Job ID = 12264787 SRX = SRX4082393 Genome = ce10 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 79358678 spots for SRR7164220/SRR7164220.sra Written 79358678 spots for SRR7164220/SRR7164220.sra fastq に変換しました。 bowtie でマッピング中... Your job 12265695 ("srTce11") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:17:47 79358678 reads; of these: 79358678 (100.00%) were paired; of these: 5721198 (7.21%) aligned concordantly 0 times 64444290 (81.21%) aligned concordantly exactly 1 time 9193190 (11.58%) aligned concordantly >1 times ---- 5721198 pairs aligned concordantly 0 times; of these: 3156678 (55.18%) aligned discordantly 1 time ---- 2564520 pairs aligned 0 times concordantly or discordantly; of these: 5129040 mates make up the pairs; of these: 3168846 (61.78%) aligned 0 times 968217 (18.88%) aligned exactly 1 time 991977 (19.34%) aligned >1 times 98.00% overall alignment rate Time searching: 01:17:47 Overall time: 01:17:47 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 64 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 33593515 / 72756739 = 0.4617 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 08:19:26: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX4082393/SRX4082393.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX4082393/SRX4082393.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX4082393/SRX4082393.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX4082393/SRX4082393.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 08:19:26: #1 read tag files... INFO @ Sat, 03 Apr 2021 08:19:26: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 08:19:35: 1000000 INFO @ Sat, 03 Apr 2021 08:19:45: 2000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 08:19:53: 3000000 INFO @ Sat, 03 Apr 2021 08:19:54: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX4082393/SRX4082393.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX4082393/SRX4082393.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX4082393/SRX4082393.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX4082393/SRX4082393.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 08:19:54: #1 read tag files... INFO @ Sat, 03 Apr 2021 08:19:54: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 08:20:02: 4000000 INFO @ Sat, 03 Apr 2021 08:20:04: 1000000 INFO @ Sat, 03 Apr 2021 08:20:11: 5000000 INFO @ Sat, 03 Apr 2021 08:20:14: 2000000 INFO @ Sat, 03 Apr 2021 08:20:21: 6000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 08:20:23: 3000000 INFO @ Sat, 03 Apr 2021 08:20:25: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX4082393/SRX4082393.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX4082393/SRX4082393.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX4082393/SRX4082393.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX4082393/SRX4082393.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 08:20:25: #1 read tag files... INFO @ Sat, 03 Apr 2021 08:20:25: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 08:20:31: 7000000 INFO @ Sat, 03 Apr 2021 08:20:32: 4000000 INFO @ Sat, 03 Apr 2021 08:20:33: 1000000 INFO @ Sat, 03 Apr 2021 08:20:40: 8000000 INFO @ Sat, 03 Apr 2021 08:20:41: 2000000 INFO @ Sat, 03 Apr 2021 08:20:42: 5000000 INFO @ Sat, 03 Apr 2021 08:20:50: 9000000 INFO @ Sat, 03 Apr 2021 08:20:50: 3000000 INFO @ Sat, 03 Apr 2021 08:20:52: 6000000 INFO @ Sat, 03 Apr 2021 08:20:58: 4000000 INFO @ Sat, 03 Apr 2021 08:21:00: 10000000 INFO @ Sat, 03 Apr 2021 08:21:02: 7000000 INFO @ Sat, 03 Apr 2021 08:21:05: 5000000 INFO @ Sat, 03 Apr 2021 08:21:10: 11000000 INFO @ Sat, 03 Apr 2021 08:21:12: 8000000 INFO @ Sat, 03 Apr 2021 08:21:13: 6000000 INFO @ Sat, 03 Apr 2021 08:21:19: 12000000 INFO @ Sat, 03 Apr 2021 08:21:22: 7000000 INFO @ Sat, 03 Apr 2021 08:21:22: 9000000 INFO @ Sat, 03 Apr 2021 08:21:29: 13000000 INFO @ Sat, 03 Apr 2021 08:21:29: 8000000 INFO @ Sat, 03 Apr 2021 08:21:31: 10000000 INFO @ Sat, 03 Apr 2021 08:21:38: 9000000 INFO @ Sat, 03 Apr 2021 08:21:39: 14000000 INFO @ Sat, 03 Apr 2021 08:21:43: 11000000 INFO @ Sat, 03 Apr 2021 08:21:46: 10000000 INFO @ Sat, 03 Apr 2021 08:21:49: 15000000 INFO @ Sat, 03 Apr 2021 08:21:52: 12000000 INFO @ Sat, 03 Apr 2021 08:21:55: 11000000 INFO @ Sat, 03 Apr 2021 08:21:58: 16000000 INFO @ Sat, 03 Apr 2021 08:22:03: 13000000 INFO @ Sat, 03 Apr 2021 08:22:03: 12000000 INFO @ Sat, 03 Apr 2021 08:22:07: 17000000 INFO @ Sat, 03 Apr 2021 08:22:12: 14000000 INFO @ Sat, 03 Apr 2021 08:22:12: 13000000 INFO @ Sat, 03 Apr 2021 08:22:19: 14000000 INFO @ Sat, 03 Apr 2021 08:22:19: 18000000 INFO @ Sat, 03 Apr 2021 08:22:21: 15000000 INFO @ Sat, 03 Apr 2021 08:22:27: 15000000 INFO @ Sat, 03 Apr 2021 08:22:30: 19000000 INFO @ Sat, 03 Apr 2021 08:22:32: 16000000 INFO @ Sat, 03 Apr 2021 08:22:36: 16000000 INFO @ Sat, 03 Apr 2021 08:22:39: 20000000 INFO @ Sat, 03 Apr 2021 08:22:42: 17000000 INFO @ Sat, 03 Apr 2021 08:22:44: 17000000 INFO @ Sat, 03 Apr 2021 08:22:51: 21000000 INFO @ Sat, 03 Apr 2021 08:22:52: 18000000 INFO @ Sat, 03 Apr 2021 08:22:52: 18000000 INFO @ Sat, 03 Apr 2021 08:23:00: 22000000 INFO @ Sat, 03 Apr 2021 08:23:00: 19000000 INFO @ Sat, 03 Apr 2021 08:23:00: 19000000 INFO @ Sat, 03 Apr 2021 08:23:08: 20000000 INFO @ Sat, 03 Apr 2021 08:23:08: 23000000 INFO @ Sat, 03 Apr 2021 08:23:09: 20000000 INFO @ Sat, 03 Apr 2021 08:23:16: 21000000 INFO @ Sat, 03 Apr 2021 08:23:17: 24000000 INFO @ Sat, 03 Apr 2021 08:23:17: 21000000 INFO @ Sat, 03 Apr 2021 08:23:26: 22000000 INFO @ Sat, 03 Apr 2021 08:23:26: 22000000 INFO @ Sat, 03 Apr 2021 08:23:27: 25000000 INFO @ Sat, 03 Apr 2021 08:23:34: 23000000 INFO @ Sat, 03 Apr 2021 08:23:36: 23000000 INFO @ Sat, 03 Apr 2021 08:23:37: 26000000 INFO @ Sat, 03 Apr 2021 08:23:41: 24000000 INFO @ Sat, 03 Apr 2021 08:23:46: 27000000 INFO @ Sat, 03 Apr 2021 08:23:46: 24000000 INFO @ Sat, 03 Apr 2021 08:23:49: 25000000 INFO @ Sat, 03 Apr 2021 08:23:55: 28000000 INFO @ Sat, 03 Apr 2021 08:23:55: 25000000 INFO @ Sat, 03 Apr 2021 08:23:58: 26000000 INFO @ Sat, 03 Apr 2021 08:24:04: 29000000 INFO @ Sat, 03 Apr 2021 08:24:04: 26000000 INFO @ Sat, 03 Apr 2021 08:24:05: 27000000 INFO @ Sat, 03 Apr 2021 08:24:12: 30000000 INFO @ Sat, 03 Apr 2021 08:24:13: 27000000 INFO @ Sat, 03 Apr 2021 08:24:13: 28000000 INFO @ Sat, 03 Apr 2021 08:24:20: 31000000 INFO @ Sat, 03 Apr 2021 08:24:21: 28000000 INFO @ Sat, 03 Apr 2021 08:24:21: 29000000 INFO @ Sat, 03 Apr 2021 08:24:28: 32000000 INFO @ Sat, 03 Apr 2021 08:24:29: 29000000 INFO @ Sat, 03 Apr 2021 08:24:32: 30000000 INFO @ Sat, 03 Apr 2021 08:24:37: 30000000 INFO @ Sat, 03 Apr 2021 08:24:37: 33000000 INFO @ Sat, 03 Apr 2021 08:24:43: 31000000 INFO @ Sat, 03 Apr 2021 08:24:45: 34000000 INFO @ Sat, 03 Apr 2021 08:24:45: 31000000 INFO @ Sat, 03 Apr 2021 08:24:52: 32000000 INFO @ Sat, 03 Apr 2021 08:24:53: 32000000 INFO @ Sat, 03 Apr 2021 08:24:53: 35000000 INFO @ Sat, 03 Apr 2021 08:25:00: 33000000 INFO @ Sat, 03 Apr 2021 08:25:00: 33000000 INFO @ Sat, 03 Apr 2021 08:25:01: 36000000 INFO @ Sat, 03 Apr 2021 08:25:07: 34000000 INFO @ Sat, 03 Apr 2021 08:25:08: 34000000 INFO @ Sat, 03 Apr 2021 08:25:08: 37000000 INFO @ Sat, 03 Apr 2021 08:25:15: 35000000 INFO @ Sat, 03 Apr 2021 08:25:15: 35000000 INFO @ Sat, 03 Apr 2021 08:25:16: 38000000 INFO @ Sat, 03 Apr 2021 08:25:22: 36000000 INFO @ Sat, 03 Apr 2021 08:25:23: 36000000 INFO @ Sat, 03 Apr 2021 08:25:24: 39000000 INFO @ Sat, 03 Apr 2021 08:25:30: 37000000 INFO @ Sat, 03 Apr 2021 08:25:30: 37000000 INFO @ Sat, 03 Apr 2021 08:25:31: 40000000 INFO @ Sat, 03 Apr 2021 08:25:36: 38000000 INFO @ Sat, 03 Apr 2021 08:25:38: 38000000 INFO @ Sat, 03 Apr 2021 08:25:40: 41000000 INFO @ Sat, 03 Apr 2021 08:25:44: 39000000 INFO @ Sat, 03 Apr 2021 08:25:46: 39000000 INFO @ Sat, 03 Apr 2021 08:25:48: 42000000 INFO @ Sat, 03 Apr 2021 08:25:51: 40000000 INFO @ Sat, 03 Apr 2021 08:25:54: 40000000 INFO @ Sat, 03 Apr 2021 08:25:56: 43000000 INFO @ Sat, 03 Apr 2021 08:25:59: 41000000 INFO @ Sat, 03 Apr 2021 08:26:01: 41000000 INFO @ Sat, 03 Apr 2021 08:26:03: 44000000 INFO @ Sat, 03 Apr 2021 08:26:06: 42000000 INFO @ Sat, 03 Apr 2021 08:26:09: 42000000 INFO @ Sat, 03 Apr 2021 08:26:11: 45000000 INFO @ Sat, 03 Apr 2021 08:26:13: 43000000 INFO @ Sat, 03 Apr 2021 08:26:16: 43000000 INFO @ Sat, 03 Apr 2021 08:26:18: 46000000 INFO @ Sat, 03 Apr 2021 08:26:22: 44000000 INFO @ Sat, 03 Apr 2021 08:26:23: 44000000 INFO @ Sat, 03 Apr 2021 08:26:26: 47000000 INFO @ Sat, 03 Apr 2021 08:26:29: 45000000 INFO @ Sat, 03 Apr 2021 08:26:30: 45000000 INFO @ Sat, 03 Apr 2021 08:26:34: 48000000 INFO @ Sat, 03 Apr 2021 08:26:37: 46000000 INFO @ Sat, 03 Apr 2021 08:26:38: 46000000 INFO @ Sat, 03 Apr 2021 08:26:41: 49000000 INFO @ Sat, 03 Apr 2021 08:26:43: 47000000 INFO @ Sat, 03 Apr 2021 08:26:45: 47000000 INFO @ Sat, 03 Apr 2021 08:26:48: 50000000 INFO @ Sat, 03 Apr 2021 08:26:51: 48000000 INFO @ Sat, 03 Apr 2021 08:26:53: 48000000 INFO @ Sat, 03 Apr 2021 08:26:56: 51000000 INFO @ Sat, 03 Apr 2021 08:26:58: 49000000 INFO @ Sat, 03 Apr 2021 08:27:00: 49000000 INFO @ Sat, 03 Apr 2021 08:27:04: 52000000 INFO @ Sat, 03 Apr 2021 08:27:05: 50000000 INFO @ Sat, 03 Apr 2021 08:27:08: 50000000 INFO @ Sat, 03 Apr 2021 08:27:12: 53000000 INFO @ Sat, 03 Apr 2021 08:27:12: 51000000 INFO @ Sat, 03 Apr 2021 08:27:15: 51000000 INFO @ Sat, 03 Apr 2021 08:27:19: 54000000 INFO @ Sat, 03 Apr 2021 08:27:20: 52000000 INFO @ Sat, 03 Apr 2021 08:27:23: 52000000 INFO @ Sat, 03 Apr 2021 08:27:27: 53000000 INFO @ Sat, 03 Apr 2021 08:27:27: 55000000 INFO @ Sat, 03 Apr 2021 08:27:31: 53000000 INFO @ Sat, 03 Apr 2021 08:27:34: 54000000 INFO @ Sat, 03 Apr 2021 08:27:35: 56000000 INFO @ Sat, 03 Apr 2021 08:27:39: 54000000 INFO @ Sat, 03 Apr 2021 08:27:42: 55000000 INFO @ Sat, 03 Apr 2021 08:27:42: 57000000 INFO @ Sat, 03 Apr 2021 08:27:46: 55000000 INFO @ Sat, 03 Apr 2021 08:27:49: 56000000 INFO @ Sat, 03 Apr 2021 08:27:50: 58000000 INFO @ Sat, 03 Apr 2021 08:27:53: 56000000 INFO @ Sat, 03 Apr 2021 08:27:56: 57000000 INFO @ Sat, 03 Apr 2021 08:27:57: 59000000 INFO @ Sat, 03 Apr 2021 08:28:00: 57000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 08:28:03: 58000000 INFO @ Sat, 03 Apr 2021 08:28:04: 60000000 INFO @ Sat, 03 Apr 2021 08:28:08: 58000000 INFO @ Sat, 03 Apr 2021 08:28:10: 59000000 INFO @ Sat, 03 Apr 2021 08:28:11: 61000000 INFO @ Sat, 03 Apr 2021 08:28:15: 59000000 INFO @ Sat, 03 Apr 2021 08:28:17: 60000000 INFO @ Sat, 03 Apr 2021 08:28:19: 62000000 INFO @ Sat, 03 Apr 2021 08:28:22: 60000000 INFO @ Sat, 03 Apr 2021 08:28:25: 61000000 INFO @ Sat, 03 Apr 2021 08:28:26: 63000000 INFO @ Sat, 03 Apr 2021 08:28:30: 61000000 INFO @ Sat, 03 Apr 2021 08:28:32: 62000000 INFO @ Sat, 03 Apr 2021 08:28:34: 64000000 INFO @ Sat, 03 Apr 2021 08:28:38: 62000000 INFO @ Sat, 03 Apr 2021 08:28:38: 63000000 INFO @ Sat, 03 Apr 2021 08:28:42: 65000000 INFO @ Sat, 03 Apr 2021 08:28:45: 64000000 INFO @ Sat, 03 Apr 2021 08:28:45: 63000000 INFO @ Sat, 03 Apr 2021 08:28:49: 66000000 INFO @ Sat, 03 Apr 2021 08:28:52: 65000000 INFO @ Sat, 03 Apr 2021 08:28:53: 64000000 INFO @ Sat, 03 Apr 2021 08:28:58: 67000000 INFO @ Sat, 03 Apr 2021 08:28:58: 66000000 INFO @ Sat, 03 Apr 2021 08:29:01: 65000000 INFO @ Sat, 03 Apr 2021 08:29:05: 67000000 INFO @ Sat, 03 Apr 2021 08:29:06: 68000000 INFO @ Sat, 03 Apr 2021 08:29:10: 66000000 INFO @ Sat, 03 Apr 2021 08:29:13: 68000000 INFO @ Sat, 03 Apr 2021 08:29:14: 69000000 INFO @ Sat, 03 Apr 2021 08:29:17: 67000000 INFO @ Sat, 03 Apr 2021 08:29:21: 69000000 INFO @ Sat, 03 Apr 2021 08:29:22: 70000000 INFO @ Sat, 03 Apr 2021 08:29:25: 68000000 INFO @ Sat, 03 Apr 2021 08:29:28: 70000000 INFO @ Sat, 03 Apr 2021 08:29:30: 71000000 BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 08:29:33: 69000000 INFO @ Sat, 03 Apr 2021 08:29:35: 71000000 INFO @ Sat, 03 Apr 2021 08:29:37: 72000000 INFO @ Sat, 03 Apr 2021 08:29:41: 70000000 INFO @ Sat, 03 Apr 2021 08:29:42: 72000000 INFO @ Sat, 03 Apr 2021 08:29:46: 73000000 INFO @ Sat, 03 Apr 2021 08:29:49: 73000000 INFO @ Sat, 03 Apr 2021 08:29:50: 71000000 INFO @ Sat, 03 Apr 2021 08:29:54: 74000000 INFO @ Sat, 03 Apr 2021 08:29:56: 74000000 INFO @ Sat, 03 Apr 2021 08:29:59: 72000000 INFO @ Sat, 03 Apr 2021 08:30:02: 75000000 INFO @ Sat, 03 Apr 2021 08:30:06: 75000000 INFO @ Sat, 03 Apr 2021 08:30:07: 73000000 INFO @ Sat, 03 Apr 2021 08:30:11: 76000000 INFO @ Sat, 03 Apr 2021 08:30:15: 74000000 INFO @ Sat, 03 Apr 2021 08:30:17: 76000000 INFO @ Sat, 03 Apr 2021 08:30:18: 77000000 INFO @ Sat, 03 Apr 2021 08:30:23: 75000000 INFO @ Sat, 03 Apr 2021 08:30:26: 78000000 INFO @ Sat, 03 Apr 2021 08:30:28: 77000000 INFO @ Sat, 03 Apr 2021 08:30:32: 76000000 INFO @ Sat, 03 Apr 2021 08:30:35: 79000000 INFO @ Sat, 03 Apr 2021 08:30:39: 77000000 INFO @ Sat, 03 Apr 2021 08:30:39: 78000000 INFO @ Sat, 03 Apr 2021 08:30:43: 80000000 INFO @ Sat, 03 Apr 2021 08:30:48: 78000000 INFO @ Sat, 03 Apr 2021 08:30:51: 81000000 INFO @ Sat, 03 Apr 2021 08:30:51: 79000000 INFO @ Sat, 03 Apr 2021 08:30:56: 79000000 INFO @ Sat, 03 Apr 2021 08:30:59: 82000000 INFO @ Sat, 03 Apr 2021 08:31:00: 80000000 INFO @ Sat, 03 Apr 2021 08:31:04: 80000000 INFO @ Sat, 03 Apr 2021 08:31:07: 83000000 INFO @ Sat, 03 Apr 2021 08:31:07: 81000000 INFO @ Sat, 03 Apr 2021 08:31:12: 81000000 INFO @ Sat, 03 Apr 2021 08:31:14: 82000000 INFO @ Sat, 03 Apr 2021 08:31:15: 84000000 INFO @ Sat, 03 Apr 2021 08:31:19: 82000000 INFO @ Sat, 03 Apr 2021 08:31:21: 83000000 INFO @ Sat, 03 Apr 2021 08:31:23: 85000000 INFO @ Sat, 03 Apr 2021 08:31:27: 83000000 INFO @ Sat, 03 Apr 2021 08:31:28: 84000000 INFO @ Sat, 03 Apr 2021 08:31:31: 86000000 INFO @ Sat, 03 Apr 2021 08:31:35: 84000000 INFO @ Sat, 03 Apr 2021 08:31:35: 85000000 INFO @ Sat, 03 Apr 2021 08:31:38: 87000000 INFO @ Sat, 03 Apr 2021 08:31:42: 86000000 INFO @ Sat, 03 Apr 2021 08:31:43: 85000000 INFO @ Sat, 03 Apr 2021 08:31:46: 88000000 INFO @ Sat, 03 Apr 2021 08:31:49: #1 tag size is determined as 48 bps INFO @ Sat, 03 Apr 2021 08:31:49: #1 tag size = 48 INFO @ Sat, 03 Apr 2021 08:31:49: #1 total tags in treatment: 40499729 INFO @ Sat, 03 Apr 2021 08:31:49: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 08:31:49: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 08:31:50: 87000000 INFO @ Sat, 03 Apr 2021 08:31:50: #1 tags after filtering in treatment: 20558515 INFO @ Sat, 03 Apr 2021 08:31:50: #1 Redundant rate of treatment: 0.49 INFO @ Sat, 03 Apr 2021 08:31:50: #1 finished! INFO @ Sat, 03 Apr 2021 08:31:50: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 08:31:50: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 08:31:51: 86000000 INFO @ Sat, 03 Apr 2021 08:31:52: #2 number of paired peaks: 138 WARNING @ Sat, 03 Apr 2021 08:31:52: Fewer paired peaks (138) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 138 pairs to build model! INFO @ Sat, 03 Apr 2021 08:31:52: start model_add_line... INFO @ Sat, 03 Apr 2021 08:31:52: start X-correlation... INFO @ Sat, 03 Apr 2021 08:31:52: end of X-cor INFO @ Sat, 03 Apr 2021 08:31:52: #2 finished! INFO @ Sat, 03 Apr 2021 08:31:52: #2 predicted fragment length is 64 bps INFO @ Sat, 03 Apr 2021 08:31:52: #2 alternative fragment length(s) may be 4,64,76 bps INFO @ Sat, 03 Apr 2021 08:31:52: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX4082393/SRX4082393.05_model.r WARNING @ Sat, 03 Apr 2021 08:31:52: #2 Since the d (64) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 08:31:52: #2 You may need to consider one of the other alternative d(s): 4,64,76 WARNING @ Sat, 03 Apr 2021 08:31:52: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 08:31:52: #3 Call peaks... INFO @ Sat, 03 Apr 2021 08:31:52: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 08:31:56: 88000000 INFO @ Sat, 03 Apr 2021 08:31:57: 87000000 INFO @ Sat, 03 Apr 2021 08:31:59: #1 tag size is determined as 48 bps INFO @ Sat, 03 Apr 2021 08:31:59: #1 tag size = 48 INFO @ Sat, 03 Apr 2021 08:31:59: #1 total tags in treatment: 40499729 INFO @ Sat, 03 Apr 2021 08:31:59: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 08:31:59: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 08:32:00: #1 tags after filtering in treatment: 20558515 INFO @ Sat, 03 Apr 2021 08:32:00: #1 Redundant rate of treatment: 0.49 INFO @ Sat, 03 Apr 2021 08:32:00: #1 finished! INFO @ Sat, 03 Apr 2021 08:32:00: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 08:32:00: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 08:32:01: #2 number of paired peaks: 138 WARNING @ Sat, 03 Apr 2021 08:32:01: Fewer paired peaks (138) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 138 pairs to build model! INFO @ Sat, 03 Apr 2021 08:32:01: start model_add_line... INFO @ Sat, 03 Apr 2021 08:32:01: start X-correlation... INFO @ Sat, 03 Apr 2021 08:32:01: end of X-cor INFO @ Sat, 03 Apr 2021 08:32:01: #2 finished! INFO @ Sat, 03 Apr 2021 08:32:01: #2 predicted fragment length is 64 bps INFO @ Sat, 03 Apr 2021 08:32:01: #2 alternative fragment length(s) may be 4,64,76 bps INFO @ Sat, 03 Apr 2021 08:32:01: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX4082393/SRX4082393.20_model.r WARNING @ Sat, 03 Apr 2021 08:32:01: #2 Since the d (64) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 08:32:01: #2 You may need to consider one of the other alternative d(s): 4,64,76 WARNING @ Sat, 03 Apr 2021 08:32:01: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 08:32:01: #3 Call peaks... INFO @ Sat, 03 Apr 2021 08:32:01: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 08:32:04: 88000000 INFO @ Sat, 03 Apr 2021 08:32:06: #1 tag size is determined as 48 bps INFO @ Sat, 03 Apr 2021 08:32:06: #1 tag size = 48 INFO @ Sat, 03 Apr 2021 08:32:06: #1 total tags in treatment: 40499729 INFO @ Sat, 03 Apr 2021 08:32:06: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 08:32:06: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 08:32:07: #1 tags after filtering in treatment: 20558515 INFO @ Sat, 03 Apr 2021 08:32:07: #1 Redundant rate of treatment: 0.49 INFO @ Sat, 03 Apr 2021 08:32:07: #1 finished! INFO @ Sat, 03 Apr 2021 08:32:07: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 08:32:07: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 08:32:09: #2 number of paired peaks: 138 WARNING @ Sat, 03 Apr 2021 08:32:09: Fewer paired peaks (138) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 138 pairs to build model! INFO @ Sat, 03 Apr 2021 08:32:09: start model_add_line... INFO @ Sat, 03 Apr 2021 08:32:09: start X-correlation... INFO @ Sat, 03 Apr 2021 08:32:09: end of X-cor INFO @ Sat, 03 Apr 2021 08:32:09: #2 finished! INFO @ Sat, 03 Apr 2021 08:32:09: #2 predicted fragment length is 64 bps INFO @ Sat, 03 Apr 2021 08:32:09: #2 alternative fragment length(s) may be 4,64,76 bps INFO @ Sat, 03 Apr 2021 08:32:09: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX4082393/SRX4082393.10_model.r WARNING @ Sat, 03 Apr 2021 08:32:09: #2 Since the d (64) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 08:32:09: #2 You may need to consider one of the other alternative d(s): 4,64,76 WARNING @ Sat, 03 Apr 2021 08:32:09: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 08:32:09: #3 Call peaks... INFO @ Sat, 03 Apr 2021 08:32:09: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 08:32:27: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 08:32:36: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 08:32:44: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 08:32:46: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX4082393/SRX4082393.05_peaks.xls INFO @ Sat, 03 Apr 2021 08:32:46: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX4082393/SRX4082393.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 08:32:46: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX4082393/SRX4082393.05_summits.bed INFO @ Sat, 03 Apr 2021 08:32:46: Done! pass1 - making usageList (7 chroms): 3 millis pass2 - checking and writing primary data (13439 records, 4 fields): 21 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 08:32:55: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX4082393/SRX4082393.20_peaks.xls INFO @ Sat, 03 Apr 2021 08:32:56: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX4082393/SRX4082393.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 08:32:56: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX4082393/SRX4082393.20_summits.bed INFO @ Sat, 03 Apr 2021 08:32:56: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (2313 records, 4 fields): 8 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 08:33:02: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX4082393/SRX4082393.10_peaks.xls INFO @ Sat, 03 Apr 2021 08:33:02: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX4082393/SRX4082393.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 08:33:02: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX4082393/SRX4082393.10_summits.bed INFO @ Sat, 03 Apr 2021 08:33:02: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (6976 records, 4 fields): 9 millis CompletedMACS2peakCalling