Job ID = 10924597 sra ファイルのダウンロード中... Completed: 1582879K bytes transferred in 52 seconds (246251K bits/sec), in 1 file. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Read 40251697 spots for /home/okishinya/chipatlas/results/ce10/SRX4200544/SRR7298010.sra Written 40251697 spots for /home/okishinya/chipatlas/results/ce10/SRX4200544/SRR7298010.sra rm: cannot remove `[DSE]RX*': そのようなファイルやディレクトリはありません rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:15:33 40251697 reads; of these: 40251697 (100.00%) were unpaired; of these: 432633 (1.07%) aligned 0 times 33299493 (82.73%) aligned exactly 1 time 6519571 (16.20%) aligned >1 times 98.93% overall alignment rate Time searching: 00:15:33 Overall time: 00:15:33 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 20 files... [bam_rmdupse_core] 14048379 / 39819064 = 0.3528 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Mon, 06 Aug 2018 10:55:08: # Command line: callpeak -t SRX4200544.bam -f BAM -g ce -n SRX4200544.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX4200544.20 # format = BAM # ChIP-seq file = ['SRX4200544.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 06 Aug 2018 10:55:08: # Command line: callpeak -t SRX4200544.bam -f BAM -g ce -n SRX4200544.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX4200544.05 # format = BAM # ChIP-seq file = ['SRX4200544.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 06 Aug 2018 10:55:08: # Command line: callpeak -t SRX4200544.bam -f BAM -g ce -n SRX4200544.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX4200544.10 # format = BAM # ChIP-seq file = ['SRX4200544.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 06 Aug 2018 10:55:08: #1 read tag files... INFO @ Mon, 06 Aug 2018 10:55:08: #1 read tag files... INFO @ Mon, 06 Aug 2018 10:55:08: #1 read tag files... INFO @ Mon, 06 Aug 2018 10:55:08: #1 read treatment tags... INFO @ Mon, 06 Aug 2018 10:55:08: #1 read treatment tags... INFO @ Mon, 06 Aug 2018 10:55:08: #1 read treatment tags... INFO @ Mon, 06 Aug 2018 10:55:17: 1000000 INFO @ Mon, 06 Aug 2018 10:55:17: 1000000 INFO @ Mon, 06 Aug 2018 10:55:17: 1000000 INFO @ Mon, 06 Aug 2018 10:55:26: 2000000 INFO @ Mon, 06 Aug 2018 10:55:26: 2000000 INFO @ Mon, 06 Aug 2018 10:55:26: 2000000 INFO @ Mon, 06 Aug 2018 10:55:35: 3000000 INFO @ Mon, 06 Aug 2018 10:55:35: 3000000 INFO @ Mon, 06 Aug 2018 10:55:35: 3000000 INFO @ Mon, 06 Aug 2018 10:55:43: 4000000 INFO @ Mon, 06 Aug 2018 10:55:43: 4000000 INFO @ Mon, 06 Aug 2018 10:55:43: 4000000 INFO @ Mon, 06 Aug 2018 10:55:52: 5000000 INFO @ Mon, 06 Aug 2018 10:55:52: 5000000 INFO @ Mon, 06 Aug 2018 10:55:52: 5000000 INFO @ Mon, 06 Aug 2018 10:56:01: 6000000 INFO @ Mon, 06 Aug 2018 10:56:01: 6000000 INFO @ Mon, 06 Aug 2018 10:56:01: 6000000 INFO @ Mon, 06 Aug 2018 10:56:10: 7000000 INFO @ Mon, 06 Aug 2018 10:56:10: 7000000 INFO @ Mon, 06 Aug 2018 10:56:10: 7000000 INFO @ Mon, 06 Aug 2018 10:56:19: 8000000 INFO @ Mon, 06 Aug 2018 10:56:19: 8000000 INFO @ Mon, 06 Aug 2018 10:56:19: 8000000 INFO @ Mon, 06 Aug 2018 10:56:28: 9000000 INFO @ Mon, 06 Aug 2018 10:56:28: 9000000 INFO @ Mon, 06 Aug 2018 10:56:28: 9000000 INFO @ Mon, 06 Aug 2018 10:56:37: 10000000 INFO @ Mon, 06 Aug 2018 10:56:37: 10000000 INFO @ Mon, 06 Aug 2018 10:56:37: 10000000 INFO @ Mon, 06 Aug 2018 10:56:46: 11000000 INFO @ Mon, 06 Aug 2018 10:56:46: 11000000 INFO @ Mon, 06 Aug 2018 10:56:46: 11000000 INFO @ Mon, 06 Aug 2018 10:56:55: 12000000 INFO @ Mon, 06 Aug 2018 10:56:55: 12000000 INFO @ Mon, 06 Aug 2018 10:56:55: 12000000 INFO @ Mon, 06 Aug 2018 10:57:04: 13000000 INFO @ Mon, 06 Aug 2018 10:57:04: 13000000 INFO @ Mon, 06 Aug 2018 10:57:04: 13000000 INFO @ Mon, 06 Aug 2018 10:57:12: 14000000 INFO @ Mon, 06 Aug 2018 10:57:12: 14000000 INFO @ Mon, 06 Aug 2018 10:57:12: 14000000 INFO @ Mon, 06 Aug 2018 10:57:21: 15000000 INFO @ Mon, 06 Aug 2018 10:57:21: 15000000 INFO @ Mon, 06 Aug 2018 10:57:21: 15000000 INFO @ Mon, 06 Aug 2018 10:57:30: 16000000 INFO @ Mon, 06 Aug 2018 10:57:30: 16000000 INFO @ Mon, 06 Aug 2018 10:57:30: 16000000 INFO @ Mon, 06 Aug 2018 10:57:39: 17000000 INFO @ Mon, 06 Aug 2018 10:57:39: 17000000 INFO @ Mon, 06 Aug 2018 10:57:39: 17000000 INFO @ Mon, 06 Aug 2018 10:57:48: 18000000 INFO @ Mon, 06 Aug 2018 10:57:48: 18000000 INFO @ Mon, 06 Aug 2018 10:57:48: 18000000 INFO @ Mon, 06 Aug 2018 10:57:57: 19000000 INFO @ Mon, 06 Aug 2018 10:57:57: 19000000 INFO @ Mon, 06 Aug 2018 10:57:57: 19000000 INFO @ Mon, 06 Aug 2018 10:58:05: 20000000 INFO @ Mon, 06 Aug 2018 10:58:05: 20000000 INFO @ Mon, 06 Aug 2018 10:58:05: 20000000 INFO @ Mon, 06 Aug 2018 10:58:14: 21000000 INFO @ Mon, 06 Aug 2018 10:58:14: 21000000 INFO @ Mon, 06 Aug 2018 10:58:14: 21000000 INFO @ Mon, 06 Aug 2018 10:58:23: 22000000 INFO @ Mon, 06 Aug 2018 10:58:23: 22000000 INFO @ Mon, 06 Aug 2018 10:58:23: 22000000 INFO @ Mon, 06 Aug 2018 10:58:31: 23000000 INFO @ Mon, 06 Aug 2018 10:58:31: 23000000 INFO @ Mon, 06 Aug 2018 10:58:31: 23000000 INFO @ Mon, 06 Aug 2018 10:58:40: 24000000 INFO @ Mon, 06 Aug 2018 10:58:40: 24000000 INFO @ Mon, 06 Aug 2018 10:58:40: 24000000 INFO @ Mon, 06 Aug 2018 10:58:49: 25000000 INFO @ Mon, 06 Aug 2018 10:58:49: 25000000 INFO @ Mon, 06 Aug 2018 10:58:49: 25000000 INFO @ Mon, 06 Aug 2018 10:58:56: #1 tag size is determined as 75 bps INFO @ Mon, 06 Aug 2018 10:58:56: #1 tag size is determined as 75 bps INFO @ Mon, 06 Aug 2018 10:58:56: #1 tag size = 75 INFO @ Mon, 06 Aug 2018 10:58:56: #1 tag size = 75 INFO @ Mon, 06 Aug 2018 10:58:56: #1 total tags in treatment: 25770685 INFO @ Mon, 06 Aug 2018 10:58:56: #1 total tags in treatment: 25770685 INFO @ Mon, 06 Aug 2018 10:58:56: #1 user defined the maximum tags... INFO @ Mon, 06 Aug 2018 10:58:56: #1 user defined the maximum tags... INFO @ Mon, 06 Aug 2018 10:58:56: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 06 Aug 2018 10:58:56: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 06 Aug 2018 10:58:56: #1 tag size is determined as 75 bps INFO @ Mon, 06 Aug 2018 10:58:56: #1 tag size = 75 INFO @ Mon, 06 Aug 2018 10:58:56: #1 total tags in treatment: 25770685 INFO @ Mon, 06 Aug 2018 10:58:56: #1 user defined the maximum tags... INFO @ Mon, 06 Aug 2018 10:58:56: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 06 Aug 2018 10:58:56: #1 tags after filtering in treatment: 25770685 INFO @ Mon, 06 Aug 2018 10:58:56: #1 tags after filtering in treatment: 25770685 INFO @ Mon, 06 Aug 2018 10:58:56: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 06 Aug 2018 10:58:56: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 06 Aug 2018 10:58:56: #1 finished! INFO @ Mon, 06 Aug 2018 10:58:56: #1 finished! INFO @ Mon, 06 Aug 2018 10:58:56: #2 Build Peak Model... INFO @ Mon, 06 Aug 2018 10:58:56: #2 Build Peak Model... INFO @ Mon, 06 Aug 2018 10:58:56: #1 tags after filtering in treatment: 25770685 INFO @ Mon, 06 Aug 2018 10:58:56: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 06 Aug 2018 10:58:56: #1 finished! INFO @ Mon, 06 Aug 2018 10:58:56: #2 Build Peak Model... INFO @ Mon, 06 Aug 2018 10:58:56: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 06 Aug 2018 10:58:56: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 06 Aug 2018 10:58:56: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 06 Aug 2018 10:58:58: #2 number of paired peaks: 5 WARNING @ Mon, 06 Aug 2018 10:58:58: Too few paired peaks (5) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Mon, 06 Aug 2018 10:58:58: Process for pairing-model is terminated! INFO @ Mon, 06 Aug 2018 10:58:58: #2 number of paired peaks: 5 WARNING @ Mon, 06 Aug 2018 10:58:58: Too few paired peaks (5) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Mon, 06 Aug 2018 10:58:58: Process for pairing-model is terminated! INFO @ Mon, 06 Aug 2018 10:58:58: #2 number of paired peaks: 5 WARNING @ Mon, 06 Aug 2018 10:58:58: Too few paired peaks (5) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Mon, 06 Aug 2018 10:58:58: Process for pairing-model is terminated! cat: SRX4200544.20_peaks.narrowPeak: そのようなファイルやディレクトリはありません cat: SRX4200544.10_peaks.narrowPeak: そのようなファイルやディレクトリはありません cat: SRX4200544.05_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms)pass1 - making usageList (0 chroms): 1 millis : 1 millis pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184)needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX4200544.10_model.r'rm: cannot remove `SRX4200544.20_model.r': そのようなファイルやディレクトリはありません : そのようなファイルやディレクトリはありません needLargeMem: trying to allocate 0 bytes (limit: 17179869184)rm: cannot remove `SRX4200544.10_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX4200544.20_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX4200544.10_peaks.narrowPeak': そのようなファイルやディレクトリはありません rm: cannot remove `SRX4200544.20_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling CompletedMACS2peakCalling rm: cannot remove `SRX4200544.05_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX4200544.05_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX4200544.05_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。