Job ID = 11170813 sra ファイルのダウンロード中... Completed: 2190240K bytes transferred in 187 seconds (95885K bits/sec), in 1 file. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Read 81489952 spots for /home/okishinya/chipatlas/results/ce10/SRX2965738/SRR5766323.sra Written 81489952 spots for /home/okishinya/chipatlas/results/ce10/SRX2965738/SRR5766323.sra rm: cannot remove `[DSE]RX*': そのようなファイルやディレクトリはありません rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:32:57 81489952 reads; of these: 81489952 (100.00%) were unpaired; of these: 3649746 (4.48%) aligned 0 times 64462241 (79.10%) aligned exactly 1 time 13377965 (16.42%) aligned >1 times 95.52% overall alignment rate Time searching: 00:32:57 Overall time: 00:32:57 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 32 files... [bam_rmdupse_core] 21552300 / 77840206 = 0.2769 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Sat, 08 Sep 2018 12:23:44: # Command line: callpeak -t SRX2965738.bam -f BAM -g ce -n SRX2965738.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX2965738.05 # format = BAM # ChIP-seq file = ['SRX2965738.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 08 Sep 2018 12:23:44: # Command line: callpeak -t SRX2965738.bam -f BAM -g ce -n SRX2965738.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX2965738.10 # format = BAM # ChIP-seq file = ['SRX2965738.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 08 Sep 2018 12:23:44: # Command line: callpeak -t SRX2965738.bam -f BAM -g ce -n SRX2965738.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX2965738.20 # format = BAM # ChIP-seq file = ['SRX2965738.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 08 Sep 2018 12:23:44: #1 read tag files... INFO @ Sat, 08 Sep 2018 12:23:44: #1 read tag files... INFO @ Sat, 08 Sep 2018 12:23:44: #1 read tag files... INFO @ Sat, 08 Sep 2018 12:23:44: #1 read treatment tags... INFO @ Sat, 08 Sep 2018 12:23:44: #1 read treatment tags... INFO @ Sat, 08 Sep 2018 12:23:44: #1 read treatment tags... INFO @ Sat, 08 Sep 2018 12:23:52: 1000000 INFO @ Sat, 08 Sep 2018 12:23:52: 1000000 INFO @ Sat, 08 Sep 2018 12:23:52: 1000000 INFO @ Sat, 08 Sep 2018 12:24:00: 2000000 INFO @ Sat, 08 Sep 2018 12:24:01: 2000000 INFO @ Sat, 08 Sep 2018 12:24:01: 2000000 INFO @ Sat, 08 Sep 2018 12:24:08: 3000000 INFO @ Sat, 08 Sep 2018 12:24:09: 3000000 INFO @ Sat, 08 Sep 2018 12:24:09: 3000000 INFO @ Sat, 08 Sep 2018 12:24:16: 4000000 INFO @ Sat, 08 Sep 2018 12:24:17: 4000000 INFO @ Sat, 08 Sep 2018 12:24:17: 4000000 INFO @ Sat, 08 Sep 2018 12:24:24: 5000000 INFO @ Sat, 08 Sep 2018 12:24:25: 5000000 INFO @ Sat, 08 Sep 2018 12:24:25: 5000000 INFO @ Sat, 08 Sep 2018 12:24:31: 6000000 INFO @ Sat, 08 Sep 2018 12:24:34: 6000000 INFO @ Sat, 08 Sep 2018 12:24:34: 6000000 INFO @ Sat, 08 Sep 2018 12:24:39: 7000000 INFO @ Sat, 08 Sep 2018 12:24:42: 7000000 INFO @ Sat, 08 Sep 2018 12:24:42: 7000000 INFO @ Sat, 08 Sep 2018 12:24:47: 8000000 INFO @ Sat, 08 Sep 2018 12:24:50: 8000000 INFO @ Sat, 08 Sep 2018 12:24:50: 8000000 INFO @ Sat, 08 Sep 2018 12:24:55: 9000000 INFO @ Sat, 08 Sep 2018 12:24:58: 9000000 INFO @ Sat, 08 Sep 2018 12:24:58: 9000000 INFO @ Sat, 08 Sep 2018 12:25:03: 10000000 INFO @ Sat, 08 Sep 2018 12:25:07: 10000000 INFO @ Sat, 08 Sep 2018 12:25:07: 10000000 INFO @ Sat, 08 Sep 2018 12:25:11: 11000000 INFO @ Sat, 08 Sep 2018 12:25:15: 11000000 INFO @ Sat, 08 Sep 2018 12:25:15: 11000000 INFO @ Sat, 08 Sep 2018 12:25:19: 12000000 INFO @ Sat, 08 Sep 2018 12:25:23: 12000000 INFO @ Sat, 08 Sep 2018 12:25:23: 12000000 INFO @ Sat, 08 Sep 2018 12:25:27: 13000000 INFO @ Sat, 08 Sep 2018 12:25:31: 13000000 INFO @ Sat, 08 Sep 2018 12:25:31: 13000000 INFO @ Sat, 08 Sep 2018 12:25:35: 14000000 INFO @ Sat, 08 Sep 2018 12:25:39: 14000000 INFO @ Sat, 08 Sep 2018 12:25:39: 14000000 INFO @ Sat, 08 Sep 2018 12:25:44: 15000000 INFO @ Sat, 08 Sep 2018 12:25:47: 15000000 INFO @ Sat, 08 Sep 2018 12:25:47: 15000000 INFO @ Sat, 08 Sep 2018 12:25:52: 16000000 INFO @ Sat, 08 Sep 2018 12:25:55: 16000000 INFO @ Sat, 08 Sep 2018 12:25:55: 16000000 INFO @ Sat, 08 Sep 2018 12:26:00: 17000000 INFO @ Sat, 08 Sep 2018 12:26:03: 17000000 INFO @ Sat, 08 Sep 2018 12:26:03: 17000000 INFO @ Sat, 08 Sep 2018 12:26:08: 18000000 INFO @ Sat, 08 Sep 2018 12:26:11: 18000000 INFO @ Sat, 08 Sep 2018 12:26:11: 18000000 INFO @ Sat, 08 Sep 2018 12:26:16: 19000000 INFO @ Sat, 08 Sep 2018 12:26:19: 19000000 INFO @ Sat, 08 Sep 2018 12:26:19: 19000000 INFO @ Sat, 08 Sep 2018 12:26:24: 20000000 INFO @ Sat, 08 Sep 2018 12:26:27: 20000000 INFO @ Sat, 08 Sep 2018 12:26:27: 20000000 INFO @ Sat, 08 Sep 2018 12:26:32: 21000000 INFO @ Sat, 08 Sep 2018 12:26:36: 21000000 INFO @ Sat, 08 Sep 2018 12:26:36: 21000000 INFO @ Sat, 08 Sep 2018 12:26:40: 22000000 INFO @ Sat, 08 Sep 2018 12:26:44: 22000000 INFO @ Sat, 08 Sep 2018 12:26:44: 22000000 INFO @ Sat, 08 Sep 2018 12:26:48: 23000000 INFO @ Sat, 08 Sep 2018 12:26:52: 23000000 INFO @ Sat, 08 Sep 2018 12:26:52: 23000000 INFO @ Sat, 08 Sep 2018 12:26:57: 24000000 INFO @ Sat, 08 Sep 2018 12:27:00: 24000000 INFO @ Sat, 08 Sep 2018 12:27:00: 24000000 INFO @ Sat, 08 Sep 2018 12:27:05: 25000000 INFO @ Sat, 08 Sep 2018 12:27:08: 25000000 INFO @ Sat, 08 Sep 2018 12:27:08: 25000000 INFO @ Sat, 08 Sep 2018 12:27:13: 26000000 INFO @ Sat, 08 Sep 2018 12:27:16: 26000000 INFO @ Sat, 08 Sep 2018 12:27:16: 26000000 INFO @ Sat, 08 Sep 2018 12:27:21: 27000000 INFO @ Sat, 08 Sep 2018 12:27:24: 27000000 INFO @ Sat, 08 Sep 2018 12:27:24: 27000000 INFO @ Sat, 08 Sep 2018 12:27:29: 28000000 INFO @ Sat, 08 Sep 2018 12:27:32: 28000000 INFO @ Sat, 08 Sep 2018 12:27:32: 28000000 INFO @ Sat, 08 Sep 2018 12:27:37: 29000000 INFO @ Sat, 08 Sep 2018 12:27:40: 29000000 INFO @ Sat, 08 Sep 2018 12:27:40: 29000000 INFO @ Sat, 08 Sep 2018 12:27:45: 30000000 INFO @ Sat, 08 Sep 2018 12:27:48: 30000000 INFO @ Sat, 08 Sep 2018 12:27:48: 30000000 INFO @ Sat, 08 Sep 2018 12:27:53: 31000000 INFO @ Sat, 08 Sep 2018 12:27:57: 31000000 INFO @ Sat, 08 Sep 2018 12:27:57: 31000000 INFO @ Sat, 08 Sep 2018 12:28:01: 32000000 INFO @ Sat, 08 Sep 2018 12:28:05: 32000000 INFO @ Sat, 08 Sep 2018 12:28:05: 32000000 INFO @ Sat, 08 Sep 2018 12:28:09: 33000000 INFO @ Sat, 08 Sep 2018 12:28:13: 33000000 INFO @ Sat, 08 Sep 2018 12:28:13: 33000000 INFO @ Sat, 08 Sep 2018 12:28:17: 34000000 INFO @ Sat, 08 Sep 2018 12:28:21: 34000000 INFO @ Sat, 08 Sep 2018 12:28:21: 34000000 INFO @ Sat, 08 Sep 2018 12:28:25: 35000000 INFO @ Sat, 08 Sep 2018 12:28:29: 35000000 INFO @ Sat, 08 Sep 2018 12:28:29: 35000000 INFO @ Sat, 08 Sep 2018 12:28:33: 36000000 INFO @ Sat, 08 Sep 2018 12:28:37: 36000000 INFO @ Sat, 08 Sep 2018 12:28:37: 36000000 INFO @ Sat, 08 Sep 2018 12:28:41: 37000000 INFO @ Sat, 08 Sep 2018 12:28:46: 37000000 INFO @ Sat, 08 Sep 2018 12:28:46: 37000000 INFO @ Sat, 08 Sep 2018 12:28:49: 38000000 INFO @ Sat, 08 Sep 2018 12:28:54: 38000000 INFO @ Sat, 08 Sep 2018 12:28:54: 38000000 INFO @ Sat, 08 Sep 2018 12:28:57: 39000000 INFO @ Sat, 08 Sep 2018 12:29:02: 39000000 INFO @ Sat, 08 Sep 2018 12:29:02: 39000000 INFO @ Sat, 08 Sep 2018 12:29:04: 40000000 INFO @ Sat, 08 Sep 2018 12:29:11: 40000000 INFO @ Sat, 08 Sep 2018 12:29:11: 40000000 INFO @ Sat, 08 Sep 2018 12:29:12: 41000000 INFO @ Sat, 08 Sep 2018 12:29:19: 41000000 INFO @ Sat, 08 Sep 2018 12:29:19: 41000000 INFO @ Sat, 08 Sep 2018 12:29:20: 42000000 INFO @ Sat, 08 Sep 2018 12:29:27: 42000000 INFO @ Sat, 08 Sep 2018 12:29:27: 42000000 INFO @ Sat, 08 Sep 2018 12:29:28: 43000000 INFO @ Sat, 08 Sep 2018 12:29:35: 43000000 INFO @ Sat, 08 Sep 2018 12:29:35: 43000000 INFO @ Sat, 08 Sep 2018 12:29:37: 44000000 INFO @ Sat, 08 Sep 2018 12:29:43: 44000000 INFO @ Sat, 08 Sep 2018 12:29:43: 44000000 INFO @ Sat, 08 Sep 2018 12:29:45: 45000000 INFO @ Sat, 08 Sep 2018 12:29:51: 45000000 INFO @ Sat, 08 Sep 2018 12:29:51: 45000000 INFO @ Sat, 08 Sep 2018 12:29:52: 46000000 INFO @ Sat, 08 Sep 2018 12:29:59: 46000000 INFO @ Sat, 08 Sep 2018 12:29:59: 46000000 INFO @ Sat, 08 Sep 2018 12:30:00: 47000000 INFO @ Sat, 08 Sep 2018 12:30:07: 47000000 INFO @ Sat, 08 Sep 2018 12:30:07: 47000000 INFO @ Sat, 08 Sep 2018 12:30:08: 48000000 INFO @ Sat, 08 Sep 2018 12:30:15: 48000000 INFO @ Sat, 08 Sep 2018 12:30:15: 48000000 INFO @ Sat, 08 Sep 2018 12:30:16: 49000000 INFO @ Sat, 08 Sep 2018 12:30:23: 49000000 INFO @ Sat, 08 Sep 2018 12:30:23: 49000000 INFO @ Sat, 08 Sep 2018 12:30:24: 50000000 INFO @ Sat, 08 Sep 2018 12:30:31: 50000000 INFO @ Sat, 08 Sep 2018 12:30:31: 50000000 INFO @ Sat, 08 Sep 2018 12:30:32: 51000000 INFO @ Sat, 08 Sep 2018 12:30:39: 51000000 INFO @ Sat, 08 Sep 2018 12:30:39: 51000000 INFO @ Sat, 08 Sep 2018 12:30:40: 52000000 INFO @ Sat, 08 Sep 2018 12:30:47: 52000000 INFO @ Sat, 08 Sep 2018 12:30:47: 52000000 INFO @ Sat, 08 Sep 2018 12:30:48: 53000000 INFO @ Sat, 08 Sep 2018 12:30:55: 53000000 INFO @ Sat, 08 Sep 2018 12:30:55: 53000000 INFO @ Sat, 08 Sep 2018 12:30:56: 54000000 INFO @ Sat, 08 Sep 2018 12:31:04: 55000000 INFO @ Sat, 08 Sep 2018 12:31:04: 54000000 INFO @ Sat, 08 Sep 2018 12:31:04: 54000000 INFO @ Sat, 08 Sep 2018 12:31:11: 56000000 INFO @ Sat, 08 Sep 2018 12:31:12: 55000000 INFO @ Sat, 08 Sep 2018 12:31:12: 55000000 INFO @ Sat, 08 Sep 2018 12:31:14: #1 tag size is determined as 76 bps INFO @ Sat, 08 Sep 2018 12:31:14: #1 tag size = 76 INFO @ Sat, 08 Sep 2018 12:31:14: #1 total tags in treatment: 56287906 INFO @ Sat, 08 Sep 2018 12:31:14: #1 user defined the maximum tags... INFO @ Sat, 08 Sep 2018 12:31:14: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 08 Sep 2018 12:31:15: #1 tags after filtering in treatment: 56287906 INFO @ Sat, 08 Sep 2018 12:31:15: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 08 Sep 2018 12:31:15: #1 finished! INFO @ Sat, 08 Sep 2018 12:31:15: #2 Build Peak Model... INFO @ Sat, 08 Sep 2018 12:31:15: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 08 Sep 2018 12:31:18: #2 number of paired peaks: 0 WARNING @ Sat, 08 Sep 2018 12:31:18: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 08 Sep 2018 12:31:18: Process for pairing-model is terminated! cat: SRX2965738.20_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX2965738.20_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2965738.20_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2965738.20_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Sat, 08 Sep 2018 12:31:20: 56000000 INFO @ Sat, 08 Sep 2018 12:31:20: 56000000 INFO @ Sat, 08 Sep 2018 12:31:23: #1 tag size is determined as 76 bps INFO @ Sat, 08 Sep 2018 12:31:23: #1 tag size is determined as 76 bps INFO @ Sat, 08 Sep 2018 12:31:23: #1 tag size = 76 INFO @ Sat, 08 Sep 2018 12:31:23: #1 tag size = 76 INFO @ Sat, 08 Sep 2018 12:31:23: #1 total tags in treatment: 56287906 INFO @ Sat, 08 Sep 2018 12:31:23: #1 total tags in treatment: 56287906 INFO @ Sat, 08 Sep 2018 12:31:23: #1 user defined the maximum tags... INFO @ Sat, 08 Sep 2018 12:31:23: #1 user defined the maximum tags... INFO @ Sat, 08 Sep 2018 12:31:23: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 08 Sep 2018 12:31:23: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 08 Sep 2018 12:31:24: #1 tags after filtering in treatment: 56287906 INFO @ Sat, 08 Sep 2018 12:31:24: #1 tags after filtering in treatment: 56287906 INFO @ Sat, 08 Sep 2018 12:31:24: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 08 Sep 2018 12:31:24: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 08 Sep 2018 12:31:24: #1 finished! INFO @ Sat, 08 Sep 2018 12:31:24: #1 finished! INFO @ Sat, 08 Sep 2018 12:31:24: #2 Build Peak Model... INFO @ Sat, 08 Sep 2018 12:31:24: #2 Build Peak Model... INFO @ Sat, 08 Sep 2018 12:31:24: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 08 Sep 2018 12:31:24: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 08 Sep 2018 12:31:27: #2 number of paired peaks: 0 WARNING @ Sat, 08 Sep 2018 12:31:27: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 08 Sep 2018 12:31:27: Process for pairing-model is terminated! cat: SRX2965738.05_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX2965738.05_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2965738.05_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2965738.05_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Sat, 08 Sep 2018 12:31:28: #2 number of paired peaks: 0 WARNING @ Sat, 08 Sep 2018 12:31:28: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 08 Sep 2018 12:31:28: Process for pairing-model is terminated! cat: SRX2965738.10_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 2 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX2965738.10_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2965738.10_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2965738.10_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。