Job ID = 12264776 SRX = SRX4082382 Genome = ce10 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 58415047 spots for SRR7164200/SRR7164200.sra Written 58415047 spots for SRR7164200/SRR7164200.sra fastq に変換しました。 bowtie でマッピング中... Your job 12265479 ("srTce11") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:46:08 58415047 reads; of these: 58415047 (100.00%) were paired; of these: 2309964 (3.95%) aligned concordantly 0 times 50583213 (86.59%) aligned concordantly exactly 1 time 5521870 (9.45%) aligned concordantly >1 times ---- 2309964 pairs aligned concordantly 0 times; of these: 802194 (34.73%) aligned discordantly 1 time ---- 1507770 pairs aligned 0 times concordantly or discordantly; of these: 3015540 mates make up the pairs; of these: 1903732 (63.13%) aligned 0 times 738845 (24.50%) aligned exactly 1 time 372963 (12.37%) aligned >1 times 98.37% overall alignment rate Time searching: 00:46:08 Overall time: 00:46:08 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 32 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 27809369 / 56887614 = 0.4888 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:11:46: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX4082382/SRX4082382.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX4082382/SRX4082382.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX4082382/SRX4082382.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX4082382/SRX4082382.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:11:46: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:11:46: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:11:51: 1000000 INFO @ Sat, 03 Apr 2021 07:11:56: 2000000 INFO @ Sat, 03 Apr 2021 07:12:01: 3000000 INFO @ Sat, 03 Apr 2021 07:12:06: 4000000 INFO @ Sat, 03 Apr 2021 07:12:11: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:12:16: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX4082382/SRX4082382.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX4082382/SRX4082382.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX4082382/SRX4082382.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX4082382/SRX4082382.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:12:16: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:12:16: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:12:16: 6000000 INFO @ Sat, 03 Apr 2021 07:12:21: 1000000 INFO @ Sat, 03 Apr 2021 07:12:21: 7000000 INFO @ Sat, 03 Apr 2021 07:12:26: 2000000 INFO @ Sat, 03 Apr 2021 07:12:26: 8000000 INFO @ Sat, 03 Apr 2021 07:12:30: 3000000 INFO @ Sat, 03 Apr 2021 07:12:31: 9000000 INFO @ Sat, 03 Apr 2021 07:12:35: 4000000 INFO @ Sat, 03 Apr 2021 07:12:36: 10000000 INFO @ Sat, 03 Apr 2021 07:12:40: 5000000 INFO @ Sat, 03 Apr 2021 07:12:41: 11000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:12:44: 6000000 INFO @ Sat, 03 Apr 2021 07:12:46: 12000000 INFO @ Sat, 03 Apr 2021 07:12:46: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX4082382/SRX4082382.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX4082382/SRX4082382.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX4082382/SRX4082382.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX4082382/SRX4082382.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:12:46: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:12:46: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:12:49: 7000000 INFO @ Sat, 03 Apr 2021 07:12:52: 13000000 INFO @ Sat, 03 Apr 2021 07:12:52: 1000000 INFO @ Sat, 03 Apr 2021 07:12:54: 8000000 INFO @ Sat, 03 Apr 2021 07:12:57: 14000000 INFO @ Sat, 03 Apr 2021 07:12:57: 2000000 INFO @ Sat, 03 Apr 2021 07:12:59: 9000000 INFO @ Sat, 03 Apr 2021 07:13:03: 15000000 INFO @ Sat, 03 Apr 2021 07:13:03: 3000000 INFO @ Sat, 03 Apr 2021 07:13:04: 10000000 INFO @ Sat, 03 Apr 2021 07:13:08: 16000000 INFO @ Sat, 03 Apr 2021 07:13:08: 4000000 INFO @ Sat, 03 Apr 2021 07:13:08: 11000000 INFO @ Sat, 03 Apr 2021 07:13:14: 12000000 INFO @ Sat, 03 Apr 2021 07:13:14: 17000000 INFO @ Sat, 03 Apr 2021 07:13:14: 5000000 INFO @ Sat, 03 Apr 2021 07:13:19: 13000000 INFO @ Sat, 03 Apr 2021 07:13:19: 18000000 INFO @ Sat, 03 Apr 2021 07:13:20: 6000000 INFO @ Sat, 03 Apr 2021 07:13:23: 14000000 INFO @ Sat, 03 Apr 2021 07:13:25: 19000000 INFO @ Sat, 03 Apr 2021 07:13:25: 7000000 INFO @ Sat, 03 Apr 2021 07:13:28: 15000000 INFO @ Sat, 03 Apr 2021 07:13:31: 20000000 INFO @ Sat, 03 Apr 2021 07:13:31: 8000000 INFO @ Sat, 03 Apr 2021 07:13:33: 16000000 INFO @ Sat, 03 Apr 2021 07:13:36: 21000000 INFO @ Sat, 03 Apr 2021 07:13:37: 9000000 INFO @ Sat, 03 Apr 2021 07:13:37: 17000000 INFO @ Sat, 03 Apr 2021 07:13:42: 18000000 INFO @ Sat, 03 Apr 2021 07:13:42: 22000000 INFO @ Sat, 03 Apr 2021 07:13:43: 10000000 INFO @ Sat, 03 Apr 2021 07:13:47: 19000000 INFO @ Sat, 03 Apr 2021 07:13:47: 23000000 INFO @ Sat, 03 Apr 2021 07:13:48: 11000000 INFO @ Sat, 03 Apr 2021 07:13:51: 20000000 INFO @ Sat, 03 Apr 2021 07:13:53: 24000000 INFO @ Sat, 03 Apr 2021 07:13:54: 12000000 INFO @ Sat, 03 Apr 2021 07:13:56: 21000000 INFO @ Sat, 03 Apr 2021 07:13:58: 25000000 INFO @ Sat, 03 Apr 2021 07:14:00: 13000000 INFO @ Sat, 03 Apr 2021 07:14:00: 22000000 INFO @ Sat, 03 Apr 2021 07:14:04: 26000000 INFO @ Sat, 03 Apr 2021 07:14:05: 23000000 INFO @ Sat, 03 Apr 2021 07:14:05: 14000000 INFO @ Sat, 03 Apr 2021 07:14:09: 27000000 INFO @ Sat, 03 Apr 2021 07:14:10: 24000000 INFO @ Sat, 03 Apr 2021 07:14:11: 15000000 INFO @ Sat, 03 Apr 2021 07:14:15: 25000000 INFO @ Sat, 03 Apr 2021 07:14:15: 28000000 INFO @ Sat, 03 Apr 2021 07:14:16: 16000000 INFO @ Sat, 03 Apr 2021 07:14:19: 26000000 INFO @ Sat, 03 Apr 2021 07:14:20: 29000000 INFO @ Sat, 03 Apr 2021 07:14:22: 17000000 INFO @ Sat, 03 Apr 2021 07:14:24: 27000000 INFO @ Sat, 03 Apr 2021 07:14:26: 30000000 INFO @ Sat, 03 Apr 2021 07:14:28: 18000000 INFO @ Sat, 03 Apr 2021 07:14:29: 28000000 INFO @ Sat, 03 Apr 2021 07:14:31: 31000000 INFO @ Sat, 03 Apr 2021 07:14:33: 19000000 INFO @ Sat, 03 Apr 2021 07:14:33: 29000000 INFO @ Sat, 03 Apr 2021 07:14:37: 32000000 INFO @ Sat, 03 Apr 2021 07:14:39: 30000000 INFO @ Sat, 03 Apr 2021 07:14:39: 20000000 INFO @ Sat, 03 Apr 2021 07:14:43: 33000000 INFO @ Sat, 03 Apr 2021 07:14:44: 31000000 INFO @ Sat, 03 Apr 2021 07:14:45: 21000000 INFO @ Sat, 03 Apr 2021 07:14:49: 34000000 INFO @ Sat, 03 Apr 2021 07:14:49: 32000000 INFO @ Sat, 03 Apr 2021 07:14:51: 22000000 INFO @ Sat, 03 Apr 2021 07:14:55: 33000000 INFO @ Sat, 03 Apr 2021 07:14:56: 35000000 INFO @ Sat, 03 Apr 2021 07:14:57: 23000000 INFO @ Sat, 03 Apr 2021 07:14:59: 34000000 INFO @ Sat, 03 Apr 2021 07:15:03: 24000000 INFO @ Sat, 03 Apr 2021 07:15:03: 36000000 INFO @ Sat, 03 Apr 2021 07:15:04: 35000000 INFO @ Sat, 03 Apr 2021 07:15:09: 37000000 INFO @ Sat, 03 Apr 2021 07:15:09: 25000000 INFO @ Sat, 03 Apr 2021 07:15:12: 36000000 INFO @ Sat, 03 Apr 2021 07:15:16: 38000000 INFO @ Sat, 03 Apr 2021 07:15:16: 26000000 INFO @ Sat, 03 Apr 2021 07:15:19: 37000000 INFO @ Sat, 03 Apr 2021 07:15:23: 39000000 INFO @ Sat, 03 Apr 2021 07:15:24: 27000000 INFO @ Sat, 03 Apr 2021 07:15:26: 38000000 INFO @ Sat, 03 Apr 2021 07:15:30: 40000000 INFO @ Sat, 03 Apr 2021 07:15:30: 28000000 INFO @ Sat, 03 Apr 2021 07:15:33: 39000000 INFO @ Sat, 03 Apr 2021 07:15:36: 41000000 INFO @ Sat, 03 Apr 2021 07:15:37: 29000000 INFO @ Sat, 03 Apr 2021 07:15:40: 40000000 INFO @ Sat, 03 Apr 2021 07:15:44: 30000000 INFO @ Sat, 03 Apr 2021 07:15:44: 42000000 INFO @ Sat, 03 Apr 2021 07:15:46: 41000000 INFO @ Sat, 03 Apr 2021 07:15:50: 31000000 INFO @ Sat, 03 Apr 2021 07:15:51: 43000000 INFO @ Sat, 03 Apr 2021 07:15:52: 42000000 INFO @ Sat, 03 Apr 2021 07:15:57: 44000000 INFO @ Sat, 03 Apr 2021 07:15:57: 32000000 INFO @ Sat, 03 Apr 2021 07:15:58: 43000000 INFO @ Sat, 03 Apr 2021 07:16:04: 33000000 INFO @ Sat, 03 Apr 2021 07:16:04: 45000000 INFO @ Sat, 03 Apr 2021 07:16:05: 44000000 INFO @ Sat, 03 Apr 2021 07:16:12: 34000000 INFO @ Sat, 03 Apr 2021 07:16:12: 45000000 INFO @ Sat, 03 Apr 2021 07:16:12: 46000000 INFO @ Sat, 03 Apr 2021 07:16:18: 46000000 INFO @ Sat, 03 Apr 2021 07:16:19: 35000000 INFO @ Sat, 03 Apr 2021 07:16:19: 47000000 INFO @ Sat, 03 Apr 2021 07:16:26: 47000000 INFO @ Sat, 03 Apr 2021 07:16:27: 48000000 INFO @ Sat, 03 Apr 2021 07:16:27: 36000000 INFO @ Sat, 03 Apr 2021 07:16:33: 48000000 INFO @ Sat, 03 Apr 2021 07:16:34: 49000000 INFO @ Sat, 03 Apr 2021 07:16:36: 37000000 INFO @ Sat, 03 Apr 2021 07:16:40: 50000000 INFO @ Sat, 03 Apr 2021 07:16:40: 49000000 INFO @ Sat, 03 Apr 2021 07:16:42: 38000000 INFO @ Sat, 03 Apr 2021 07:16:46: 51000000 INFO @ Sat, 03 Apr 2021 07:16:47: 50000000 INFO @ Sat, 03 Apr 2021 07:16:48: 39000000 INFO @ Sat, 03 Apr 2021 07:16:53: 52000000 INFO @ Sat, 03 Apr 2021 07:16:53: 51000000 INFO @ Sat, 03 Apr 2021 07:16:56: 40000000 INFO @ Sat, 03 Apr 2021 07:16:59: 52000000 INFO @ Sat, 03 Apr 2021 07:16:59: 53000000 INFO @ Sat, 03 Apr 2021 07:17:03: 41000000 INFO @ Sat, 03 Apr 2021 07:17:05: 53000000 INFO @ Sat, 03 Apr 2021 07:17:06: 54000000 INFO @ Sat, 03 Apr 2021 07:17:10: 54000000 INFO @ Sat, 03 Apr 2021 07:17:10: 42000000 INFO @ Sat, 03 Apr 2021 07:17:13: 55000000 INFO @ Sat, 03 Apr 2021 07:17:16: 55000000 INFO @ Sat, 03 Apr 2021 07:17:17: 43000000 INFO @ Sat, 03 Apr 2021 07:17:19: 56000000 INFO @ Sat, 03 Apr 2021 07:17:22: 56000000 INFO @ Sat, 03 Apr 2021 07:17:24: 44000000 INFO @ Sat, 03 Apr 2021 07:17:27: 57000000 INFO @ Sat, 03 Apr 2021 07:17:27: 57000000 INFO @ Sat, 03 Apr 2021 07:17:32: 45000000 INFO @ Sat, 03 Apr 2021 07:17:33: 58000000 INFO @ Sat, 03 Apr 2021 07:17:34: 58000000 INFO @ Sat, 03 Apr 2021 07:17:38: 59000000 INFO @ Sat, 03 Apr 2021 07:17:38: 46000000 INFO @ Sat, 03 Apr 2021 07:17:40: #1 tag size is determined as 32 bps INFO @ Sat, 03 Apr 2021 07:17:40: #1 tag size = 32 INFO @ Sat, 03 Apr 2021 07:17:40: #1 total tags in treatment: 28373523 INFO @ Sat, 03 Apr 2021 07:17:40: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 07:17:40: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 07:17:41: #1 tags after filtering in treatment: 16780198 INFO @ Sat, 03 Apr 2021 07:17:41: #1 Redundant rate of treatment: 0.41 INFO @ Sat, 03 Apr 2021 07:17:41: #1 finished! INFO @ Sat, 03 Apr 2021 07:17:41: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 07:17:41: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 07:17:41: 59000000 INFO @ Sat, 03 Apr 2021 07:17:42: #2 number of paired peaks: 297 WARNING @ Sat, 03 Apr 2021 07:17:42: Fewer paired peaks (297) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 297 pairs to build model! INFO @ Sat, 03 Apr 2021 07:17:42: start model_add_line... INFO @ Sat, 03 Apr 2021 07:17:42: start X-correlation... INFO @ Sat, 03 Apr 2021 07:17:43: end of X-cor INFO @ Sat, 03 Apr 2021 07:17:43: #2 finished! INFO @ Sat, 03 Apr 2021 07:17:43: #2 predicted fragment length is 86 bps INFO @ Sat, 03 Apr 2021 07:17:43: #2 alternative fragment length(s) may be 86 bps INFO @ Sat, 03 Apr 2021 07:17:43: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX4082382/SRX4082382.10_model.r INFO @ Sat, 03 Apr 2021 07:17:43: #3 Call peaks... INFO @ Sat, 03 Apr 2021 07:17:43: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 07:17:44: #1 tag size is determined as 32 bps INFO @ Sat, 03 Apr 2021 07:17:44: #1 tag size = 32 INFO @ Sat, 03 Apr 2021 07:17:44: #1 total tags in treatment: 28373523 INFO @ Sat, 03 Apr 2021 07:17:44: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 07:17:44: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 07:17:45: #1 tags after filtering in treatment: 16780198 INFO @ Sat, 03 Apr 2021 07:17:45: #1 Redundant rate of treatment: 0.41 INFO @ Sat, 03 Apr 2021 07:17:45: #1 finished! INFO @ Sat, 03 Apr 2021 07:17:45: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 07:17:45: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 07:17:46: 47000000 INFO @ Sat, 03 Apr 2021 07:17:47: #2 number of paired peaks: 297 WARNING @ Sat, 03 Apr 2021 07:17:47: Fewer paired peaks (297) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 297 pairs to build model! INFO @ Sat, 03 Apr 2021 07:17:47: start model_add_line... INFO @ Sat, 03 Apr 2021 07:17:47: start X-correlation... INFO @ Sat, 03 Apr 2021 07:17:47: end of X-cor INFO @ Sat, 03 Apr 2021 07:17:47: #2 finished! INFO @ Sat, 03 Apr 2021 07:17:47: #2 predicted fragment length is 86 bps INFO @ Sat, 03 Apr 2021 07:17:47: #2 alternative fragment length(s) may be 86 bps INFO @ Sat, 03 Apr 2021 07:17:47: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX4082382/SRX4082382.05_model.r INFO @ Sat, 03 Apr 2021 07:17:47: #3 Call peaks... INFO @ Sat, 03 Apr 2021 07:17:47: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 07:17:53: 48000000 INFO @ Sat, 03 Apr 2021 07:18:00: 49000000 INFO @ Sat, 03 Apr 2021 07:18:08: 50000000 INFO @ Sat, 03 Apr 2021 07:18:15: 51000000 INFO @ Sat, 03 Apr 2021 07:18:21: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 07:18:22: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 07:18:22: 52000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 07:18:28: 53000000 INFO @ Sat, 03 Apr 2021 07:18:34: 54000000 INFO @ Sat, 03 Apr 2021 07:18:41: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX4082382/SRX4082382.10_peaks.xls INFO @ Sat, 03 Apr 2021 07:18:41: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX4082382/SRX4082382.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 07:18:41: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX4082382/SRX4082382.10_summits.bed INFO @ Sat, 03 Apr 2021 07:18:41: Done! pass1 - making usageList (7 chroms): 6 millis pass2 - checking and writing primary data (7132 records, 4 fields): 14 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 07:18:42: 55000000 INFO @ Sat, 03 Apr 2021 07:18:44: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX4082382/SRX4082382.05_peaks.xls INFO @ Sat, 03 Apr 2021 07:18:44: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX4082382/SRX4082382.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 07:18:44: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX4082382/SRX4082382.05_summits.bed INFO @ Sat, 03 Apr 2021 07:18:44: Done! pass1 - making usageList (7 chroms): 3 millis pass2 - checking and writing primary data (11561 records, 4 fields): 21 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 07:18:48: 56000000 INFO @ Sat, 03 Apr 2021 07:18:54: 57000000 INFO @ Sat, 03 Apr 2021 07:19:00: 58000000 INFO @ Sat, 03 Apr 2021 07:19:07: 59000000 INFO @ Sat, 03 Apr 2021 07:19:09: #1 tag size is determined as 32 bps INFO @ Sat, 03 Apr 2021 07:19:09: #1 tag size = 32 INFO @ Sat, 03 Apr 2021 07:19:09: #1 total tags in treatment: 28373523 INFO @ Sat, 03 Apr 2021 07:19:09: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 07:19:09: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 07:19:10: #1 tags after filtering in treatment: 16780198 INFO @ Sat, 03 Apr 2021 07:19:10: #1 Redundant rate of treatment: 0.41 INFO @ Sat, 03 Apr 2021 07:19:10: #1 finished! INFO @ Sat, 03 Apr 2021 07:19:10: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 07:19:10: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 07:19:11: #2 number of paired peaks: 297 WARNING @ Sat, 03 Apr 2021 07:19:11: Fewer paired peaks (297) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 297 pairs to build model! INFO @ Sat, 03 Apr 2021 07:19:11: start model_add_line... INFO @ Sat, 03 Apr 2021 07:19:11: start X-correlation... INFO @ Sat, 03 Apr 2021 07:19:11: end of X-cor INFO @ Sat, 03 Apr 2021 07:19:11: #2 finished! INFO @ Sat, 03 Apr 2021 07:19:11: #2 predicted fragment length is 86 bps INFO @ Sat, 03 Apr 2021 07:19:11: #2 alternative fragment length(s) may be 86 bps INFO @ Sat, 03 Apr 2021 07:19:11: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX4082382/SRX4082382.20_model.r INFO @ Sat, 03 Apr 2021 07:19:11: #3 Call peaks... INFO @ Sat, 03 Apr 2021 07:19:11: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 07:19:44: #3 Call peaks for each chromosome... BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 07:20:02: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX4082382/SRX4082382.20_peaks.xls INFO @ Sat, 03 Apr 2021 07:20:02: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX4082382/SRX4082382.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 07:20:02: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX4082382/SRX4082382.20_summits.bed INFO @ Sat, 03 Apr 2021 07:20:02: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (3473 records, 4 fields): 6 millis CompletedMACS2peakCalling