Job ID = 10714424 sra ファイルのダウンロード中... Completed: 2495741K bytes transferred in 56 seconds (363163K bits/sec), in 1 file. sra ファイルのダウンロードが完了しました。 Read layout: PAIRED fastq に変換中... Read 34958879 spots for /home/okishinya/chipatlas/results/ce10/SRX4085340/SRR7167369.sra Written 34958879 spots for /home/okishinya/chipatlas/results/ce10/SRX4085340/SRR7167369.sra rm: cannot remove `[DSE]RX*': そのようなファイルやディレクトリはありません rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:35:50 34958879 reads; of these: 34958879 (100.00%) were paired; of these: 2792744 (7.99%) aligned concordantly 0 times 28233588 (80.76%) aligned concordantly exactly 1 time 3932547 (11.25%) aligned concordantly >1 times ---- 2792744 pairs aligned concordantly 0 times; of these: 274580 (9.83%) aligned discordantly 1 time ---- 2518164 pairs aligned 0 times concordantly or discordantly; of these: 5036328 mates make up the pairs; of these: 3762157 (74.70%) aligned 0 times 1029813 (20.45%) aligned exactly 1 time 244358 (4.85%) aligned >1 times 94.62% overall alignment rate Time searching: 00:35:50 Overall time: 00:35:50 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 28 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 7842101 / 32388692 = 0.2421 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Sun, 03 Jun 2018 13:27:34: # Command line: callpeak -t SRX4085340.bam -f BAM -g ce -n SRX4085340.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX4085340.10 # format = BAM # ChIP-seq file = ['SRX4085340.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 03 Jun 2018 13:27:34: #1 read tag files... INFO @ Sun, 03 Jun 2018 13:27:34: #1 read treatment tags... INFO @ Sun, 03 Jun 2018 13:27:34: # Command line: callpeak -t SRX4085340.bam -f BAM -g ce -n SRX4085340.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX4085340.05 # format = BAM # ChIP-seq file = ['SRX4085340.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 03 Jun 2018 13:27:34: #1 read tag files... INFO @ Sun, 03 Jun 2018 13:27:34: #1 read treatment tags... INFO @ Sun, 03 Jun 2018 13:27:34: # Command line: callpeak -t SRX4085340.bam -f BAM -g ce -n SRX4085340.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX4085340.20 # format = BAM # ChIP-seq file = ['SRX4085340.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 03 Jun 2018 13:27:34: #1 read tag files... INFO @ Sun, 03 Jun 2018 13:27:34: #1 read treatment tags... INFO @ Sun, 03 Jun 2018 13:27:41: 1000000 INFO @ Sun, 03 Jun 2018 13:27:41: 1000000 INFO @ Sun, 03 Jun 2018 13:27:41: 1000000 INFO @ Sun, 03 Jun 2018 13:27:48: 2000000 INFO @ Sun, 03 Jun 2018 13:27:48: 2000000 INFO @ Sun, 03 Jun 2018 13:27:48: 2000000 INFO @ Sun, 03 Jun 2018 13:27:55: 3000000 INFO @ Sun, 03 Jun 2018 13:27:55: 3000000 INFO @ Sun, 03 Jun 2018 13:27:55: 3000000 INFO @ Sun, 03 Jun 2018 13:28:01: 4000000 INFO @ Sun, 03 Jun 2018 13:28:01: 4000000 INFO @ Sun, 03 Jun 2018 13:28:02: 4000000 INFO @ Sun, 03 Jun 2018 13:28:08: 5000000 INFO @ Sun, 03 Jun 2018 13:28:08: 5000000 INFO @ Sun, 03 Jun 2018 13:28:09: 5000000 INFO @ Sun, 03 Jun 2018 13:28:14: 6000000 INFO @ Sun, 03 Jun 2018 13:28:15: 6000000 INFO @ Sun, 03 Jun 2018 13:28:16: 6000000 INFO @ Sun, 03 Jun 2018 13:28:21: 7000000 INFO @ Sun, 03 Jun 2018 13:28:22: 7000000 INFO @ Sun, 03 Jun 2018 13:28:24: 7000000 INFO @ Sun, 03 Jun 2018 13:28:28: 8000000 INFO @ Sun, 03 Jun 2018 13:28:28: 8000000 INFO @ Sun, 03 Jun 2018 13:28:31: 8000000 INFO @ Sun, 03 Jun 2018 13:28:35: 9000000 INFO @ Sun, 03 Jun 2018 13:28:35: 9000000 INFO @ Sun, 03 Jun 2018 13:28:38: 9000000 INFO @ Sun, 03 Jun 2018 13:28:42: 10000000 INFO @ Sun, 03 Jun 2018 13:28:42: 10000000 INFO @ Sun, 03 Jun 2018 13:28:45: 10000000 INFO @ Sun, 03 Jun 2018 13:28:49: 11000000 INFO @ Sun, 03 Jun 2018 13:28:49: 11000000 INFO @ Sun, 03 Jun 2018 13:28:52: 11000000 INFO @ Sun, 03 Jun 2018 13:28:55: 12000000 INFO @ Sun, 03 Jun 2018 13:28:55: 12000000 INFO @ Sun, 03 Jun 2018 13:28:59: 12000000 INFO @ Sun, 03 Jun 2018 13:29:02: 13000000 INFO @ Sun, 03 Jun 2018 13:29:02: 13000000 INFO @ Sun, 03 Jun 2018 13:29:06: 13000000 INFO @ Sun, 03 Jun 2018 13:29:08: 14000000 INFO @ Sun, 03 Jun 2018 13:29:09: 14000000 INFO @ Sun, 03 Jun 2018 13:29:13: 14000000 INFO @ Sun, 03 Jun 2018 13:29:16: 15000000 INFO @ Sun, 03 Jun 2018 13:29:16: 15000000 INFO @ Sun, 03 Jun 2018 13:29:21: 15000000 INFO @ Sun, 03 Jun 2018 13:29:23: 16000000 INFO @ Sun, 03 Jun 2018 13:29:24: 16000000 INFO @ Sun, 03 Jun 2018 13:29:28: 16000000 INFO @ Sun, 03 Jun 2018 13:29:30: 17000000 INFO @ Sun, 03 Jun 2018 13:29:31: 17000000 INFO @ Sun, 03 Jun 2018 13:29:36: 17000000 INFO @ Sun, 03 Jun 2018 13:29:37: 18000000 INFO @ Sun, 03 Jun 2018 13:29:38: 18000000 INFO @ Sun, 03 Jun 2018 13:29:43: 18000000 INFO @ Sun, 03 Jun 2018 13:29:44: 19000000 INFO @ Sun, 03 Jun 2018 13:29:46: 19000000 INFO @ Sun, 03 Jun 2018 13:29:51: 19000000 INFO @ Sun, 03 Jun 2018 13:29:52: 20000000 INFO @ Sun, 03 Jun 2018 13:29:53: 20000000 INFO @ Sun, 03 Jun 2018 13:29:59: 20000000 INFO @ Sun, 03 Jun 2018 13:30:00: 21000000 INFO @ Sun, 03 Jun 2018 13:30:01: 21000000 INFO @ Sun, 03 Jun 2018 13:30:07: 21000000 INFO @ Sun, 03 Jun 2018 13:30:08: 22000000 INFO @ Sun, 03 Jun 2018 13:30:09: 22000000 INFO @ Sun, 03 Jun 2018 13:30:15: 22000000 INFO @ Sun, 03 Jun 2018 13:30:16: 23000000 INFO @ Sun, 03 Jun 2018 13:30:17: 23000000 INFO @ Sun, 03 Jun 2018 13:30:23: 23000000 INFO @ Sun, 03 Jun 2018 13:30:23: 24000000 INFO @ Sun, 03 Jun 2018 13:30:25: 24000000 INFO @ Sun, 03 Jun 2018 13:30:31: 24000000 INFO @ Sun, 03 Jun 2018 13:30:31: 25000000 INFO @ Sun, 03 Jun 2018 13:30:33: 25000000 INFO @ Sun, 03 Jun 2018 13:30:39: 25000000 INFO @ Sun, 03 Jun 2018 13:30:39: 26000000 INFO @ Sun, 03 Jun 2018 13:30:40: 26000000 INFO @ Sun, 03 Jun 2018 13:30:47: 27000000 INFO @ Sun, 03 Jun 2018 13:30:47: 26000000 INFO @ Sun, 03 Jun 2018 13:30:48: 27000000 INFO @ Sun, 03 Jun 2018 13:30:54: 28000000 INFO @ Sun, 03 Jun 2018 13:30:54: 27000000 INFO @ Sun, 03 Jun 2018 13:30:55: 28000000 INFO @ Sun, 03 Jun 2018 13:31:01: 29000000 INFO @ Sun, 03 Jun 2018 13:31:02: 28000000 INFO @ Sun, 03 Jun 2018 13:31:02: 29000000 INFO @ Sun, 03 Jun 2018 13:31:08: 30000000 INFO @ Sun, 03 Jun 2018 13:31:09: 30000000 INFO @ Sun, 03 Jun 2018 13:31:09: 29000000 INFO @ Sun, 03 Jun 2018 13:31:15: 31000000 INFO @ Sun, 03 Jun 2018 13:31:16: 31000000 INFO @ Sun, 03 Jun 2018 13:31:16: 30000000 INFO @ Sun, 03 Jun 2018 13:31:22: 32000000 INFO @ Sun, 03 Jun 2018 13:31:22: 32000000 INFO @ Sun, 03 Jun 2018 13:31:24: 31000000 INFO @ Sun, 03 Jun 2018 13:31:29: 33000000 INFO @ Sun, 03 Jun 2018 13:31:29: 33000000 INFO @ Sun, 03 Jun 2018 13:31:31: 32000000 INFO @ Sun, 03 Jun 2018 13:31:36: 34000000 INFO @ Sun, 03 Jun 2018 13:31:36: 34000000 INFO @ Sun, 03 Jun 2018 13:31:39: 33000000 INFO @ Sun, 03 Jun 2018 13:31:43: 35000000 INFO @ Sun, 03 Jun 2018 13:31:44: 35000000 INFO @ Sun, 03 Jun 2018 13:31:46: 34000000 INFO @ Sun, 03 Jun 2018 13:31:50: 36000000 INFO @ Sun, 03 Jun 2018 13:31:51: 36000000 INFO @ Sun, 03 Jun 2018 13:31:53: 35000000 INFO @ Sun, 03 Jun 2018 13:31:57: 37000000 INFO @ Sun, 03 Jun 2018 13:31:58: 37000000 INFO @ Sun, 03 Jun 2018 13:32:01: 36000000 INFO @ Sun, 03 Jun 2018 13:32:04: 38000000 INFO @ Sun, 03 Jun 2018 13:32:05: 38000000 INFO @ Sun, 03 Jun 2018 13:32:08: 37000000 INFO @ Sun, 03 Jun 2018 13:32:12: 39000000 INFO @ Sun, 03 Jun 2018 13:32:13: 39000000 INFO @ Sun, 03 Jun 2018 13:32:16: 38000000 INFO @ Sun, 03 Jun 2018 13:32:20: 40000000 INFO @ Sun, 03 Jun 2018 13:32:21: 40000000 INFO @ Sun, 03 Jun 2018 13:32:24: 39000000 INFO @ Sun, 03 Jun 2018 13:32:28: 41000000 INFO @ Sun, 03 Jun 2018 13:32:29: 41000000 INFO @ Sun, 03 Jun 2018 13:32:33: 40000000 INFO @ Sun, 03 Jun 2018 13:32:36: 42000000 INFO @ Sun, 03 Jun 2018 13:32:37: 42000000 INFO @ Sun, 03 Jun 2018 13:32:41: 41000000 INFO @ Sun, 03 Jun 2018 13:32:44: 43000000 INFO @ Sun, 03 Jun 2018 13:32:45: 43000000 INFO @ Sun, 03 Jun 2018 13:32:49: 42000000 INFO @ Sun, 03 Jun 2018 13:32:52: 44000000 INFO @ Sun, 03 Jun 2018 13:32:53: 44000000 INFO @ Sun, 03 Jun 2018 13:32:57: 43000000 INFO @ Sun, 03 Jun 2018 13:33:00: 45000000 INFO @ Sun, 03 Jun 2018 13:33:01: 45000000 INFO @ Sun, 03 Jun 2018 13:33:05: 44000000 INFO @ Sun, 03 Jun 2018 13:33:08: 46000000 INFO @ Sun, 03 Jun 2018 13:33:09: 46000000 INFO @ Sun, 03 Jun 2018 13:33:13: 45000000 INFO @ Sun, 03 Jun 2018 13:33:16: 47000000 INFO @ Sun, 03 Jun 2018 13:33:17: 47000000 INFO @ Sun, 03 Jun 2018 13:33:21: 46000000 INFO @ Sun, 03 Jun 2018 13:33:24: 48000000 INFO @ Sun, 03 Jun 2018 13:33:25: 48000000 INFO @ Sun, 03 Jun 2018 13:33:29: 47000000 INFO @ Sun, 03 Jun 2018 13:33:32: 49000000 INFO @ Sun, 03 Jun 2018 13:33:33: 49000000 INFO @ Sun, 03 Jun 2018 13:33:38: 48000000 INFO @ Sun, 03 Jun 2018 13:33:40: 50000000 INFO @ Sun, 03 Jun 2018 13:33:40: 50000000 INFO @ Sun, 03 Jun 2018 13:33:43: #1 tag size is determined as 51 bps INFO @ Sun, 03 Jun 2018 13:33:43: #1 tag size = 51 INFO @ Sun, 03 Jun 2018 13:33:43: #1 total tags in treatment: 24359517 INFO @ Sun, 03 Jun 2018 13:33:43: #1 user defined the maximum tags... INFO @ Sun, 03 Jun 2018 13:33:43: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 03 Jun 2018 13:33:44: #1 tag size is determined as 51 bps INFO @ Sun, 03 Jun 2018 13:33:44: #1 tag size = 51 INFO @ Sun, 03 Jun 2018 13:33:44: #1 total tags in treatment: 24359517 INFO @ Sun, 03 Jun 2018 13:33:44: #1 user defined the maximum tags... INFO @ Sun, 03 Jun 2018 13:33:44: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 03 Jun 2018 13:33:44: #1 tags after filtering in treatment: 20713905 INFO @ Sun, 03 Jun 2018 13:33:44: #1 Redundant rate of treatment: 0.15 INFO @ Sun, 03 Jun 2018 13:33:44: #1 finished! INFO @ Sun, 03 Jun 2018 13:33:44: #2 Build Peak Model... INFO @ Sun, 03 Jun 2018 13:33:44: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 03 Jun 2018 13:33:44: #1 tags after filtering in treatment: 20713905 INFO @ Sun, 03 Jun 2018 13:33:44: #1 Redundant rate of treatment: 0.15 INFO @ Sun, 03 Jun 2018 13:33:44: #1 finished! INFO @ Sun, 03 Jun 2018 13:33:44: #2 Build Peak Model... INFO @ Sun, 03 Jun 2018 13:33:44: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 03 Jun 2018 13:33:45: 49000000 INFO @ Sun, 03 Jun 2018 13:33:45: #2 number of paired peaks: 130 WARNING @ Sun, 03 Jun 2018 13:33:45: Fewer paired peaks (130) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 130 pairs to build model! INFO @ Sun, 03 Jun 2018 13:33:45: start model_add_line... INFO @ Sun, 03 Jun 2018 13:33:45: start X-correlation... INFO @ Sun, 03 Jun 2018 13:33:45: end of X-cor INFO @ Sun, 03 Jun 2018 13:33:45: #2 finished! INFO @ Sun, 03 Jun 2018 13:33:45: #2 predicted fragment length is 66 bps INFO @ Sun, 03 Jun 2018 13:33:45: #2 alternative fragment length(s) may be 2,66 bps INFO @ Sun, 03 Jun 2018 13:33:45: #2.2 Generate R script for model : SRX4085340.10_model.r WARNING @ Sun, 03 Jun 2018 13:33:45: #2 Since the d (66) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sun, 03 Jun 2018 13:33:45: #2 You may need to consider one of the other alternative d(s): 2,66 WARNING @ Sun, 03 Jun 2018 13:33:45: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sun, 03 Jun 2018 13:33:45: #3 Call peaks... INFO @ Sun, 03 Jun 2018 13:33:45: #3 Pre-compute pvalue-qvalue table... INFO @ Sun, 03 Jun 2018 13:33:46: #2 number of paired peaks: 130 WARNING @ Sun, 03 Jun 2018 13:33:46: Fewer paired peaks (130) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 130 pairs to build model! INFO @ Sun, 03 Jun 2018 13:33:46: start model_add_line... INFO @ Sun, 03 Jun 2018 13:33:46: start X-correlation... INFO @ Sun, 03 Jun 2018 13:33:46: end of X-cor INFO @ Sun, 03 Jun 2018 13:33:46: #2 finished! INFO @ Sun, 03 Jun 2018 13:33:46: #2 predicted fragment length is 66 bps INFO @ Sun, 03 Jun 2018 13:33:46: #2 alternative fragment length(s) may be 2,66 bps INFO @ Sun, 03 Jun 2018 13:33:46: #2.2 Generate R script for model : SRX4085340.20_model.r WARNING @ Sun, 03 Jun 2018 13:33:46: #2 Since the d (66) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sun, 03 Jun 2018 13:33:46: #2 You may need to consider one of the other alternative d(s): 2,66 WARNING @ Sun, 03 Jun 2018 13:33:46: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sun, 03 Jun 2018 13:33:46: #3 Call peaks... INFO @ Sun, 03 Jun 2018 13:33:46: #3 Pre-compute pvalue-qvalue table... INFO @ Sun, 03 Jun 2018 13:33:52: 50000000 INFO @ Sun, 03 Jun 2018 13:33:55: #1 tag size is determined as 51 bps INFO @ Sun, 03 Jun 2018 13:33:55: #1 tag size = 51 INFO @ Sun, 03 Jun 2018 13:33:55: #1 total tags in treatment: 24359517 INFO @ Sun, 03 Jun 2018 13:33:55: #1 user defined the maximum tags... INFO @ Sun, 03 Jun 2018 13:33:55: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 03 Jun 2018 13:33:55: #1 tags after filtering in treatment: 20713905 INFO @ Sun, 03 Jun 2018 13:33:55: #1 Redundant rate of treatment: 0.15 INFO @ Sun, 03 Jun 2018 13:33:55: #1 finished! INFO @ Sun, 03 Jun 2018 13:33:55: #2 Build Peak Model... INFO @ Sun, 03 Jun 2018 13:33:55: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 03 Jun 2018 13:33:57: #2 number of paired peaks: 130 WARNING @ Sun, 03 Jun 2018 13:33:57: Fewer paired peaks (130) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 130 pairs to build model! INFO @ Sun, 03 Jun 2018 13:33:57: start model_add_line... INFO @ Sun, 03 Jun 2018 13:33:57: start X-correlation... INFO @ Sun, 03 Jun 2018 13:33:57: end of X-cor INFO @ Sun, 03 Jun 2018 13:33:57: #2 finished! INFO @ Sun, 03 Jun 2018 13:33:57: #2 predicted fragment length is 66 bps INFO @ Sun, 03 Jun 2018 13:33:57: #2 alternative fragment length(s) may be 2,66 bps INFO @ Sun, 03 Jun 2018 13:33:57: #2.2 Generate R script for model : SRX4085340.05_model.r WARNING @ Sun, 03 Jun 2018 13:33:57: #2 Since the d (66) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sun, 03 Jun 2018 13:33:57: #2 You may need to consider one of the other alternative d(s): 2,66 WARNING @ Sun, 03 Jun 2018 13:33:57: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sun, 03 Jun 2018 13:33:57: #3 Call peaks... INFO @ Sun, 03 Jun 2018 13:33:57: #3 Pre-compute pvalue-qvalue table... INFO @ Sun, 03 Jun 2018 13:34:22: #3 Call peaks for each chromosome... INFO @ Sun, 03 Jun 2018 13:34:24: #3 Call peaks for each chromosome... INFO @ Sun, 03 Jun 2018 13:34:37: #3 Call peaks for each chromosome... INFO @ Sun, 03 Jun 2018 13:34:42: #4 Write output xls file... SRX4085340.20_peaks.xls INFO @ Sun, 03 Jun 2018 13:34:42: #4 Write peak in narrowPeak format file... SRX4085340.20_peaks.narrowPeak INFO @ Sun, 03 Jun 2018 13:34:42: #4 Write summits bed file... SRX4085340.20_summits.bed INFO @ Sun, 03 Jun 2018 13:34:42: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (167 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Sun, 03 Jun 2018 13:34:43: #4 Write output xls file... SRX4085340.10_peaks.xls INFO @ Sun, 03 Jun 2018 13:34:43: #4 Write peak in narrowPeak format file... SRX4085340.10_peaks.narrowPeak INFO @ Sun, 03 Jun 2018 13:34:43: #4 Write summits bed file... SRX4085340.10_summits.bed INFO @ Sun, 03 Jun 2018 13:34:43: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (483 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Sun, 03 Jun 2018 13:34:57: #4 Write output xls file... SRX4085340.05_peaks.xls INFO @ Sun, 03 Jun 2018 13:34:57: #4 Write peak in narrowPeak format file... SRX4085340.05_peaks.narrowPeak INFO @ Sun, 03 Jun 2018 13:34:57: #4 Write summits bed file... SRX4085340.05_summits.bed INFO @ Sun, 03 Jun 2018 13:34:57: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (879 records, 4 fields): 2 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。