Job ID = 1292372 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... spots read : 46,942,664 reads read : 93,885,328 reads written : 93,885,328 rm: cannot remove ‘[DSE]RR*’: No such file or directory rm: cannot remove ‘fastqDump_tmp*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:00:46 46942664 reads; of these: 46942664 (100.00%) were paired; of these: 3587724 (7.64%) aligned concordantly 0 times 40550179 (86.38%) aligned concordantly exactly 1 time 2804761 (5.97%) aligned concordantly >1 times ---- 3587724 pairs aligned concordantly 0 times; of these: 1103634 (30.76%) aligned discordantly 1 time ---- 2484090 pairs aligned 0 times concordantly or discordantly; of these: 4968180 mates make up the pairs; of these: 3873782 (77.97%) aligned 0 times 786440 (15.83%) aligned exactly 1 time 307958 (6.20%) aligned >1 times 95.87% overall alignment rate Time searching: 01:00:46 Overall time: 01:00:46 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 40 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 11556227 / 44210544 = 0.2614 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Sun, 02 Jun 2019 20:26:02: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX3733159/SRX3733159.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX3733159/SRX3733159.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX3733159/SRX3733159.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX3733159/SRX3733159.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 02 Jun 2019 20:26:02: #1 read tag files... INFO @ Sun, 02 Jun 2019 20:26:02: #1 read treatment tags... INFO @ Sun, 02 Jun 2019 20:26:02: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX3733159/SRX3733159.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX3733159/SRX3733159.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX3733159/SRX3733159.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX3733159/SRX3733159.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 02 Jun 2019 20:26:02: #1 read tag files... INFO @ Sun, 02 Jun 2019 20:26:02: #1 read treatment tags... INFO @ Sun, 02 Jun 2019 20:26:02: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX3733159/SRX3733159.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX3733159/SRX3733159.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX3733159/SRX3733159.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX3733159/SRX3733159.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 02 Jun 2019 20:26:02: #1 read tag files... INFO @ Sun, 02 Jun 2019 20:26:02: #1 read treatment tags... INFO @ Sun, 02 Jun 2019 20:26:10: 1000000 INFO @ Sun, 02 Jun 2019 20:26:11: 1000000 INFO @ Sun, 02 Jun 2019 20:26:13: 1000000 INFO @ Sun, 02 Jun 2019 20:26:18: 2000000 INFO @ Sun, 02 Jun 2019 20:26:20: 2000000 INFO @ Sun, 02 Jun 2019 20:26:24: 2000000 INFO @ Sun, 02 Jun 2019 20:26:25: 3000000 INFO @ Sun, 02 Jun 2019 20:26:28: 3000000 INFO @ Sun, 02 Jun 2019 20:26:33: 4000000 INFO @ Sun, 02 Jun 2019 20:26:35: 3000000 INFO @ Sun, 02 Jun 2019 20:26:37: 4000000 INFO @ Sun, 02 Jun 2019 20:26:41: 5000000 INFO @ Sun, 02 Jun 2019 20:26:46: 5000000 INFO @ Sun, 02 Jun 2019 20:26:46: 4000000 INFO @ Sun, 02 Jun 2019 20:26:48: 6000000 INFO @ Sun, 02 Jun 2019 20:26:54: 6000000 INFO @ Sun, 02 Jun 2019 20:26:56: 7000000 INFO @ Sun, 02 Jun 2019 20:26:56: 5000000 INFO @ Sun, 02 Jun 2019 20:27:03: 7000000 INFO @ Sun, 02 Jun 2019 20:27:04: 8000000 INFO @ Sun, 02 Jun 2019 20:27:07: 6000000 INFO @ Sun, 02 Jun 2019 20:27:11: 9000000 INFO @ Sun, 02 Jun 2019 20:27:11: 8000000 INFO @ Sun, 02 Jun 2019 20:27:18: 7000000 INFO @ Sun, 02 Jun 2019 20:27:19: 10000000 INFO @ Sun, 02 Jun 2019 20:27:20: 9000000 INFO @ Sun, 02 Jun 2019 20:27:27: 11000000 INFO @ Sun, 02 Jun 2019 20:27:28: 8000000 INFO @ Sun, 02 Jun 2019 20:27:28: 10000000 INFO @ Sun, 02 Jun 2019 20:27:34: 12000000 INFO @ Sun, 02 Jun 2019 20:27:37: 11000000 INFO @ Sun, 02 Jun 2019 20:27:39: 9000000 INFO @ Sun, 02 Jun 2019 20:27:42: 13000000 INFO @ Sun, 02 Jun 2019 20:27:46: 12000000 INFO @ Sun, 02 Jun 2019 20:27:50: 10000000 INFO @ Sun, 02 Jun 2019 20:27:50: 14000000 INFO @ Sun, 02 Jun 2019 20:27:55: 13000000 INFO @ Sun, 02 Jun 2019 20:27:57: 15000000 INFO @ Sun, 02 Jun 2019 20:28:01: 11000000 INFO @ Sun, 02 Jun 2019 20:28:04: 14000000 INFO @ Sun, 02 Jun 2019 20:28:05: 16000000 INFO @ Sun, 02 Jun 2019 20:28:12: 12000000 INFO @ Sun, 02 Jun 2019 20:28:12: 15000000 INFO @ Sun, 02 Jun 2019 20:28:12: 17000000 INFO @ Sun, 02 Jun 2019 20:28:20: 18000000 INFO @ Sun, 02 Jun 2019 20:28:20: 16000000 INFO @ Sun, 02 Jun 2019 20:28:24: 13000000 INFO @ Sun, 02 Jun 2019 20:28:27: 19000000 INFO @ Sun, 02 Jun 2019 20:28:28: 17000000 INFO @ Sun, 02 Jun 2019 20:28:34: 20000000 INFO @ Sun, 02 Jun 2019 20:28:35: 14000000 INFO @ Sun, 02 Jun 2019 20:28:36: 18000000 INFO @ Sun, 02 Jun 2019 20:28:42: 21000000 INFO @ Sun, 02 Jun 2019 20:28:44: 19000000 INFO @ Sun, 02 Jun 2019 20:28:45: 15000000 INFO @ Sun, 02 Jun 2019 20:28:49: 22000000 INFO @ Sun, 02 Jun 2019 20:28:52: 20000000 INFO @ Sun, 02 Jun 2019 20:28:56: 16000000 INFO @ Sun, 02 Jun 2019 20:28:57: 23000000 INFO @ Sun, 02 Jun 2019 20:29:01: 21000000 INFO @ Sun, 02 Jun 2019 20:29:05: 24000000 INFO @ Sun, 02 Jun 2019 20:29:06: 17000000 INFO @ Sun, 02 Jun 2019 20:29:09: 22000000 INFO @ Sun, 02 Jun 2019 20:29:12: 25000000 INFO @ Sun, 02 Jun 2019 20:29:16: 18000000 INFO @ Sun, 02 Jun 2019 20:29:17: 23000000 INFO @ Sun, 02 Jun 2019 20:29:20: 26000000 INFO @ Sun, 02 Jun 2019 20:29:25: 19000000 INFO @ Sun, 02 Jun 2019 20:29:25: 24000000 INFO @ Sun, 02 Jun 2019 20:29:28: 27000000 INFO @ Sun, 02 Jun 2019 20:29:33: 20000000 INFO @ Sun, 02 Jun 2019 20:29:34: 25000000 INFO @ Sun, 02 Jun 2019 20:29:35: 28000000 INFO @ Sun, 02 Jun 2019 20:29:40: 21000000 INFO @ Sun, 02 Jun 2019 20:29:42: 26000000 INFO @ Sun, 02 Jun 2019 20:29:43: 29000000 INFO @ Sun, 02 Jun 2019 20:29:47: 22000000 INFO @ Sun, 02 Jun 2019 20:29:51: 30000000 INFO @ Sun, 02 Jun 2019 20:29:51: 27000000 INFO @ Sun, 02 Jun 2019 20:29:54: 23000000 INFO @ Sun, 02 Jun 2019 20:29:58: 31000000 INFO @ Sun, 02 Jun 2019 20:30:00: 28000000 INFO @ Sun, 02 Jun 2019 20:30:02: 24000000 INFO @ Sun, 02 Jun 2019 20:30:06: 32000000 INFO @ Sun, 02 Jun 2019 20:30:08: 29000000 INFO @ Sun, 02 Jun 2019 20:30:09: 25000000 INFO @ Sun, 02 Jun 2019 20:30:13: 33000000 INFO @ Sun, 02 Jun 2019 20:30:17: 26000000 INFO @ Sun, 02 Jun 2019 20:30:17: 30000000 INFO @ Sun, 02 Jun 2019 20:30:21: 34000000 INFO @ Sun, 02 Jun 2019 20:30:24: 27000000 INFO @ Sun, 02 Jun 2019 20:30:25: 31000000 INFO @ Sun, 02 Jun 2019 20:30:28: 35000000 INFO @ Sun, 02 Jun 2019 20:30:32: 28000000 INFO @ Sun, 02 Jun 2019 20:30:34: 32000000 INFO @ Sun, 02 Jun 2019 20:30:35: 36000000 INFO @ Sun, 02 Jun 2019 20:30:39: 29000000 INFO @ Sun, 02 Jun 2019 20:30:42: 33000000 INFO @ Sun, 02 Jun 2019 20:30:43: 37000000 INFO @ Sun, 02 Jun 2019 20:30:48: 30000000 INFO @ Sun, 02 Jun 2019 20:30:50: 38000000 INFO @ Sun, 02 Jun 2019 20:30:51: 34000000 INFO @ Sun, 02 Jun 2019 20:30:57: 39000000 INFO @ Sun, 02 Jun 2019 20:30:58: 31000000 INFO @ Sun, 02 Jun 2019 20:30:59: 35000000 INFO @ Sun, 02 Jun 2019 20:31:05: 40000000 INFO @ Sun, 02 Jun 2019 20:31:07: 36000000 INFO @ Sun, 02 Jun 2019 20:31:08: 32000000 INFO @ Sun, 02 Jun 2019 20:31:12: 41000000 INFO @ Sun, 02 Jun 2019 20:31:16: 37000000 INFO @ Sun, 02 Jun 2019 20:31:17: 33000000 INFO @ Sun, 02 Jun 2019 20:31:20: 42000000 INFO @ Sun, 02 Jun 2019 20:31:24: 38000000 INFO @ Sun, 02 Jun 2019 20:31:25: 34000000 INFO @ Sun, 02 Jun 2019 20:31:27: 43000000 INFO @ Sun, 02 Jun 2019 20:31:32: 39000000 INFO @ Sun, 02 Jun 2019 20:31:33: 35000000 INFO @ Sun, 02 Jun 2019 20:31:34: 44000000 INFO @ Sun, 02 Jun 2019 20:31:40: 40000000 INFO @ Sun, 02 Jun 2019 20:31:42: 36000000 INFO @ Sun, 02 Jun 2019 20:31:42: 45000000 INFO @ Sun, 02 Jun 2019 20:31:48: 41000000 INFO @ Sun, 02 Jun 2019 20:31:49: 46000000 INFO @ Sun, 02 Jun 2019 20:31:50: 37000000 INFO @ Sun, 02 Jun 2019 20:31:56: 42000000 INFO @ Sun, 02 Jun 2019 20:31:57: 47000000 INFO @ Sun, 02 Jun 2019 20:31:58: 38000000 INFO @ Sun, 02 Jun 2019 20:32:04: 48000000 INFO @ Sun, 02 Jun 2019 20:32:05: 43000000 INFO @ Sun, 02 Jun 2019 20:32:06: 39000000 INFO @ Sun, 02 Jun 2019 20:32:12: 49000000 INFO @ Sun, 02 Jun 2019 20:32:13: 44000000 INFO @ Sun, 02 Jun 2019 20:32:14: 40000000 INFO @ Sun, 02 Jun 2019 20:32:19: 50000000 INFO @ Sun, 02 Jun 2019 20:32:21: 45000000 INFO @ Sun, 02 Jun 2019 20:32:22: 41000000 INFO @ Sun, 02 Jun 2019 20:32:27: 51000000 INFO @ Sun, 02 Jun 2019 20:32:29: 46000000 INFO @ Sun, 02 Jun 2019 20:32:30: 42000000 INFO @ Sun, 02 Jun 2019 20:32:34: 52000000 INFO @ Sun, 02 Jun 2019 20:32:38: 43000000 INFO @ Sun, 02 Jun 2019 20:32:38: 47000000 INFO @ Sun, 02 Jun 2019 20:32:41: 53000000 INFO @ Sun, 02 Jun 2019 20:32:46: 44000000 INFO @ Sun, 02 Jun 2019 20:32:47: 48000000 INFO @ Sun, 02 Jun 2019 20:32:49: 54000000 INFO @ Sun, 02 Jun 2019 20:32:54: 45000000 INFO @ Sun, 02 Jun 2019 20:32:55: 49000000 INFO @ Sun, 02 Jun 2019 20:32:56: 55000000 INFO @ Sun, 02 Jun 2019 20:33:02: 46000000 INFO @ Sun, 02 Jun 2019 20:33:03: 56000000 INFO @ Sun, 02 Jun 2019 20:33:03: 50000000 INFO @ Sun, 02 Jun 2019 20:33:11: 57000000 INFO @ Sun, 02 Jun 2019 20:33:11: 47000000 INFO @ Sun, 02 Jun 2019 20:33:12: 51000000 INFO @ Sun, 02 Jun 2019 20:33:18: 58000000 INFO @ Sun, 02 Jun 2019 20:33:19: 48000000 INFO @ Sun, 02 Jun 2019 20:33:20: 52000000 INFO @ Sun, 02 Jun 2019 20:33:25: 59000000 INFO @ Sun, 02 Jun 2019 20:33:27: 49000000 INFO @ Sun, 02 Jun 2019 20:33:28: 53000000 INFO @ Sun, 02 Jun 2019 20:33:33: 60000000 INFO @ Sun, 02 Jun 2019 20:33:36: 50000000 INFO @ Sun, 02 Jun 2019 20:33:36: 54000000 INFO @ Sun, 02 Jun 2019 20:33:40: 61000000 INFO @ Sun, 02 Jun 2019 20:33:44: 51000000 INFO @ Sun, 02 Jun 2019 20:33:44: 55000000 INFO @ Sun, 02 Jun 2019 20:33:48: 62000000 INFO @ Sun, 02 Jun 2019 20:33:52: 52000000 INFO @ Sun, 02 Jun 2019 20:33:52: 56000000 INFO @ Sun, 02 Jun 2019 20:33:55: 63000000 INFO @ Sun, 02 Jun 2019 20:34:00: 53000000 INFO @ Sun, 02 Jun 2019 20:34:00: 57000000 INFO @ Sun, 02 Jun 2019 20:34:03: 64000000 INFO @ Sun, 02 Jun 2019 20:34:08: 54000000 INFO @ Sun, 02 Jun 2019 20:34:08: 58000000 INFO @ Sun, 02 Jun 2019 20:34:11: 65000000 INFO @ Sun, 02 Jun 2019 20:34:16: 55000000 INFO @ Sun, 02 Jun 2019 20:34:16: 59000000 INFO @ Sun, 02 Jun 2019 20:34:18: 66000000 INFO @ Sun, 02 Jun 2019 20:34:24: 56000000 INFO @ Sun, 02 Jun 2019 20:34:24: 60000000 INFO @ Sun, 02 Jun 2019 20:34:26: #1 tag size is determined as 76 bps INFO @ Sun, 02 Jun 2019 20:34:26: #1 tag size = 76 INFO @ Sun, 02 Jun 2019 20:34:26: #1 total tags in treatment: 31905597 INFO @ Sun, 02 Jun 2019 20:34:26: #1 user defined the maximum tags... INFO @ Sun, 02 Jun 2019 20:34:26: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 02 Jun 2019 20:34:26: #1 tags after filtering in treatment: 25333011 INFO @ Sun, 02 Jun 2019 20:34:26: #1 Redundant rate of treatment: 0.21 INFO @ Sun, 02 Jun 2019 20:34:26: #1 finished! INFO @ Sun, 02 Jun 2019 20:34:26: #2 Build Peak Model... INFO @ Sun, 02 Jun 2019 20:34:26: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 02 Jun 2019 20:34:28: #2 number of paired peaks: 173 WARNING @ Sun, 02 Jun 2019 20:34:28: Fewer paired peaks (173) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 173 pairs to build model! INFO @ Sun, 02 Jun 2019 20:34:28: start model_add_line... INFO @ Sun, 02 Jun 2019 20:34:29: start X-correlation... INFO @ Sun, 02 Jun 2019 20:34:29: end of X-cor INFO @ Sun, 02 Jun 2019 20:34:29: #2 finished! INFO @ Sun, 02 Jun 2019 20:34:29: #2 predicted fragment length is 191 bps INFO @ Sun, 02 Jun 2019 20:34:29: #2 alternative fragment length(s) may be 4,167,191 bps INFO @ Sun, 02 Jun 2019 20:34:29: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX3733159/SRX3733159.05_model.r INFO @ Sun, 02 Jun 2019 20:34:29: #3 Call peaks... INFO @ Sun, 02 Jun 2019 20:34:29: #3 Pre-compute pvalue-qvalue table... INFO @ Sun, 02 Jun 2019 20:34:32: 57000000 INFO @ Sun, 02 Jun 2019 20:34:33: 61000000 INFO @ Sun, 02 Jun 2019 20:34:40: 58000000 INFO @ Sun, 02 Jun 2019 20:34:41: 62000000 INFO @ Sun, 02 Jun 2019 20:34:48: 59000000 INFO @ Sun, 02 Jun 2019 20:34:50: 63000000 INFO @ Sun, 02 Jun 2019 20:34:56: 60000000 INFO @ Sun, 02 Jun 2019 20:34:59: 64000000 INFO @ Sun, 02 Jun 2019 20:35:04: 61000000 INFO @ Sun, 02 Jun 2019 20:35:08: 65000000 INFO @ Sun, 02 Jun 2019 20:35:13: 62000000 INFO @ Sun, 02 Jun 2019 20:35:16: 66000000 INFO @ Sun, 02 Jun 2019 20:35:22: 63000000 INFO @ Sun, 02 Jun 2019 20:35:24: #1 tag size is determined as 76 bps INFO @ Sun, 02 Jun 2019 20:35:24: #1 tag size = 76 INFO @ Sun, 02 Jun 2019 20:35:24: #1 total tags in treatment: 31905597 INFO @ Sun, 02 Jun 2019 20:35:24: #1 user defined the maximum tags... INFO @ Sun, 02 Jun 2019 20:35:24: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 02 Jun 2019 20:35:25: #1 tags after filtering in treatment: 25333011 INFO @ Sun, 02 Jun 2019 20:35:25: #1 Redundant rate of treatment: 0.21 INFO @ Sun, 02 Jun 2019 20:35:25: #1 finished! INFO @ Sun, 02 Jun 2019 20:35:25: #2 Build Peak Model... INFO @ Sun, 02 Jun 2019 20:35:25: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 02 Jun 2019 20:35:27: #2 number of paired peaks: 173 WARNING @ Sun, 02 Jun 2019 20:35:27: Fewer paired peaks (173) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 173 pairs to build model! INFO @ Sun, 02 Jun 2019 20:35:27: start model_add_line... INFO @ Sun, 02 Jun 2019 20:35:27: start X-correlation... INFO @ Sun, 02 Jun 2019 20:35:27: end of X-cor INFO @ Sun, 02 Jun 2019 20:35:27: #2 finished! INFO @ Sun, 02 Jun 2019 20:35:27: #2 predicted fragment length is 191 bps INFO @ Sun, 02 Jun 2019 20:35:27: #2 alternative fragment length(s) may be 4,167,191 bps INFO @ Sun, 02 Jun 2019 20:35:27: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX3733159/SRX3733159.10_model.r INFO @ Sun, 02 Jun 2019 20:35:27: #3 Call peaks... INFO @ Sun, 02 Jun 2019 20:35:27: #3 Pre-compute pvalue-qvalue table... INFO @ Sun, 02 Jun 2019 20:35:30: 64000000 INFO @ Sun, 02 Jun 2019 20:35:36: #3 Call peaks for each chromosome... INFO @ Sun, 02 Jun 2019 20:35:39: 65000000 INFO @ Sun, 02 Jun 2019 20:35:47: 66000000 INFO @ Sun, 02 Jun 2019 20:35:55: #1 tag size is determined as 76 bps INFO @ Sun, 02 Jun 2019 20:35:55: #1 tag size = 76 INFO @ Sun, 02 Jun 2019 20:35:55: #1 total tags in treatment: 31905597 INFO @ Sun, 02 Jun 2019 20:35:55: #1 user defined the maximum tags... INFO @ Sun, 02 Jun 2019 20:35:55: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 02 Jun 2019 20:35:56: #1 tags after filtering in treatment: 25333011 INFO @ Sun, 02 Jun 2019 20:35:56: #1 Redundant rate of treatment: 0.21 INFO @ Sun, 02 Jun 2019 20:35:56: #1 finished! INFO @ Sun, 02 Jun 2019 20:35:56: #2 Build Peak Model... INFO @ Sun, 02 Jun 2019 20:35:56: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 02 Jun 2019 20:35:58: #2 number of paired peaks: 173 WARNING @ Sun, 02 Jun 2019 20:35:58: Fewer paired peaks (173) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 173 pairs to build model! INFO @ Sun, 02 Jun 2019 20:35:58: start model_add_line... INFO @ Sun, 02 Jun 2019 20:35:58: start X-correlation... INFO @ Sun, 02 Jun 2019 20:35:58: end of X-cor INFO @ Sun, 02 Jun 2019 20:35:58: #2 finished! INFO @ Sun, 02 Jun 2019 20:35:58: #2 predicted fragment length is 191 bps INFO @ Sun, 02 Jun 2019 20:35:58: #2 alternative fragment length(s) may be 4,167,191 bps INFO @ Sun, 02 Jun 2019 20:35:58: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX3733159/SRX3733159.20_model.r INFO @ Sun, 02 Jun 2019 20:35:58: #3 Call peaks... INFO @ Sun, 02 Jun 2019 20:35:58: #3 Pre-compute pvalue-qvalue table... INFO @ Sun, 02 Jun 2019 20:36:03: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX3733159/SRX3733159.05_peaks.xls INFO @ Sun, 02 Jun 2019 20:36:03: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX3733159/SRX3733159.05_peaks.narrowPeak INFO @ Sun, 02 Jun 2019 20:36:03: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX3733159/SRX3733159.05_summits.bed INFO @ Sun, 02 Jun 2019 20:36:03: Done! pass1 - making usageList (7 chroms): 2 millis pass2 - checking and writing primary data (6103 records, 4 fields): 16 millis CompletedMACS2peakCalling INFO @ Sun, 02 Jun 2019 20:36:35: #3 Call peaks for each chromosome... INFO @ Sun, 02 Jun 2019 20:37:01: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX3733159/SRX3733159.10_peaks.xls INFO @ Sun, 02 Jun 2019 20:37:01: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX3733159/SRX3733159.10_peaks.narrowPeak INFO @ Sun, 02 Jun 2019 20:37:01: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX3733159/SRX3733159.10_summits.bed INFO @ Sun, 02 Jun 2019 20:37:01: Done! pass1 - making usageList (7 chroms): 2 millis pass2 - checking and writing primary data (3447 records, 4 fields): 8 millis CompletedMACS2peakCalling INFO @ Sun, 02 Jun 2019 20:37:06: #3 Call peaks for each chromosome... INFO @ Sun, 02 Jun 2019 20:37:32: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX3733159/SRX3733159.20_peaks.xls INFO @ Sun, 02 Jun 2019 20:37:32: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX3733159/SRX3733159.20_peaks.narrowPeak INFO @ Sun, 02 Jun 2019 20:37:32: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX3733159/SRX3733159.20_summits.bed INFO @ Sun, 02 Jun 2019 20:37:32: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (1501 records, 4 fields): 5 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。