Job ID = 11170816 sra ファイルのダウンロード中... Completed: 1545868K bytes transferred in 192 seconds (65724K bits/sec), in 1 file. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Read 54119838 spots for /home/okishinya/chipatlas/results/ce10/SRX2973381/SRR5786988.sra Written 54119838 spots for /home/okishinya/chipatlas/results/ce10/SRX2973381/SRR5786988.sra rm: cannot remove `[DSE]RX*': そのようなファイルやディレクトリはありません rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:22:02 54119838 reads; of these: 54119838 (100.00%) were unpaired; of these: 1596858 (2.95%) aligned 0 times 44662535 (82.53%) aligned exactly 1 time 7860445 (14.52%) aligned >1 times 97.05% overall alignment rate Time searching: 00:22:02 Overall time: 00:22:02 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 24 files... [bam_rmdupse_core] 13339822 / 52522980 = 0.2540 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Sat, 08 Sep 2018 12:06:23: # Command line: callpeak -t SRX2973381.bam -f BAM -g ce -n SRX2973381.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX2973381.20 # format = BAM # ChIP-seq file = ['SRX2973381.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 08 Sep 2018 12:06:23: # Command line: callpeak -t SRX2973381.bam -f BAM -g ce -n SRX2973381.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX2973381.05 # format = BAM # ChIP-seq file = ['SRX2973381.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 08 Sep 2018 12:06:23: # Command line: callpeak -t SRX2973381.bam -f BAM -g ce -n SRX2973381.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX2973381.10 # format = BAM # ChIP-seq file = ['SRX2973381.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 08 Sep 2018 12:06:23: #1 read tag files... INFO @ Sat, 08 Sep 2018 12:06:23: #1 read tag files... INFO @ Sat, 08 Sep 2018 12:06:23: #1 read tag files... INFO @ Sat, 08 Sep 2018 12:06:23: #1 read treatment tags... INFO @ Sat, 08 Sep 2018 12:06:23: #1 read treatment tags... INFO @ Sat, 08 Sep 2018 12:06:23: #1 read treatment tags... INFO @ Sat, 08 Sep 2018 12:06:29: 1000000 INFO @ Sat, 08 Sep 2018 12:06:29: 1000000 INFO @ Sat, 08 Sep 2018 12:06:29: 1000000 INFO @ Sat, 08 Sep 2018 12:06:35: 2000000 INFO @ Sat, 08 Sep 2018 12:06:36: 2000000 INFO @ Sat, 08 Sep 2018 12:06:36: 2000000 INFO @ Sat, 08 Sep 2018 12:06:41: 3000000 INFO @ Sat, 08 Sep 2018 12:06:43: 3000000 INFO @ Sat, 08 Sep 2018 12:06:43: 3000000 INFO @ Sat, 08 Sep 2018 12:06:47: 4000000 INFO @ Sat, 08 Sep 2018 12:06:49: 4000000 INFO @ Sat, 08 Sep 2018 12:06:49: 4000000 INFO @ Sat, 08 Sep 2018 12:06:53: 5000000 INFO @ Sat, 08 Sep 2018 12:06:56: 5000000 INFO @ Sat, 08 Sep 2018 12:06:56: 5000000 INFO @ Sat, 08 Sep 2018 12:06:59: 6000000 INFO @ Sat, 08 Sep 2018 12:07:03: 6000000 INFO @ Sat, 08 Sep 2018 12:07:03: 6000000 INFO @ Sat, 08 Sep 2018 12:07:05: 7000000 INFO @ Sat, 08 Sep 2018 12:07:10: 7000000 INFO @ Sat, 08 Sep 2018 12:07:10: 7000000 INFO @ Sat, 08 Sep 2018 12:07:11: 8000000 INFO @ Sat, 08 Sep 2018 12:07:16: 8000000 INFO @ Sat, 08 Sep 2018 12:07:16: 8000000 INFO @ Sat, 08 Sep 2018 12:07:17: 9000000 INFO @ Sat, 08 Sep 2018 12:07:23: 9000000 INFO @ Sat, 08 Sep 2018 12:07:23: 9000000 INFO @ Sat, 08 Sep 2018 12:07:23: 10000000 INFO @ Sat, 08 Sep 2018 12:07:29: 11000000 INFO @ Sat, 08 Sep 2018 12:07:30: 10000000 INFO @ Sat, 08 Sep 2018 12:07:30: 10000000 INFO @ Sat, 08 Sep 2018 12:07:35: 12000000 INFO @ Sat, 08 Sep 2018 12:07:36: 11000000 INFO @ Sat, 08 Sep 2018 12:07:36: 11000000 INFO @ Sat, 08 Sep 2018 12:07:42: 13000000 INFO @ Sat, 08 Sep 2018 12:07:43: 12000000 INFO @ Sat, 08 Sep 2018 12:07:43: 12000000 INFO @ Sat, 08 Sep 2018 12:07:48: 14000000 INFO @ Sat, 08 Sep 2018 12:07:50: 13000000 INFO @ Sat, 08 Sep 2018 12:07:50: 13000000 INFO @ Sat, 08 Sep 2018 12:07:54: 15000000 INFO @ Sat, 08 Sep 2018 12:07:57: 14000000 INFO @ Sat, 08 Sep 2018 12:07:57: 14000000 INFO @ Sat, 08 Sep 2018 12:08:00: 16000000 INFO @ Sat, 08 Sep 2018 12:08:04: 15000000 INFO @ Sat, 08 Sep 2018 12:08:04: 15000000 INFO @ Sat, 08 Sep 2018 12:08:06: 17000000 INFO @ Sat, 08 Sep 2018 12:08:10: 16000000 INFO @ Sat, 08 Sep 2018 12:08:10: 16000000 INFO @ Sat, 08 Sep 2018 12:08:12: 18000000 INFO @ Sat, 08 Sep 2018 12:08:17: 17000000 INFO @ Sat, 08 Sep 2018 12:08:17: 17000000 INFO @ Sat, 08 Sep 2018 12:08:18: 19000000 INFO @ Sat, 08 Sep 2018 12:08:24: 20000000 INFO @ Sat, 08 Sep 2018 12:08:24: 18000000 INFO @ Sat, 08 Sep 2018 12:08:24: 18000000 INFO @ Sat, 08 Sep 2018 12:08:30: 21000000 INFO @ Sat, 08 Sep 2018 12:08:31: 19000000 INFO @ Sat, 08 Sep 2018 12:08:31: 19000000 INFO @ Sat, 08 Sep 2018 12:08:36: 22000000 INFO @ Sat, 08 Sep 2018 12:08:38: 20000000 INFO @ Sat, 08 Sep 2018 12:08:38: 20000000 INFO @ Sat, 08 Sep 2018 12:08:42: 23000000 INFO @ Sat, 08 Sep 2018 12:08:44: 21000000 INFO @ Sat, 08 Sep 2018 12:08:44: 21000000 INFO @ Sat, 08 Sep 2018 12:08:48: 24000000 INFO @ Sat, 08 Sep 2018 12:08:51: 22000000 INFO @ Sat, 08 Sep 2018 12:08:51: 22000000 INFO @ Sat, 08 Sep 2018 12:08:54: 25000000 INFO @ Sat, 08 Sep 2018 12:08:58: 23000000 INFO @ Sat, 08 Sep 2018 12:08:58: 23000000 INFO @ Sat, 08 Sep 2018 12:09:00: 26000000 INFO @ Sat, 08 Sep 2018 12:09:05: 24000000 INFO @ Sat, 08 Sep 2018 12:09:05: 24000000 INFO @ Sat, 08 Sep 2018 12:09:06: 27000000 INFO @ Sat, 08 Sep 2018 12:09:12: 25000000 INFO @ Sat, 08 Sep 2018 12:09:12: 25000000 INFO @ Sat, 08 Sep 2018 12:09:12: 28000000 INFO @ Sat, 08 Sep 2018 12:09:18: 29000000 INFO @ Sat, 08 Sep 2018 12:09:18: 26000000 INFO @ Sat, 08 Sep 2018 12:09:18: 26000000 INFO @ Sat, 08 Sep 2018 12:09:24: 30000000 INFO @ Sat, 08 Sep 2018 12:09:25: 27000000 INFO @ Sat, 08 Sep 2018 12:09:25: 27000000 INFO @ Sat, 08 Sep 2018 12:09:30: 31000000 INFO @ Sat, 08 Sep 2018 12:09:32: 28000000 INFO @ Sat, 08 Sep 2018 12:09:32: 28000000 INFO @ Sat, 08 Sep 2018 12:09:36: 32000000 INFO @ Sat, 08 Sep 2018 12:09:39: 29000000 INFO @ Sat, 08 Sep 2018 12:09:39: 29000000 INFO @ Sat, 08 Sep 2018 12:09:42: 33000000 INFO @ Sat, 08 Sep 2018 12:09:45: 30000000 INFO @ Sat, 08 Sep 2018 12:09:45: 30000000 INFO @ Sat, 08 Sep 2018 12:09:48: 34000000 INFO @ Sat, 08 Sep 2018 12:09:52: 31000000 INFO @ Sat, 08 Sep 2018 12:09:52: 31000000 INFO @ Sat, 08 Sep 2018 12:09:54: 35000000 INFO @ Sat, 08 Sep 2018 12:09:59: 32000000 INFO @ Sat, 08 Sep 2018 12:09:59: 32000000 INFO @ Sat, 08 Sep 2018 12:10:00: 36000000 INFO @ Sat, 08 Sep 2018 12:10:06: 33000000 INFO @ Sat, 08 Sep 2018 12:10:06: 33000000 INFO @ Sat, 08 Sep 2018 12:10:06: 37000000 INFO @ Sat, 08 Sep 2018 12:10:12: 38000000 INFO @ Sat, 08 Sep 2018 12:10:12: 34000000 INFO @ Sat, 08 Sep 2018 12:10:12: 34000000 INFO @ Sat, 08 Sep 2018 12:10:18: 39000000 INFO @ Sat, 08 Sep 2018 12:10:19: 35000000 INFO @ Sat, 08 Sep 2018 12:10:19: 35000000 INFO @ Sat, 08 Sep 2018 12:10:20: #1 tag size is determined as 76 bps INFO @ Sat, 08 Sep 2018 12:10:20: #1 tag size = 76 INFO @ Sat, 08 Sep 2018 12:10:20: #1 total tags in treatment: 39183158 INFO @ Sat, 08 Sep 2018 12:10:20: #1 user defined the maximum tags... INFO @ Sat, 08 Sep 2018 12:10:20: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 08 Sep 2018 12:10:21: #1 tags after filtering in treatment: 39183158 INFO @ Sat, 08 Sep 2018 12:10:21: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 08 Sep 2018 12:10:21: #1 finished! INFO @ Sat, 08 Sep 2018 12:10:21: #2 Build Peak Model... INFO @ Sat, 08 Sep 2018 12:10:21: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 08 Sep 2018 12:10:23: #2 number of paired peaks: 0 WARNING @ Sat, 08 Sep 2018 12:10:23: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 08 Sep 2018 12:10:23: Process for pairing-model is terminated! cat: SRX2973381.20_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX2973381.20_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2973381.20_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2973381.20_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Sat, 08 Sep 2018 12:10:26: 36000000 INFO @ Sat, 08 Sep 2018 12:10:26: 36000000 INFO @ Sat, 08 Sep 2018 12:10:32: 37000000 INFO @ Sat, 08 Sep 2018 12:10:32: 37000000 INFO @ Sat, 08 Sep 2018 12:10:39: 38000000 INFO @ Sat, 08 Sep 2018 12:10:39: 38000000 INFO @ Sat, 08 Sep 2018 12:10:45: 39000000 INFO @ Sat, 08 Sep 2018 12:10:45: 39000000 INFO @ Sat, 08 Sep 2018 12:10:47: #1 tag size is determined as 76 bps INFO @ Sat, 08 Sep 2018 12:10:47: #1 tag size is determined as 76 bps INFO @ Sat, 08 Sep 2018 12:10:47: #1 tag size = 76 INFO @ Sat, 08 Sep 2018 12:10:47: #1 tag size = 76 INFO @ Sat, 08 Sep 2018 12:10:47: #1 total tags in treatment: 39183158 INFO @ Sat, 08 Sep 2018 12:10:47: #1 total tags in treatment: 39183158 INFO @ Sat, 08 Sep 2018 12:10:47: #1 user defined the maximum tags... INFO @ Sat, 08 Sep 2018 12:10:47: #1 user defined the maximum tags... INFO @ Sat, 08 Sep 2018 12:10:47: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 08 Sep 2018 12:10:47: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 08 Sep 2018 12:10:48: #1 tags after filtering in treatment: 39183158 INFO @ Sat, 08 Sep 2018 12:10:48: #1 tags after filtering in treatment: 39183158 INFO @ Sat, 08 Sep 2018 12:10:48: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 08 Sep 2018 12:10:48: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 08 Sep 2018 12:10:48: #1 finished! INFO @ Sat, 08 Sep 2018 12:10:48: #1 finished! INFO @ Sat, 08 Sep 2018 12:10:48: #2 Build Peak Model... INFO @ Sat, 08 Sep 2018 12:10:48: #2 Build Peak Model... INFO @ Sat, 08 Sep 2018 12:10:48: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 08 Sep 2018 12:10:48: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 08 Sep 2018 12:10:50: #2 number of paired peaks: 0 WARNING @ Sat, 08 Sep 2018 12:10:50: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 08 Sep 2018 12:10:50: Process for pairing-model is terminated! INFO @ Sat, 08 Sep 2018 12:10:50: #2 number of paired peaks: 0 WARNING @ Sat, 08 Sep 2018 12:10:50: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 08 Sep 2018 12:10:50: Process for pairing-model is terminated! cat: SRX2973381.10_peaks.narrowPeak: そのようなファイルやディレクトリはありません cat: SRX2973381.05_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 6 millis pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX2973381.05_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2973381.05_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2973381.05_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX2973381.10_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2973381.10_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2973381.10_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。