Job ID = 1292014 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... spots read : 27,258,444 reads read : 54,516,888 reads written : 54,516,888 rm: cannot remove ‘[DSE]RR*’: No such file or directory rm: cannot remove ‘fastqDump_tmp*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:30:04 27258444 reads; of these: 27258444 (100.00%) were paired; of these: 1013996 (3.72%) aligned concordantly 0 times 22500200 (82.54%) aligned concordantly exactly 1 time 3744248 (13.74%) aligned concordantly >1 times ---- 1013996 pairs aligned concordantly 0 times; of these: 512879 (50.58%) aligned discordantly 1 time ---- 501117 pairs aligned 0 times concordantly or discordantly; of these: 1002234 mates make up the pairs; of these: 627137 (62.57%) aligned 0 times 221794 (22.13%) aligned exactly 1 time 153303 (15.30%) aligned >1 times 98.85% overall alignment rate Time searching: 00:30:04 Overall time: 00:30:04 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 24 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 424993 / 26740044 = 0.0159 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Sun, 02 Jun 2019 18:13:38: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX2978710/SRX2978710.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX2978710/SRX2978710.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX2978710/SRX2978710.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX2978710/SRX2978710.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 02 Jun 2019 18:13:38: #1 read tag files... INFO @ Sun, 02 Jun 2019 18:13:38: #1 read treatment tags... INFO @ Sun, 02 Jun 2019 18:13:38: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX2978710/SRX2978710.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX2978710/SRX2978710.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX2978710/SRX2978710.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX2978710/SRX2978710.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 02 Jun 2019 18:13:38: #1 read tag files... INFO @ Sun, 02 Jun 2019 18:13:38: #1 read treatment tags... INFO @ Sun, 02 Jun 2019 18:13:39: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX2978710/SRX2978710.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX2978710/SRX2978710.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX2978710/SRX2978710.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX2978710/SRX2978710.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 02 Jun 2019 18:13:39: #1 read tag files... INFO @ Sun, 02 Jun 2019 18:13:39: #1 read treatment tags... INFO @ Sun, 02 Jun 2019 18:13:49: 1000000 INFO @ Sun, 02 Jun 2019 18:13:49: 1000000 INFO @ Sun, 02 Jun 2019 18:13:49: 1000000 INFO @ Sun, 02 Jun 2019 18:13:58: 2000000 INFO @ Sun, 02 Jun 2019 18:13:59: 2000000 INFO @ Sun, 02 Jun 2019 18:13:59: 2000000 INFO @ Sun, 02 Jun 2019 18:14:06: 3000000 INFO @ Sun, 02 Jun 2019 18:14:08: 3000000 INFO @ Sun, 02 Jun 2019 18:14:08: 3000000 INFO @ Sun, 02 Jun 2019 18:14:13: 4000000 INFO @ Sun, 02 Jun 2019 18:14:17: 4000000 INFO @ Sun, 02 Jun 2019 18:14:18: 4000000 INFO @ Sun, 02 Jun 2019 18:14:21: 5000000 INFO @ Sun, 02 Jun 2019 18:14:27: 5000000 INFO @ Sun, 02 Jun 2019 18:14:27: 5000000 INFO @ Sun, 02 Jun 2019 18:14:28: 6000000 INFO @ Sun, 02 Jun 2019 18:14:35: 7000000 INFO @ Sun, 02 Jun 2019 18:14:36: 6000000 INFO @ Sun, 02 Jun 2019 18:14:37: 6000000 INFO @ Sun, 02 Jun 2019 18:14:43: 8000000 INFO @ Sun, 02 Jun 2019 18:14:46: 7000000 INFO @ Sun, 02 Jun 2019 18:14:47: 7000000 INFO @ Sun, 02 Jun 2019 18:14:50: 9000000 INFO @ Sun, 02 Jun 2019 18:14:55: 8000000 INFO @ Sun, 02 Jun 2019 18:14:56: 8000000 INFO @ Sun, 02 Jun 2019 18:14:57: 10000000 INFO @ Sun, 02 Jun 2019 18:15:05: 11000000 INFO @ Sun, 02 Jun 2019 18:15:05: 9000000 INFO @ Sun, 02 Jun 2019 18:15:06: 9000000 INFO @ Sun, 02 Jun 2019 18:15:12: 12000000 INFO @ Sun, 02 Jun 2019 18:15:14: 10000000 INFO @ Sun, 02 Jun 2019 18:15:15: 10000000 INFO @ Sun, 02 Jun 2019 18:15:19: 13000000 INFO @ Sun, 02 Jun 2019 18:15:24: 11000000 INFO @ Sun, 02 Jun 2019 18:15:25: 11000000 INFO @ Sun, 02 Jun 2019 18:15:27: 14000000 INFO @ Sun, 02 Jun 2019 18:15:34: 12000000 INFO @ Sun, 02 Jun 2019 18:15:34: 15000000 INFO @ Sun, 02 Jun 2019 18:15:34: 12000000 INFO @ Sun, 02 Jun 2019 18:15:41: 16000000 INFO @ Sun, 02 Jun 2019 18:15:43: 13000000 INFO @ Sun, 02 Jun 2019 18:15:44: 13000000 INFO @ Sun, 02 Jun 2019 18:15:48: 17000000 INFO @ Sun, 02 Jun 2019 18:15:52: 14000000 INFO @ Sun, 02 Jun 2019 18:15:53: 14000000 INFO @ Sun, 02 Jun 2019 18:15:56: 18000000 INFO @ Sun, 02 Jun 2019 18:16:02: 15000000 INFO @ Sun, 02 Jun 2019 18:16:02: 15000000 INFO @ Sun, 02 Jun 2019 18:16:03: 19000000 INFO @ Sun, 02 Jun 2019 18:16:10: 20000000 INFO @ Sun, 02 Jun 2019 18:16:11: 16000000 INFO @ Sun, 02 Jun 2019 18:16:12: 16000000 INFO @ Sun, 02 Jun 2019 18:16:18: 21000000 INFO @ Sun, 02 Jun 2019 18:16:21: 17000000 INFO @ Sun, 02 Jun 2019 18:16:21: 17000000 INFO @ Sun, 02 Jun 2019 18:16:25: 22000000 INFO @ Sun, 02 Jun 2019 18:16:30: 18000000 INFO @ Sun, 02 Jun 2019 18:16:31: 18000000 INFO @ Sun, 02 Jun 2019 18:16:32: 23000000 INFO @ Sun, 02 Jun 2019 18:16:39: 19000000 INFO @ Sun, 02 Jun 2019 18:16:40: 24000000 INFO @ Sun, 02 Jun 2019 18:16:40: 19000000 INFO @ Sun, 02 Jun 2019 18:16:49: 20000000 INFO @ Sun, 02 Jun 2019 18:16:50: 20000000 INFO @ Sun, 02 Jun 2019 18:16:50: 25000000 INFO @ Sun, 02 Jun 2019 18:16:59: 21000000 INFO @ Sun, 02 Jun 2019 18:16:59: 21000000 INFO @ Sun, 02 Jun 2019 18:17:00: 26000000 INFO @ Sun, 02 Jun 2019 18:17:08: 22000000 INFO @ Sun, 02 Jun 2019 18:17:09: 22000000 INFO @ Sun, 02 Jun 2019 18:17:11: 27000000 INFO @ Sun, 02 Jun 2019 18:17:18: 23000000 INFO @ Sun, 02 Jun 2019 18:17:19: 23000000 INFO @ Sun, 02 Jun 2019 18:17:21: 28000000 INFO @ Sun, 02 Jun 2019 18:17:28: 24000000 INFO @ Sun, 02 Jun 2019 18:17:28: 24000000 INFO @ Sun, 02 Jun 2019 18:17:32: 29000000 INFO @ Sun, 02 Jun 2019 18:17:37: 25000000 INFO @ Sun, 02 Jun 2019 18:17:38: 25000000 INFO @ Sun, 02 Jun 2019 18:17:42: 30000000 INFO @ Sun, 02 Jun 2019 18:17:47: 26000000 INFO @ Sun, 02 Jun 2019 18:17:48: 26000000 INFO @ Sun, 02 Jun 2019 18:17:52: 31000000 INFO @ Sun, 02 Jun 2019 18:17:57: 27000000 INFO @ Sun, 02 Jun 2019 18:17:57: 27000000 INFO @ Sun, 02 Jun 2019 18:18:03: 32000000 INFO @ Sun, 02 Jun 2019 18:18:06: 28000000 INFO @ Sun, 02 Jun 2019 18:18:07: 28000000 INFO @ Sun, 02 Jun 2019 18:18:13: 33000000 INFO @ Sun, 02 Jun 2019 18:18:16: 29000000 INFO @ Sun, 02 Jun 2019 18:18:17: 29000000 INFO @ Sun, 02 Jun 2019 18:18:24: 34000000 INFO @ Sun, 02 Jun 2019 18:18:26: 30000000 INFO @ Sun, 02 Jun 2019 18:18:26: 30000000 INFO @ Sun, 02 Jun 2019 18:18:34: 35000000 INFO @ Sun, 02 Jun 2019 18:18:35: 31000000 INFO @ Sun, 02 Jun 2019 18:18:36: 31000000 INFO @ Sun, 02 Jun 2019 18:18:44: 36000000 INFO @ Sun, 02 Jun 2019 18:18:45: 32000000 INFO @ Sun, 02 Jun 2019 18:18:46: 32000000 INFO @ Sun, 02 Jun 2019 18:18:54: 33000000 INFO @ Sun, 02 Jun 2019 18:18:55: 37000000 INFO @ Sun, 02 Jun 2019 18:18:55: 33000000 INFO @ Sun, 02 Jun 2019 18:19:04: 34000000 INFO @ Sun, 02 Jun 2019 18:19:05: 34000000 INFO @ Sun, 02 Jun 2019 18:19:05: 38000000 INFO @ Sun, 02 Jun 2019 18:19:14: 35000000 INFO @ Sun, 02 Jun 2019 18:19:14: 35000000 INFO @ Sun, 02 Jun 2019 18:19:15: 39000000 INFO @ Sun, 02 Jun 2019 18:19:23: 36000000 INFO @ Sun, 02 Jun 2019 18:19:24: 36000000 INFO @ Sun, 02 Jun 2019 18:19:26: 40000000 INFO @ Sun, 02 Jun 2019 18:19:33: 37000000 INFO @ Sun, 02 Jun 2019 18:19:33: 37000000 INFO @ Sun, 02 Jun 2019 18:19:36: 41000000 INFO @ Sun, 02 Jun 2019 18:19:42: 38000000 INFO @ Sun, 02 Jun 2019 18:19:43: 38000000 INFO @ Sun, 02 Jun 2019 18:19:46: 42000000 INFO @ Sun, 02 Jun 2019 18:19:52: 39000000 INFO @ Sun, 02 Jun 2019 18:19:53: 39000000 INFO @ Sun, 02 Jun 2019 18:19:57: 43000000 INFO @ Sun, 02 Jun 2019 18:20:01: 40000000 INFO @ Sun, 02 Jun 2019 18:20:02: 40000000 INFO @ Sun, 02 Jun 2019 18:20:07: 44000000 INFO @ Sun, 02 Jun 2019 18:20:11: 41000000 INFO @ Sun, 02 Jun 2019 18:20:12: 41000000 INFO @ Sun, 02 Jun 2019 18:20:17: 45000000 INFO @ Sun, 02 Jun 2019 18:20:20: 42000000 INFO @ Sun, 02 Jun 2019 18:20:21: 42000000 INFO @ Sun, 02 Jun 2019 18:20:28: 46000000 INFO @ Sun, 02 Jun 2019 18:20:30: 43000000 INFO @ Sun, 02 Jun 2019 18:20:31: 43000000 INFO @ Sun, 02 Jun 2019 18:20:38: 47000000 INFO @ Sun, 02 Jun 2019 18:20:40: 44000000 INFO @ Sun, 02 Jun 2019 18:20:40: 44000000 INFO @ Sun, 02 Jun 2019 18:20:49: 48000000 INFO @ Sun, 02 Jun 2019 18:20:49: 45000000 INFO @ Sun, 02 Jun 2019 18:20:50: 45000000 INFO @ Sun, 02 Jun 2019 18:20:59: 46000000 INFO @ Sun, 02 Jun 2019 18:20:59: 49000000 INFO @ Sun, 02 Jun 2019 18:20:59: 46000000 INFO @ Sun, 02 Jun 2019 18:21:08: 47000000 INFO @ Sun, 02 Jun 2019 18:21:09: 47000000 INFO @ Sun, 02 Jun 2019 18:21:10: 50000000 INFO @ Sun, 02 Jun 2019 18:21:18: 48000000 INFO @ Sun, 02 Jun 2019 18:21:19: 48000000 INFO @ Sun, 02 Jun 2019 18:21:20: 51000000 INFO @ Sun, 02 Jun 2019 18:21:28: 49000000 INFO @ Sun, 02 Jun 2019 18:21:29: 49000000 INFO @ Sun, 02 Jun 2019 18:21:31: 52000000 INFO @ Sun, 02 Jun 2019 18:21:38: 50000000 INFO @ Sun, 02 Jun 2019 18:21:39: 50000000 INFO @ Sun, 02 Jun 2019 18:21:41: 53000000 INFO @ Sun, 02 Jun 2019 18:21:41: #1 tag size is determined as 50 bps INFO @ Sun, 02 Jun 2019 18:21:41: #1 tag size = 50 INFO @ Sun, 02 Jun 2019 18:21:41: #1 total tags in treatment: 25822552 INFO @ Sun, 02 Jun 2019 18:21:41: #1 user defined the maximum tags... INFO @ Sun, 02 Jun 2019 18:21:41: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 02 Jun 2019 18:21:42: #1 tags after filtering in treatment: 22752377 INFO @ Sun, 02 Jun 2019 18:21:42: #1 Redundant rate of treatment: 0.12 INFO @ Sun, 02 Jun 2019 18:21:42: #1 finished! INFO @ Sun, 02 Jun 2019 18:21:42: #2 Build Peak Model... INFO @ Sun, 02 Jun 2019 18:21:42: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 02 Jun 2019 18:21:44: #2 number of paired peaks: 192 WARNING @ Sun, 02 Jun 2019 18:21:44: Fewer paired peaks (192) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 192 pairs to build model! INFO @ Sun, 02 Jun 2019 18:21:44: start model_add_line... INFO @ Sun, 02 Jun 2019 18:21:44: start X-correlation... INFO @ Sun, 02 Jun 2019 18:21:44: end of X-cor INFO @ Sun, 02 Jun 2019 18:21:44: #2 finished! INFO @ Sun, 02 Jun 2019 18:21:44: #2 predicted fragment length is 61 bps INFO @ Sun, 02 Jun 2019 18:21:44: #2 alternative fragment length(s) may be 3,61,120 bps INFO @ Sun, 02 Jun 2019 18:21:44: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX2978710/SRX2978710.05_model.r WARNING @ Sun, 02 Jun 2019 18:21:44: #2 Since the d (61) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sun, 02 Jun 2019 18:21:44: #2 You may need to consider one of the other alternative d(s): 3,61,120 WARNING @ Sun, 02 Jun 2019 18:21:44: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sun, 02 Jun 2019 18:21:44: #3 Call peaks... INFO @ Sun, 02 Jun 2019 18:21:44: #3 Pre-compute pvalue-qvalue table... INFO @ Sun, 02 Jun 2019 18:21:48: 51000000 INFO @ Sun, 02 Jun 2019 18:21:48: 51000000 INFO @ Sun, 02 Jun 2019 18:21:57: 52000000 INFO @ Sun, 02 Jun 2019 18:21:58: 52000000 INFO @ Sun, 02 Jun 2019 18:22:06: 53000000 INFO @ Sun, 02 Jun 2019 18:22:06: 53000000 INFO @ Sun, 02 Jun 2019 18:22:06: #1 tag size is determined as 50 bps INFO @ Sun, 02 Jun 2019 18:22:06: #1 tag size = 50 INFO @ Sun, 02 Jun 2019 18:22:06: #1 total tags in treatment: 25822552 INFO @ Sun, 02 Jun 2019 18:22:06: #1 user defined the maximum tags... INFO @ Sun, 02 Jun 2019 18:22:06: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 02 Jun 2019 18:22:07: #1 tag size is determined as 50 bps INFO @ Sun, 02 Jun 2019 18:22:07: #1 tag size = 50 INFO @ Sun, 02 Jun 2019 18:22:07: #1 total tags in treatment: 25822552 INFO @ Sun, 02 Jun 2019 18:22:07: #1 user defined the maximum tags... INFO @ Sun, 02 Jun 2019 18:22:07: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 02 Jun 2019 18:22:07: #1 tags after filtering in treatment: 22752377 INFO @ Sun, 02 Jun 2019 18:22:07: #1 Redundant rate of treatment: 0.12 INFO @ Sun, 02 Jun 2019 18:22:07: #1 finished! INFO @ Sun, 02 Jun 2019 18:22:07: #2 Build Peak Model... INFO @ Sun, 02 Jun 2019 18:22:07: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 02 Jun 2019 18:22:08: #1 tags after filtering in treatment: 22752377 INFO @ Sun, 02 Jun 2019 18:22:08: #1 Redundant rate of treatment: 0.12 INFO @ Sun, 02 Jun 2019 18:22:08: #1 finished! INFO @ Sun, 02 Jun 2019 18:22:08: #2 Build Peak Model... INFO @ Sun, 02 Jun 2019 18:22:08: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 02 Jun 2019 18:22:09: #2 number of paired peaks: 192 WARNING @ Sun, 02 Jun 2019 18:22:09: Fewer paired peaks (192) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 192 pairs to build model! INFO @ Sun, 02 Jun 2019 18:22:09: start model_add_line... INFO @ Sun, 02 Jun 2019 18:22:09: start X-correlation... INFO @ Sun, 02 Jun 2019 18:22:09: end of X-cor INFO @ Sun, 02 Jun 2019 18:22:09: #2 finished! INFO @ Sun, 02 Jun 2019 18:22:09: #2 predicted fragment length is 61 bps INFO @ Sun, 02 Jun 2019 18:22:09: #2 alternative fragment length(s) may be 3,61,120 bps INFO @ Sun, 02 Jun 2019 18:22:09: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX2978710/SRX2978710.20_model.r WARNING @ Sun, 02 Jun 2019 18:22:09: #2 Since the d (61) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sun, 02 Jun 2019 18:22:09: #2 You may need to consider one of the other alternative d(s): 3,61,120 WARNING @ Sun, 02 Jun 2019 18:22:09: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sun, 02 Jun 2019 18:22:09: #3 Call peaks... INFO @ Sun, 02 Jun 2019 18:22:09: #3 Pre-compute pvalue-qvalue table... INFO @ Sun, 02 Jun 2019 18:22:09: #2 number of paired peaks: 192 WARNING @ Sun, 02 Jun 2019 18:22:09: Fewer paired peaks (192) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 192 pairs to build model! INFO @ Sun, 02 Jun 2019 18:22:09: start model_add_line... INFO @ Sun, 02 Jun 2019 18:22:10: start X-correlation... INFO @ Sun, 02 Jun 2019 18:22:10: end of X-cor INFO @ Sun, 02 Jun 2019 18:22:10: #2 finished! INFO @ Sun, 02 Jun 2019 18:22:10: #2 predicted fragment length is 61 bps INFO @ Sun, 02 Jun 2019 18:22:10: #2 alternative fragment length(s) may be 3,61,120 bps INFO @ Sun, 02 Jun 2019 18:22:10: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX2978710/SRX2978710.10_model.r WARNING @ Sun, 02 Jun 2019 18:22:10: #2 Since the d (61) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sun, 02 Jun 2019 18:22:10: #2 You may need to consider one of the other alternative d(s): 3,61,120 WARNING @ Sun, 02 Jun 2019 18:22:10: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sun, 02 Jun 2019 18:22:10: #3 Call peaks... INFO @ Sun, 02 Jun 2019 18:22:10: #3 Pre-compute pvalue-qvalue table... INFO @ Sun, 02 Jun 2019 18:22:34: #3 Call peaks for each chromosome... INFO @ Sun, 02 Jun 2019 18:22:56: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX2978710/SRX2978710.05_peaks.xls INFO @ Sun, 02 Jun 2019 18:22:56: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX2978710/SRX2978710.05_peaks.narrowPeak INFO @ Sun, 02 Jun 2019 18:22:56: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX2978710/SRX2978710.05_summits.bed INFO @ Sun, 02 Jun 2019 18:22:56: Done! pass1 - making usageList (7 chroms): 1 millis pass2 - checking and writing primary data (628 records, 4 fields): 4 millis CompletedMACS2peakCalling INFO @ Sun, 02 Jun 2019 18:22:59: #3 Call peaks for each chromosome... INFO @ Sun, 02 Jun 2019 18:22:59: #3 Call peaks for each chromosome... INFO @ Sun, 02 Jun 2019 18:23:21: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX2978710/SRX2978710.20_peaks.xls INFO @ Sun, 02 Jun 2019 18:23:21: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX2978710/SRX2978710.20_peaks.narrowPeak INFO @ Sun, 02 Jun 2019 18:23:21: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX2978710/SRX2978710.20_summits.bed INFO @ Sun, 02 Jun 2019 18:23:21: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (178 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Sun, 02 Jun 2019 18:23:22: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX2978710/SRX2978710.10_peaks.xls INFO @ Sun, 02 Jun 2019 18:23:22: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX2978710/SRX2978710.10_peaks.narrowPeak INFO @ Sun, 02 Jun 2019 18:23:22: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX2978710/SRX2978710.10_summits.bed INFO @ Sun, 02 Jun 2019 18:23:22: Done! pass1 - making usageList (6 chroms): 1 millis pass2 - checking and writing primary data (412 records, 4 fields): 3 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。