Job ID = 6626338 SRX = SRX3008766 Genome = ce10 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... Read 60530886 spots for SRR5831448/SRR5831448.sra Written 60530886 spots for SRR5831448/SRR5831448.sra fastq に変換しました。 bowtie でマッピング中... Your job 6626612 ("srTce11") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:13:59 60530886 reads; of these: 60530886 (100.00%) were unpaired; of these: 573328 (0.95%) aligned 0 times 48957056 (80.88%) aligned exactly 1 time 11000502 (18.17%) aligned >1 times 99.05% overall alignment rate Time searching: 00:13:59 Overall time: 00:13:59 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 28 files... [bam_rmdupse_core] 13921105 / 59957558 = 0.2322 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 14 Jul 2020 07:23:04: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX3008766/SRX3008766.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX3008766/SRX3008766.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX3008766/SRX3008766.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX3008766/SRX3008766.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 14 Jul 2020 07:23:04: #1 read tag files... INFO @ Tue, 14 Jul 2020 07:23:04: #1 read treatment tags... INFO @ Tue, 14 Jul 2020 07:23:10: 1000000 INFO @ Tue, 14 Jul 2020 07:23:16: 2000000 INFO @ Tue, 14 Jul 2020 07:23:22: 3000000 INFO @ Tue, 14 Jul 2020 07:23:28: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 14 Jul 2020 07:23:34: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX3008766/SRX3008766.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX3008766/SRX3008766.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX3008766/SRX3008766.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX3008766/SRX3008766.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 14 Jul 2020 07:23:34: #1 read tag files... INFO @ Tue, 14 Jul 2020 07:23:34: #1 read treatment tags... INFO @ Tue, 14 Jul 2020 07:23:34: 5000000 INFO @ Tue, 14 Jul 2020 07:23:40: 1000000 INFO @ Tue, 14 Jul 2020 07:23:40: 6000000 INFO @ Tue, 14 Jul 2020 07:23:46: 2000000 INFO @ Tue, 14 Jul 2020 07:23:47: 7000000 INFO @ Tue, 14 Jul 2020 07:23:53: 3000000 INFO @ Tue, 14 Jul 2020 07:23:53: 8000000 INFO @ Tue, 14 Jul 2020 07:23:59: 4000000 INFO @ Tue, 14 Jul 2020 07:24:00: 9000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 14 Jul 2020 07:24:04: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX3008766/SRX3008766.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX3008766/SRX3008766.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX3008766/SRX3008766.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX3008766/SRX3008766.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 14 Jul 2020 07:24:04: #1 read tag files... INFO @ Tue, 14 Jul 2020 07:24:04: #1 read treatment tags... INFO @ Tue, 14 Jul 2020 07:24:06: 5000000 INFO @ Tue, 14 Jul 2020 07:24:06: 10000000 INFO @ Tue, 14 Jul 2020 07:24:10: 1000000 INFO @ Tue, 14 Jul 2020 07:24:12: 6000000 INFO @ Tue, 14 Jul 2020 07:24:13: 11000000 INFO @ Tue, 14 Jul 2020 07:24:17: 2000000 INFO @ Tue, 14 Jul 2020 07:24:19: 7000000 INFO @ Tue, 14 Jul 2020 07:24:19: 12000000 INFO @ Tue, 14 Jul 2020 07:24:23: 3000000 INFO @ Tue, 14 Jul 2020 07:24:25: 8000000 INFO @ Tue, 14 Jul 2020 07:24:26: 13000000 INFO @ Tue, 14 Jul 2020 07:24:30: 4000000 INFO @ Tue, 14 Jul 2020 07:24:32: 9000000 INFO @ Tue, 14 Jul 2020 07:24:32: 14000000 INFO @ Tue, 14 Jul 2020 07:24:36: 5000000 INFO @ Tue, 14 Jul 2020 07:24:38: 10000000 INFO @ Tue, 14 Jul 2020 07:24:39: 15000000 INFO @ Tue, 14 Jul 2020 07:24:43: 6000000 INFO @ Tue, 14 Jul 2020 07:24:45: 11000000 INFO @ Tue, 14 Jul 2020 07:24:45: 16000000 INFO @ Tue, 14 Jul 2020 07:24:49: 7000000 INFO @ Tue, 14 Jul 2020 07:24:51: 12000000 INFO @ Tue, 14 Jul 2020 07:24:52: 17000000 INFO @ Tue, 14 Jul 2020 07:24:56: 8000000 INFO @ Tue, 14 Jul 2020 07:24:58: 13000000 INFO @ Tue, 14 Jul 2020 07:24:58: 18000000 INFO @ Tue, 14 Jul 2020 07:25:03: 9000000 INFO @ Tue, 14 Jul 2020 07:25:05: 14000000 INFO @ Tue, 14 Jul 2020 07:25:05: 19000000 INFO @ Tue, 14 Jul 2020 07:25:10: 10000000 INFO @ Tue, 14 Jul 2020 07:25:12: 15000000 INFO @ Tue, 14 Jul 2020 07:25:12: 20000000 INFO @ Tue, 14 Jul 2020 07:25:17: 11000000 INFO @ Tue, 14 Jul 2020 07:25:18: 16000000 INFO @ Tue, 14 Jul 2020 07:25:19: 21000000 INFO @ Tue, 14 Jul 2020 07:25:24: 12000000 INFO @ Tue, 14 Jul 2020 07:25:25: 17000000 INFO @ Tue, 14 Jul 2020 07:25:26: 22000000 INFO @ Tue, 14 Jul 2020 07:25:30: 13000000 INFO @ Tue, 14 Jul 2020 07:25:32: 18000000 INFO @ Tue, 14 Jul 2020 07:25:33: 23000000 INFO @ Tue, 14 Jul 2020 07:25:37: 14000000 INFO @ Tue, 14 Jul 2020 07:25:39: 19000000 INFO @ Tue, 14 Jul 2020 07:25:40: 24000000 INFO @ Tue, 14 Jul 2020 07:25:44: 15000000 INFO @ Tue, 14 Jul 2020 07:25:46: 20000000 INFO @ Tue, 14 Jul 2020 07:25:47: 25000000 INFO @ Tue, 14 Jul 2020 07:25:51: 16000000 INFO @ Tue, 14 Jul 2020 07:25:52: 21000000 INFO @ Tue, 14 Jul 2020 07:25:54: 26000000 INFO @ Tue, 14 Jul 2020 07:25:57: 17000000 INFO @ Tue, 14 Jul 2020 07:25:59: 22000000 INFO @ Tue, 14 Jul 2020 07:26:01: 27000000 INFO @ Tue, 14 Jul 2020 07:26:04: 18000000 INFO @ Tue, 14 Jul 2020 07:26:06: 23000000 INFO @ Tue, 14 Jul 2020 07:26:08: 28000000 INFO @ Tue, 14 Jul 2020 07:26:11: 19000000 INFO @ Tue, 14 Jul 2020 07:26:12: 24000000 INFO @ Tue, 14 Jul 2020 07:26:15: 29000000 INFO @ Tue, 14 Jul 2020 07:26:17: 20000000 INFO @ Tue, 14 Jul 2020 07:26:19: 25000000 INFO @ Tue, 14 Jul 2020 07:26:22: 30000000 INFO @ Tue, 14 Jul 2020 07:26:24: 21000000 INFO @ Tue, 14 Jul 2020 07:26:26: 26000000 INFO @ Tue, 14 Jul 2020 07:26:28: 31000000 INFO @ Tue, 14 Jul 2020 07:26:30: 22000000 INFO @ Tue, 14 Jul 2020 07:26:33: 27000000 INFO @ Tue, 14 Jul 2020 07:26:35: 32000000 INFO @ Tue, 14 Jul 2020 07:26:37: 23000000 INFO @ Tue, 14 Jul 2020 07:26:40: 28000000 INFO @ Tue, 14 Jul 2020 07:26:42: 33000000 INFO @ Tue, 14 Jul 2020 07:26:44: 24000000 INFO @ Tue, 14 Jul 2020 07:26:47: 29000000 INFO @ Tue, 14 Jul 2020 07:26:49: 34000000 INFO @ Tue, 14 Jul 2020 07:26:51: 25000000 INFO @ Tue, 14 Jul 2020 07:26:54: 30000000 INFO @ Tue, 14 Jul 2020 07:26:56: 35000000 INFO @ Tue, 14 Jul 2020 07:26:58: 26000000 INFO @ Tue, 14 Jul 2020 07:27:01: 31000000 INFO @ Tue, 14 Jul 2020 07:27:03: 36000000 INFO @ Tue, 14 Jul 2020 07:27:05: 27000000 INFO @ Tue, 14 Jul 2020 07:27:08: 32000000 INFO @ Tue, 14 Jul 2020 07:27:10: 37000000 INFO @ Tue, 14 Jul 2020 07:27:12: 28000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 14 Jul 2020 07:27:15: 33000000 INFO @ Tue, 14 Jul 2020 07:27:17: 38000000 INFO @ Tue, 14 Jul 2020 07:27:19: 29000000 INFO @ Tue, 14 Jul 2020 07:27:22: 34000000 INFO @ Tue, 14 Jul 2020 07:27:24: 39000000 INFO @ Tue, 14 Jul 2020 07:27:26: 30000000 INFO @ Tue, 14 Jul 2020 07:27:29: 35000000 INFO @ Tue, 14 Jul 2020 07:27:31: 40000000 INFO @ Tue, 14 Jul 2020 07:27:33: 31000000 INFO @ Tue, 14 Jul 2020 07:27:36: 36000000 INFO @ Tue, 14 Jul 2020 07:27:38: 41000000 INFO @ Tue, 14 Jul 2020 07:27:39: 32000000 INFO @ Tue, 14 Jul 2020 07:27:43: 37000000 INFO @ Tue, 14 Jul 2020 07:27:45: 42000000 INFO @ Tue, 14 Jul 2020 07:27:46: 33000000 INFO @ Tue, 14 Jul 2020 07:27:50: 38000000 INFO @ Tue, 14 Jul 2020 07:27:52: 43000000 INFO @ Tue, 14 Jul 2020 07:27:54: 34000000 INFO @ Tue, 14 Jul 2020 07:27:57: 39000000 INFO @ Tue, 14 Jul 2020 07:27:59: 44000000 INFO @ Tue, 14 Jul 2020 07:28:01: 35000000 INFO @ Tue, 14 Jul 2020 07:28:04: 40000000 INFO @ Tue, 14 Jul 2020 07:28:06: 45000000 INFO @ Tue, 14 Jul 2020 07:28:08: 36000000 INFO @ Tue, 14 Jul 2020 07:28:11: 41000000 INFO @ Tue, 14 Jul 2020 07:28:13: 46000000 INFO @ Tue, 14 Jul 2020 07:28:14: #1 tag size is determined as 50 bps INFO @ Tue, 14 Jul 2020 07:28:14: #1 tag size = 50 INFO @ Tue, 14 Jul 2020 07:28:14: #1 total tags in treatment: 46036453 INFO @ Tue, 14 Jul 2020 07:28:14: #1 user defined the maximum tags... INFO @ Tue, 14 Jul 2020 07:28:14: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 14 Jul 2020 07:28:14: #1 tags after filtering in treatment: 46036453 INFO @ Tue, 14 Jul 2020 07:28:14: #1 Redundant rate of treatment: 0.00 INFO @ Tue, 14 Jul 2020 07:28:14: #1 finished! INFO @ Tue, 14 Jul 2020 07:28:14: #2 Build Peak Model... INFO @ Tue, 14 Jul 2020 07:28:14: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 14 Jul 2020 07:28:15: 37000000 INFO @ Tue, 14 Jul 2020 07:28:17: #2 number of paired peaks: 0 WARNING @ Tue, 14 Jul 2020 07:28:17: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Tue, 14 Jul 2020 07:28:17: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/ce10/SRX3008766/SRX3008766.05_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/ce10/SRX3008766/SRX3008766.05_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/ce10/SRX3008766/SRX3008766.05_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/ce10/SRX3008766/SRX3008766.05_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Tue, 14 Jul 2020 07:28:18: 42000000 INFO @ Tue, 14 Jul 2020 07:28:21: 38000000 BigWig に変換しました。 INFO @ Tue, 14 Jul 2020 07:28:24: 43000000 INFO @ Tue, 14 Jul 2020 07:28:28: 39000000 INFO @ Tue, 14 Jul 2020 07:28:31: 44000000 INFO @ Tue, 14 Jul 2020 07:28:35: 40000000 INFO @ Tue, 14 Jul 2020 07:28:38: 45000000 INFO @ Tue, 14 Jul 2020 07:28:42: 41000000 INFO @ Tue, 14 Jul 2020 07:28:45: 46000000 INFO @ Tue, 14 Jul 2020 07:28:45: #1 tag size is determined as 50 bps INFO @ Tue, 14 Jul 2020 07:28:45: #1 tag size = 50 INFO @ Tue, 14 Jul 2020 07:28:45: #1 total tags in treatment: 46036453 INFO @ Tue, 14 Jul 2020 07:28:45: #1 user defined the maximum tags... INFO @ Tue, 14 Jul 2020 07:28:45: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 14 Jul 2020 07:28:46: #1 tags after filtering in treatment: 46036453 INFO @ Tue, 14 Jul 2020 07:28:46: #1 Redundant rate of treatment: 0.00 INFO @ Tue, 14 Jul 2020 07:28:46: #1 finished! INFO @ Tue, 14 Jul 2020 07:28:46: #2 Build Peak Model... INFO @ Tue, 14 Jul 2020 07:28:46: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 14 Jul 2020 07:28:48: 42000000 INFO @ Tue, 14 Jul 2020 07:28:49: #2 number of paired peaks: 0 WARNING @ Tue, 14 Jul 2020 07:28:49: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Tue, 14 Jul 2020 07:28:49: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/ce10/SRX3008766/SRX3008766.10_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/ce10/SRX3008766/SRX3008766.10_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/ce10/SRX3008766/SRX3008766.10_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/ce10/SRX3008766/SRX3008766.10_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Tue, 14 Jul 2020 07:28:55: 43000000 INFO @ Tue, 14 Jul 2020 07:29:01: 44000000 INFO @ Tue, 14 Jul 2020 07:29:07: 45000000 INFO @ Tue, 14 Jul 2020 07:29:14: 46000000 INFO @ Tue, 14 Jul 2020 07:29:14: #1 tag size is determined as 50 bps INFO @ Tue, 14 Jul 2020 07:29:14: #1 tag size = 50 INFO @ Tue, 14 Jul 2020 07:29:14: #1 total tags in treatment: 46036453 INFO @ Tue, 14 Jul 2020 07:29:14: #1 user defined the maximum tags... INFO @ Tue, 14 Jul 2020 07:29:14: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 14 Jul 2020 07:29:15: #1 tags after filtering in treatment: 46036453 INFO @ Tue, 14 Jul 2020 07:29:15: #1 Redundant rate of treatment: 0.00 INFO @ Tue, 14 Jul 2020 07:29:15: #1 finished! INFO @ Tue, 14 Jul 2020 07:29:15: #2 Build Peak Model... INFO @ Tue, 14 Jul 2020 07:29:15: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 14 Jul 2020 07:29:18: #2 number of paired peaks: 0 WARNING @ Tue, 14 Jul 2020 07:29:18: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Tue, 14 Jul 2020 07:29:18: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/ce10/SRX3008766/SRX3008766.20_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/ce10/SRX3008766/SRX3008766.20_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/ce10/SRX3008766/SRX3008766.20_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/ce10/SRX3008766/SRX3008766.20_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling