO @ Sun, 02 Jun 2019 20:03:10: 42000000 INFO @ Sun, 02 Jun 2019 20:03:15: 31000000 INFO @ Sun, 02 Jun 2019 20:03:17: 43000000 INFO @ Sun, 02 Jun 2019 20:03:19: 37000000 INFO @ Sun, 02 Jun 2019 20:03:25: 44000000 INFO @ Sun, 02 Jun 2019 20:03:25: 32000000 INFO @ Sun, 02 Jun 2019 20:03:28: 38000000 INFO @ Sun, 02 Jun 2019 20:03:32: 45000000 INFO @ Sun, 02 Jun 2019 20:03:35: 33000000 INFO @ Sun, 02 Jun 2019 20:03:37: 39000000 INFO @ Sun, 02 Jun 2019 20:03:39: 46000000 INFO @ Sun, 02 Jun 2019 20:03:45: 40000000 INFO @ Sun, 02 Jun 2019 20:03:45: 34000000 INFO @ Sun, 02 Jun 2019 20:03:46: 47000000 INFO @ Sun, 02 Jun 2019 20:03:53: 41000000 INFO @ Sun, 02 Jun 2019 20:03:54: 48000000 INFO @ Sun, 02 Jun 2019 20:03:56: 35000000 INFO @ Sun, 02 Jun 2019 20:04:00: #1 tag size is determined as 50 bps INFO @ Sun, 02 Jun 2019 20:04:00: #1 tag size = 50 INFO @ Sun, 02 Jun 2019 20:04:00: #1 total tags in treatment: 22508541 INFO @ Sun, 02 Jun 2019 20:04:00: #1 user defined the maximum tags... INFO @ Sun, 02 Jun 2019 20:04:00: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 02 Jun 2019 20:04:00: #1 tags after filtering in treatment: 18647144 INFO @ Sun, 02 Jun 2019 20:04:00: #1 Redundant rate of treatment: 0.17 INFO @ Sun, 02 Jun 2019 20:04:00: #1 finished! INFO @ Sun, 02 Jun 2019 20:04:00: #2 Build Peak Model... INFO @ Sun, 02 Jun 2019 20:04:00: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 02 Jun 2019 20:04:02: 42000000 INFO @ Sun, 02 Jun 2019 20:04:02: #2 number of paired peaks: 116 WARNING @ Sun, 02 Jun 2019 20:04:02: Fewer paired peaks (116) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 116 pairs to build model! INFO @ Sun, 02 Jun 2019 20:04:02: start model_add_line... INFO @ Sun, 02 Jun 2019 20:04:02: start X-correlation... INFO @ Sun, 02 Jun 2019 20:04:02: end of X-cor INFO @ Sun, 02 Jun 2019 20:04:02: #2 finished! INFO @ Sun, 02 Jun 2019 20:04:02: #2 predicted fragment length is 64 bps INFO @ Sun, 02 Jun 2019 20:04:02: #2 alternative fragment length(s) may be 3,64,158 bps INFO @ Sun, 02 Jun 2019 20:04:02: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX4419829/SRX4419829.10_model.r WARNING @ Sun, 02 Jun 2019 20:04:02: #2 Since the d (64) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sun, 02 Jun 2019 20:04:02: #2 You may need to consider one of the other alternative d(s): 3,64,158 WARNING @ Sun, 02 Jun 2019 20:04:02: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sun, 02 Jun 2019 20:04:02: #3 Call peaks... INFO @ Sun, 02 Jun 2019 20:04:02: #3 Pre-compute pvalue-qvalue table... INFO @ Sun, 02 Jun 2019 20:04:06: 36000000 INFO @ Sun, 02 Jun 2019 20:04:10: 43000000 INFO @ Sun, 02 Jun 2019 20:04:16: 37000000 INFO @ Sun, 02 Jun 2019 20:04:18: 44000000 INFO @ Sun, 02 Jun 2019 20:04:26: 45000000 INFO @ Sun, 02 Jun 2019 20:04:26: 38000000 INFO @ Sun, 02 Jun 2019 20:04:34: 46000000 INFO @ Sun, 02 Jun 2019 20:04:37: 39000000 INFO @ Sun, 02 Jun 2019 20:04:42: 47000000 INFO @ Sun, 02 Jun 2019 20:04:46: #3 Call peaks for each chromosome... INFO @ Sun, 02 Jun 2019 20:04:47: 40000000 INFO @ Sun, 02 Jun 2019 20:04:50: 48000000 INFO @ Sun, 02 Jun 2019 20:04:56: #1 tag size is determined as 50 bps INFO @ Sun, 02 Jun 2019 20:04:56: #1 tag size = 50 INFO @ Sun, 02 Jun 2019 20:04:56: #1 total tags in treatment: 22508541 INFO @ Sun, 02 Jun 2019 20:04:56: #1 user defined the maximum tags... INFO @ Sun, 02 Jun 2019 20:04:56: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 02 Jun 2019 20:04:57: #1 tags after filtering in treatment: 18647144 INFO @ Sun, 02 Jun 2019 20:04:57: #1 Redundant rate of treatment: 0.17 INFO @ Sun, 02 Jun 2019 20:04:57: #1 finished! INFO @ Sun, 02 Jun 2019 20:04:57: #2 Build Peak Model... INFO @ Sun, 02 Jun 2019 20:04:57: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 02 Jun 2019 20:04:57: 41000000 INFO @ Sun, 02 Jun 2019 20:04:59: #2 number of paired peaks: 116 WARNING @ Sun, 02 Jun 2019 20:04:59: Fewer paired peaks (116) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 116 pairs to build model! INFO @ Sun, 02 Jun 2019 20:04:59: start model_add_line... INFO @ Sun, 02 Jun 2019 20:04:59: start X-correlation... INFO @ Sun, 02 Jun 2019 20:04:59: end of X-cor INFO @ Sun, 02 Jun 2019 20:04:59: #2 finished! INFO @ Sun, 02 Jun 2019 20:04:59: #2 predicted fragment length is 64 bps INFO @ Sun, 02 Jun 2019 20:04:59: #2 alternative fragment length(s) may be 3,64,158 bps INFO @ Sun, 02 Jun 2019 20:04:59: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX4419829/SRX4419829.05_model.r WARNING @ Sun, 02 Jun 2019 20:04:59: #2 Since the d (64) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sun, 02 Jun 2019 20:04:59: #2 You may need to consider one of the other alternative d(s): 3,64,158 WARNING @ Sun, 02 Jun 2019 20:04:59: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sun, 02 Jun 2019 20:04:59: #3 Call peaks... INFO @ Sun, 02 Jun 2019 20:04:59: #3 Pre-compute pvalue-qvalue table... INFO @ Sun, 02 Jun 2019 20:05:07: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX4419829/SRX4419829.10_peaks.xls INFO @ Sun, 02 Jun 2019 20:05:07: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX4419829/SRX4419829.10_peaks.narrowPeak INFO @ Sun, 02 Jun 2019 20:05:07: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX4419829/SRX4419829.10_summits.bed INFO @ Sun, 02 Jun 2019 20:05:07: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (283 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Sun, 02 Jun 2019 20:05:07: 42000000 INFO @ Sun, 02 Jun 2019 20:05:18: 43000000 INFO @ Sun, 02 Jun 2019 20:05:27: 44000000 INFO @ Sun, 02 Jun 2019 20:05:37: 45000000 INFO @ Sun, 02 Jun 2019 20:05:43: #3 Call peaks for each chromosome... INFO @ Sun, 02 Jun 2019 20:05:46: 46000000 INFO @ Sun, 02 Jun 2019 20:05:54: 47000000 INFO @ Sun, 02 Jun 2019 20:06:03: 48000000 INFO @ Sun, 02 Jun 2019 20:06:04: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX4419829/SRX4419829.05_peaks.xls INFO @ Sun, 02 Jun 2019 20:06:04: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX4419829/SRX4419829.05_peaks.narrowPeak INFO @ Sun, 02 Jun 2019 20:06:04: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX4419829/SRX4419829.05_summits.bed INFO @ Sun, 02 Jun 2019 20:06:04: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (458 records, 4 fields): 3 millis CompletedMACS2peakCalling INFO @ Sun, 02 Jun 2019 20:06:11: #1 tag size is determined as 50 bps INFO @ Sun, 02 Jun 2019 20:06:11: #1 tag size = 50 INFO @ Sun, 02 Jun 2019 20:06:11: #1 total tags in treatment: 22508541 INFO @ Sun, 02 Jun 2019 20:06:11: #1 user defined the maximum tags... INFO @ Sun, 02 Jun 2019 20:06:11: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 02 Jun 2019 20:06:11: #1 tags after filtering in treatment: 18647144 INFO @ Sun, 02 Jun 2019 20:06:11: #1 Redundant rate of treatment: 0.17 INFO @ Sun, 02 Jun 2019 20:06:11: #1 finished! INFO @ Sun, 02 Jun 2019 20:06:11: #2 Build Peak Model... INFO @ Sun, 02 Jun 2019 20:06:11: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 02 Jun 2019 20:06:13: #2 number of paired peaks: 116 WARNING @ Sun, 02 Jun 2019 20:06:13: Fewer paired peaks (116) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 116 pairs to build model! INFO @ Sun, 02 Jun 2019 20:06:13: start model_add_line... INFO @ Sun, 02 Jun 2019 20:06:13: start X-correlation... INFO @ Sun, 02 Jun 2019 20:06:13: end of X-cor INFO @ Sun, 02 Jun 2019 20:06:13: #2 finished! INFO @ Sun, 02 Jun 2019 20:06:13: #2 predicted fragment length is 64 bps INFO @ Sun, 02 Jun 2019 20:06:13: #2 alternative fragment length(s) may be 3,64,158 bps INFO @ Sun, 02 Jun 2019 20:06:13: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX4419829/SRX4419829.20_model.r WARNING @ Sun, 02 Jun 2019 20:06:13: #2 Since the d (64) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sun, 02 Jun 2019 20:06:13: #2 You may need to consider one of the other alternative d(s): 3,64,158 WARNING @ Sun, 02 Jun 2019 20:06:13: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sun, 02 Jun 2019 20:06:13: #3 Call peaks... INFO @ Sun, 02 Jun 2019 20:06:13: #3 Pre-compute pvalue-qvalue table... INFO @ Sun, 02 Jun 2019 20:06:57: #3 Call peaks for each chromosome... INFO @ Sun, 02 Jun 2019 20:07:17: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX4419829/SRX4419829.20_peaks.xls INFO @ Sun, 02 Jun 2019 20:07:17: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX4419829/SRX4419829.20_peaks.narrowPeak INFO @ Sun, 02 Jun 2019 20:07:17: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX4419829/SRX4419829.20_summits.bed INFO @ Sun, 02 Jun 2019 20:07:17: Done! pass1 - making usageList (6 chroms): 0 millis pass2 - checking and writing primary data (108 records, 4 fields): 2 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。