Job ID = 6497387 SRX = SRX4085367 Genome = ce10 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-25T21:40:40 prefetch.2.10.7: 1) Downloading 'SRR7167396'... 2020-06-25T21:40:40 prefetch.2.10.7: Downloading via HTTPS... 2020-06-25T21:47:57 prefetch.2.10.7: HTTPS download succeed 2020-06-25T21:47:57 prefetch.2.10.7: 1) 'SRR7167396' was downloaded successfully Read 30806701 spots for SRR7167396/SRR7167396.sra Written 30806701 spots for SRR7167396/SRR7167396.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:01 Multiseed full-index search: 00:24:23 30806701 reads; of these: 30806701 (100.00%) were paired; of these: 7116885 (23.10%) aligned concordantly 0 times 20364486 (66.10%) aligned concordantly exactly 1 time 3325330 (10.79%) aligned concordantly >1 times ---- 7116885 pairs aligned concordantly 0 times; of these: 282972 (3.98%) aligned discordantly 1 time ---- 6833913 pairs aligned 0 times concordantly or discordantly; of these: 13667826 mates make up the pairs; of these: 11293795 (82.63%) aligned 0 times 2034764 (14.89%) aligned exactly 1 time 339267 (2.48%) aligned >1 times 81.67% overall alignment rate Time searching: 00:24:24 Overall time: 00:24:24 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 24 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 1612982 / 23868052 = 0.0676 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 26 Jun 2020 07:32:02: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX4085367/SRX4085367.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX4085367/SRX4085367.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX4085367/SRX4085367.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX4085367/SRX4085367.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 26 Jun 2020 07:32:02: #1 read tag files... INFO @ Fri, 26 Jun 2020 07:32:02: #1 read treatment tags... INFO @ Fri, 26 Jun 2020 07:32:11: 1000000 INFO @ Fri, 26 Jun 2020 07:32:20: 2000000 INFO @ Fri, 26 Jun 2020 07:32:28: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 26 Jun 2020 07:32:32: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX4085367/SRX4085367.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX4085367/SRX4085367.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX4085367/SRX4085367.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX4085367/SRX4085367.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 26 Jun 2020 07:32:32: #1 read tag files... INFO @ Fri, 26 Jun 2020 07:32:32: #1 read treatment tags... INFO @ Fri, 26 Jun 2020 07:32:38: 4000000 INFO @ Fri, 26 Jun 2020 07:32:41: 1000000 INFO @ Fri, 26 Jun 2020 07:32:47: 5000000 INFO @ Fri, 26 Jun 2020 07:32:49: 2000000 INFO @ Fri, 26 Jun 2020 07:32:57: 6000000 INFO @ Fri, 26 Jun 2020 07:32:57: 3000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 26 Jun 2020 07:33:03: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX4085367/SRX4085367.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX4085367/SRX4085367.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX4085367/SRX4085367.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX4085367/SRX4085367.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 26 Jun 2020 07:33:03: #1 read tag files... INFO @ Fri, 26 Jun 2020 07:33:03: #1 read treatment tags... INFO @ Fri, 26 Jun 2020 07:33:06: 4000000 INFO @ Fri, 26 Jun 2020 07:33:07: 7000000 INFO @ Fri, 26 Jun 2020 07:33:10: 1000000 INFO @ Fri, 26 Jun 2020 07:33:15: 5000000 INFO @ Fri, 26 Jun 2020 07:33:17: 8000000 INFO @ Fri, 26 Jun 2020 07:33:18: 2000000 INFO @ Fri, 26 Jun 2020 07:33:24: 6000000 INFO @ Fri, 26 Jun 2020 07:33:26: 9000000 INFO @ Fri, 26 Jun 2020 07:33:26: 3000000 INFO @ Fri, 26 Jun 2020 07:33:32: 7000000 INFO @ Fri, 26 Jun 2020 07:33:34: 4000000 INFO @ Fri, 26 Jun 2020 07:33:34: 10000000 INFO @ Fri, 26 Jun 2020 07:33:41: 8000000 INFO @ Fri, 26 Jun 2020 07:33:42: 5000000 INFO @ Fri, 26 Jun 2020 07:33:43: 11000000 INFO @ Fri, 26 Jun 2020 07:33:49: 9000000 INFO @ Fri, 26 Jun 2020 07:33:49: 6000000 INFO @ Fri, 26 Jun 2020 07:33:51: 12000000 INFO @ Fri, 26 Jun 2020 07:33:57: 10000000 INFO @ Fri, 26 Jun 2020 07:33:57: 7000000 INFO @ Fri, 26 Jun 2020 07:33:59: 13000000 INFO @ Fri, 26 Jun 2020 07:34:05: 11000000 INFO @ Fri, 26 Jun 2020 07:34:05: 8000000 INFO @ Fri, 26 Jun 2020 07:34:07: 14000000 INFO @ Fri, 26 Jun 2020 07:34:13: 12000000 INFO @ Fri, 26 Jun 2020 07:34:13: 9000000 INFO @ Fri, 26 Jun 2020 07:34:15: 15000000 INFO @ Fri, 26 Jun 2020 07:34:21: 13000000 INFO @ Fri, 26 Jun 2020 07:34:21: 10000000 INFO @ Fri, 26 Jun 2020 07:34:23: 16000000 INFO @ Fri, 26 Jun 2020 07:34:29: 14000000 INFO @ Fri, 26 Jun 2020 07:34:29: 11000000 INFO @ Fri, 26 Jun 2020 07:34:31: 17000000 INFO @ Fri, 26 Jun 2020 07:34:37: 15000000 INFO @ Fri, 26 Jun 2020 07:34:37: 12000000 INFO @ Fri, 26 Jun 2020 07:34:38: 18000000 INFO @ Fri, 26 Jun 2020 07:34:45: 16000000 INFO @ Fri, 26 Jun 2020 07:34:45: 13000000 INFO @ Fri, 26 Jun 2020 07:34:46: 19000000 INFO @ Fri, 26 Jun 2020 07:34:52: 17000000 INFO @ Fri, 26 Jun 2020 07:34:53: 14000000 INFO @ Fri, 26 Jun 2020 07:34:54: 20000000 INFO @ Fri, 26 Jun 2020 07:35:00: 18000000 INFO @ Fri, 26 Jun 2020 07:35:01: 15000000 INFO @ Fri, 26 Jun 2020 07:35:02: 21000000 INFO @ Fri, 26 Jun 2020 07:35:08: 19000000 INFO @ Fri, 26 Jun 2020 07:35:09: 16000000 INFO @ Fri, 26 Jun 2020 07:35:10: 22000000 INFO @ Fri, 26 Jun 2020 07:35:16: 20000000 INFO @ Fri, 26 Jun 2020 07:35:17: 17000000 INFO @ Fri, 26 Jun 2020 07:35:18: 23000000 INFO @ Fri, 26 Jun 2020 07:35:24: 21000000 INFO @ Fri, 26 Jun 2020 07:35:25: 18000000 INFO @ Fri, 26 Jun 2020 07:35:25: 24000000 INFO @ Fri, 26 Jun 2020 07:35:32: 22000000 INFO @ Fri, 26 Jun 2020 07:35:33: 19000000 INFO @ Fri, 26 Jun 2020 07:35:33: 25000000 INFO @ Fri, 26 Jun 2020 07:35:39: 23000000 INFO @ Fri, 26 Jun 2020 07:35:41: 20000000 INFO @ Fri, 26 Jun 2020 07:35:41: 26000000 INFO @ Fri, 26 Jun 2020 07:35:47: 24000000 INFO @ Fri, 26 Jun 2020 07:35:49: 21000000 INFO @ Fri, 26 Jun 2020 07:35:49: 27000000 INFO @ Fri, 26 Jun 2020 07:35:55: 25000000 INFO @ Fri, 26 Jun 2020 07:35:57: 22000000 INFO @ Fri, 26 Jun 2020 07:35:57: 28000000 INFO @ Fri, 26 Jun 2020 07:36:03: 26000000 INFO @ Fri, 26 Jun 2020 07:36:04: 23000000 INFO @ Fri, 26 Jun 2020 07:36:05: 29000000 INFO @ Fri, 26 Jun 2020 07:36:11: 27000000 INFO @ Fri, 26 Jun 2020 07:36:12: 24000000 INFO @ Fri, 26 Jun 2020 07:36:13: 30000000 INFO @ Fri, 26 Jun 2020 07:36:19: 28000000 INFO @ Fri, 26 Jun 2020 07:36:19: 25000000 INFO @ Fri, 26 Jun 2020 07:36:20: 31000000 INFO @ Fri, 26 Jun 2020 07:36:27: 26000000 INFO @ Fri, 26 Jun 2020 07:36:27: 29000000 INFO @ Fri, 26 Jun 2020 07:36:28: 32000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Fri, 26 Jun 2020 07:36:34: 27000000 INFO @ Fri, 26 Jun 2020 07:36:35: 30000000 INFO @ Fri, 26 Jun 2020 07:36:36: 33000000 INFO @ Fri, 26 Jun 2020 07:36:41: 28000000 INFO @ Fri, 26 Jun 2020 07:36:43: 31000000 INFO @ Fri, 26 Jun 2020 07:36:44: 34000000 INFO @ Fri, 26 Jun 2020 07:36:49: 29000000 INFO @ Fri, 26 Jun 2020 07:36:51: 32000000 INFO @ Fri, 26 Jun 2020 07:36:52: 35000000 INFO @ Fri, 26 Jun 2020 07:36:56: 30000000 INFO @ Fri, 26 Jun 2020 07:36:58: 33000000 INFO @ Fri, 26 Jun 2020 07:37:00: 36000000 INFO @ Fri, 26 Jun 2020 07:37:03: 31000000 INFO @ Fri, 26 Jun 2020 07:37:06: 34000000 INFO @ Fri, 26 Jun 2020 07:37:08: 37000000 INFO @ Fri, 26 Jun 2020 07:37:11: 32000000 INFO @ Fri, 26 Jun 2020 07:37:14: 35000000 INFO @ Fri, 26 Jun 2020 07:37:16: 38000000 INFO @ Fri, 26 Jun 2020 07:37:18: 33000000 INFO @ Fri, 26 Jun 2020 07:37:22: 36000000 INFO @ Fri, 26 Jun 2020 07:37:24: 39000000 INFO @ Fri, 26 Jun 2020 07:37:25: 34000000 INFO @ Fri, 26 Jun 2020 07:37:30: 37000000 INFO @ Fri, 26 Jun 2020 07:37:31: 40000000 INFO @ Fri, 26 Jun 2020 07:37:33: 35000000 INFO @ Fri, 26 Jun 2020 07:37:38: 38000000 INFO @ Fri, 26 Jun 2020 07:37:39: 41000000 INFO @ Fri, 26 Jun 2020 07:37:40: 36000000 INFO @ Fri, 26 Jun 2020 07:37:45: 39000000 BigWig に変換しました。 INFO @ Fri, 26 Jun 2020 07:37:47: 42000000 INFO @ Fri, 26 Jun 2020 07:37:47: 37000000 INFO @ Fri, 26 Jun 2020 07:37:53: 40000000 INFO @ Fri, 26 Jun 2020 07:37:55: 38000000 INFO @ Fri, 26 Jun 2020 07:37:56: 43000000 INFO @ Fri, 26 Jun 2020 07:38:01: 41000000 INFO @ Fri, 26 Jun 2020 07:38:02: 39000000 INFO @ Fri, 26 Jun 2020 07:38:04: 44000000 INFO @ Fri, 26 Jun 2020 07:38:09: 42000000 INFO @ Fri, 26 Jun 2020 07:38:09: 40000000 INFO @ Fri, 26 Jun 2020 07:38:12: 45000000 INFO @ Fri, 26 Jun 2020 07:38:16: 41000000 INFO @ Fri, 26 Jun 2020 07:38:17: 43000000 INFO @ Fri, 26 Jun 2020 07:38:21: 46000000 INFO @ Fri, 26 Jun 2020 07:38:24: 42000000 INFO @ Fri, 26 Jun 2020 07:38:25: 44000000 INFO @ Fri, 26 Jun 2020 07:38:28: 47000000 INFO @ Fri, 26 Jun 2020 07:38:29: #1 tag size is determined as 51 bps INFO @ Fri, 26 Jun 2020 07:38:29: #1 tag size = 51 INFO @ Fri, 26 Jun 2020 07:38:29: #1 total tags in treatment: 22086903 INFO @ Fri, 26 Jun 2020 07:38:29: #1 user defined the maximum tags... INFO @ Fri, 26 Jun 2020 07:38:29: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 26 Jun 2020 07:38:30: #1 tags after filtering in treatment: 19307729 INFO @ Fri, 26 Jun 2020 07:38:30: #1 Redundant rate of treatment: 0.13 INFO @ Fri, 26 Jun 2020 07:38:30: #1 finished! INFO @ Fri, 26 Jun 2020 07:38:30: #2 Build Peak Model... INFO @ Fri, 26 Jun 2020 07:38:30: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 26 Jun 2020 07:38:31: 43000000 INFO @ Fri, 26 Jun 2020 07:38:31: #2 number of paired peaks: 193 WARNING @ Fri, 26 Jun 2020 07:38:31: Fewer paired peaks (193) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 193 pairs to build model! INFO @ Fri, 26 Jun 2020 07:38:31: start model_add_line... INFO @ Fri, 26 Jun 2020 07:38:31: start X-correlation... INFO @ Fri, 26 Jun 2020 07:38:31: end of X-cor INFO @ Fri, 26 Jun 2020 07:38:31: #2 finished! INFO @ Fri, 26 Jun 2020 07:38:31: #2 predicted fragment length is 64 bps INFO @ Fri, 26 Jun 2020 07:38:31: #2 alternative fragment length(s) may be 2,64,99,111 bps INFO @ Fri, 26 Jun 2020 07:38:31: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX4085367/SRX4085367.05_model.r WARNING @ Fri, 26 Jun 2020 07:38:31: #2 Since the d (64) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 26 Jun 2020 07:38:31: #2 You may need to consider one of the other alternative d(s): 2,64,99,111 WARNING @ Fri, 26 Jun 2020 07:38:31: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 26 Jun 2020 07:38:31: #3 Call peaks... INFO @ Fri, 26 Jun 2020 07:38:31: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 26 Jun 2020 07:38:33: 45000000 INFO @ Fri, 26 Jun 2020 07:38:38: 44000000 INFO @ Fri, 26 Jun 2020 07:38:40: 46000000 INFO @ Fri, 26 Jun 2020 07:38:45: 45000000 INFO @ Fri, 26 Jun 2020 07:38:48: 47000000 INFO @ Fri, 26 Jun 2020 07:38:49: #1 tag size is determined as 51 bps INFO @ Fri, 26 Jun 2020 07:38:49: #1 tag size = 51 INFO @ Fri, 26 Jun 2020 07:38:49: #1 total tags in treatment: 22086903 INFO @ Fri, 26 Jun 2020 07:38:49: #1 user defined the maximum tags... INFO @ Fri, 26 Jun 2020 07:38:49: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 26 Jun 2020 07:38:49: #1 tags after filtering in treatment: 19307729 INFO @ Fri, 26 Jun 2020 07:38:49: #1 Redundant rate of treatment: 0.13 INFO @ Fri, 26 Jun 2020 07:38:49: #1 finished! INFO @ Fri, 26 Jun 2020 07:38:49: #2 Build Peak Model... INFO @ Fri, 26 Jun 2020 07:38:49: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 26 Jun 2020 07:38:50: #2 number of paired peaks: 193 WARNING @ Fri, 26 Jun 2020 07:38:50: Fewer paired peaks (193) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 193 pairs to build model! INFO @ Fri, 26 Jun 2020 07:38:50: start model_add_line... INFO @ Fri, 26 Jun 2020 07:38:51: start X-correlation... INFO @ Fri, 26 Jun 2020 07:38:51: end of X-cor INFO @ Fri, 26 Jun 2020 07:38:51: #2 finished! INFO @ Fri, 26 Jun 2020 07:38:51: #2 predicted fragment length is 64 bps INFO @ Fri, 26 Jun 2020 07:38:51: #2 alternative fragment length(s) may be 2,64,99,111 bps INFO @ Fri, 26 Jun 2020 07:38:51: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX4085367/SRX4085367.10_model.r WARNING @ Fri, 26 Jun 2020 07:38:51: #2 Since the d (64) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 26 Jun 2020 07:38:51: #2 You may need to consider one of the other alternative d(s): 2,64,99,111 WARNING @ Fri, 26 Jun 2020 07:38:51: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 26 Jun 2020 07:38:51: #3 Call peaks... INFO @ Fri, 26 Jun 2020 07:38:51: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 26 Jun 2020 07:38:52: 46000000 INFO @ Fri, 26 Jun 2020 07:38:58: 47000000 INFO @ Fri, 26 Jun 2020 07:38:59: #1 tag size is determined as 51 bps INFO @ Fri, 26 Jun 2020 07:38:59: #1 tag size = 51 INFO @ Fri, 26 Jun 2020 07:38:59: #1 total tags in treatment: 22086903 INFO @ Fri, 26 Jun 2020 07:38:59: #1 user defined the maximum tags... INFO @ Fri, 26 Jun 2020 07:38:59: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 26 Jun 2020 07:38:59: #1 tags after filtering in treatment: 19307729 INFO @ Fri, 26 Jun 2020 07:38:59: #1 Redundant rate of treatment: 0.13 INFO @ Fri, 26 Jun 2020 07:38:59: #1 finished! INFO @ Fri, 26 Jun 2020 07:38:59: #2 Build Peak Model... INFO @ Fri, 26 Jun 2020 07:38:59: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 26 Jun 2020 07:39:01: #2 number of paired peaks: 193 WARNING @ Fri, 26 Jun 2020 07:39:01: Fewer paired peaks (193) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 193 pairs to build model! INFO @ Fri, 26 Jun 2020 07:39:01: start model_add_line... INFO @ Fri, 26 Jun 2020 07:39:01: start X-correlation... INFO @ Fri, 26 Jun 2020 07:39:01: end of X-cor INFO @ Fri, 26 Jun 2020 07:39:01: #2 finished! INFO @ Fri, 26 Jun 2020 07:39:01: #2 predicted fragment length is 64 bps INFO @ Fri, 26 Jun 2020 07:39:01: #2 alternative fragment length(s) may be 2,64,99,111 bps INFO @ Fri, 26 Jun 2020 07:39:01: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX4085367/SRX4085367.20_model.r WARNING @ Fri, 26 Jun 2020 07:39:01: #2 Since the d (64) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 26 Jun 2020 07:39:01: #2 You may need to consider one of the other alternative d(s): 2,64,99,111 WARNING @ Fri, 26 Jun 2020 07:39:01: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 26 Jun 2020 07:39:01: #3 Call peaks... INFO @ Fri, 26 Jun 2020 07:39:01: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 26 Jun 2020 07:39:09: #3 Call peaks for each chromosome... INFO @ Fri, 26 Jun 2020 07:39:27: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX4085367/SRX4085367.05_peaks.xls INFO @ Fri, 26 Jun 2020 07:39:27: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX4085367/SRX4085367.05_peaks.narrowPeak INFO @ Fri, 26 Jun 2020 07:39:27: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX4085367/SRX4085367.05_summits.bed INFO @ Fri, 26 Jun 2020 07:39:27: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (2060 records, 4 fields): 4 millis CompletedMACS2peakCalling INFO @ Fri, 26 Jun 2020 07:39:29: #3 Call peaks for each chromosome... INFO @ Fri, 26 Jun 2020 07:39:39: #3 Call peaks for each chromosome... INFO @ Fri, 26 Jun 2020 07:39:47: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX4085367/SRX4085367.10_peaks.xls INFO @ Fri, 26 Jun 2020 07:39:47: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX4085367/SRX4085367.10_peaks.narrowPeak INFO @ Fri, 26 Jun 2020 07:39:47: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX4085367/SRX4085367.10_summits.bed INFO @ Fri, 26 Jun 2020 07:39:47: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (1101 records, 4 fields): 3 millis CompletedMACS2peakCalling INFO @ Fri, 26 Jun 2020 07:39:57: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX4085367/SRX4085367.20_peaks.xls INFO @ Fri, 26 Jun 2020 07:39:57: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX4085367/SRX4085367.20_peaks.narrowPeak INFO @ Fri, 26 Jun 2020 07:39:57: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX4085367/SRX4085367.20_summits.bed INFO @ Fri, 26 Jun 2020 07:39:57: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (389 records, 4 fields): 2 millis CompletedMACS2peakCalling