Job ID = 11170811 sra ファイルのダウンロード中... Completed: 1986719K bytes transferred in 158 seconds (102631K bits/sec), in 1 file. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Read 71862577 spots for /home/okishinya/chipatlas/results/ce10/SRX2965736/SRR5766321.sra Written 71862577 spots for /home/okishinya/chipatlas/results/ce10/SRX2965736/SRR5766321.sra rm: cannot remove `[DSE]RX*': そのようなファイルやディレクトリはありません rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:28:45 71862577 reads; of these: 71862577 (100.00%) were unpaired; of these: 4849666 (6.75%) aligned 0 times 56181966 (78.18%) aligned exactly 1 time 10830945 (15.07%) aligned >1 times 93.25% overall alignment rate Time searching: 00:28:45 Overall time: 00:28:45 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 28 files... [bam_rmdupse_core] 22904667 / 67012911 = 0.3418 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Sat, 08 Sep 2018 12:16:09: # Command line: callpeak -t SRX2965736.bam -f BAM -g ce -n SRX2965736.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX2965736.10 # format = BAM # ChIP-seq file = ['SRX2965736.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 08 Sep 2018 12:16:09: # Command line: callpeak -t SRX2965736.bam -f BAM -g ce -n SRX2965736.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX2965736.20 # format = BAM # ChIP-seq file = ['SRX2965736.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 08 Sep 2018 12:16:09: #1 read tag files... INFO @ Sat, 08 Sep 2018 12:16:09: #1 read tag files... INFO @ Sat, 08 Sep 2018 12:16:09: #1 read treatment tags... INFO @ Sat, 08 Sep 2018 12:16:09: #1 read treatment tags... INFO @ Sat, 08 Sep 2018 12:16:09: # Command line: callpeak -t SRX2965736.bam -f BAM -g ce -n SRX2965736.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX2965736.05 # format = BAM # ChIP-seq file = ['SRX2965736.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 08 Sep 2018 12:16:09: #1 read tag files... INFO @ Sat, 08 Sep 2018 12:16:09: #1 read treatment tags... INFO @ Sat, 08 Sep 2018 12:16:17: 1000000 INFO @ Sat, 08 Sep 2018 12:16:17: 1000000 INFO @ Sat, 08 Sep 2018 12:16:17: 1000000 INFO @ Sat, 08 Sep 2018 12:16:25: 2000000 INFO @ Sat, 08 Sep 2018 12:16:25: 2000000 INFO @ Sat, 08 Sep 2018 12:16:25: 2000000 INFO @ Sat, 08 Sep 2018 12:16:33: 3000000 INFO @ Sat, 08 Sep 2018 12:16:34: 3000000 INFO @ Sat, 08 Sep 2018 12:16:34: 3000000 INFO @ Sat, 08 Sep 2018 12:16:41: 4000000 INFO @ Sat, 08 Sep 2018 12:16:42: 4000000 INFO @ Sat, 08 Sep 2018 12:16:42: 4000000 INFO @ Sat, 08 Sep 2018 12:16:49: 5000000 INFO @ Sat, 08 Sep 2018 12:16:50: 5000000 INFO @ Sat, 08 Sep 2018 12:16:50: 5000000 INFO @ Sat, 08 Sep 2018 12:16:57: 6000000 INFO @ Sat, 08 Sep 2018 12:16:58: 6000000 INFO @ Sat, 08 Sep 2018 12:16:58: 6000000 INFO @ Sat, 08 Sep 2018 12:17:06: 7000000 INFO @ Sat, 08 Sep 2018 12:17:06: 7000000 INFO @ Sat, 08 Sep 2018 12:17:06: 7000000 INFO @ Sat, 08 Sep 2018 12:17:14: 8000000 INFO @ Sat, 08 Sep 2018 12:17:15: 8000000 INFO @ Sat, 08 Sep 2018 12:17:15: 8000000 INFO @ Sat, 08 Sep 2018 12:17:22: 9000000 INFO @ Sat, 08 Sep 2018 12:17:23: 9000000 INFO @ Sat, 08 Sep 2018 12:17:23: 9000000 INFO @ Sat, 08 Sep 2018 12:17:29: 10000000 INFO @ Sat, 08 Sep 2018 12:17:32: 10000000 INFO @ Sat, 08 Sep 2018 12:17:32: 10000000 INFO @ Sat, 08 Sep 2018 12:17:37: 11000000 INFO @ Sat, 08 Sep 2018 12:17:40: 11000000 INFO @ Sat, 08 Sep 2018 12:17:40: 11000000 INFO @ Sat, 08 Sep 2018 12:17:45: 12000000 INFO @ Sat, 08 Sep 2018 12:17:49: 12000000 INFO @ Sat, 08 Sep 2018 12:17:49: 12000000 INFO @ Sat, 08 Sep 2018 12:17:53: 13000000 INFO @ Sat, 08 Sep 2018 12:17:58: 13000000 INFO @ Sat, 08 Sep 2018 12:17:58: 13000000 INFO @ Sat, 08 Sep 2018 12:18:01: 14000000 INFO @ Sat, 08 Sep 2018 12:18:06: 14000000 INFO @ Sat, 08 Sep 2018 12:18:06: 14000000 INFO @ Sat, 08 Sep 2018 12:18:08: 15000000 INFO @ Sat, 08 Sep 2018 12:18:15: 15000000 INFO @ Sat, 08 Sep 2018 12:18:15: 15000000 INFO @ Sat, 08 Sep 2018 12:18:16: 16000000 INFO @ Sat, 08 Sep 2018 12:18:23: 16000000 INFO @ Sat, 08 Sep 2018 12:18:23: 16000000 INFO @ Sat, 08 Sep 2018 12:18:24: 17000000 INFO @ Sat, 08 Sep 2018 12:18:32: 18000000 INFO @ Sat, 08 Sep 2018 12:18:32: 17000000 INFO @ Sat, 08 Sep 2018 12:18:32: 17000000 INFO @ Sat, 08 Sep 2018 12:18:40: 19000000 INFO @ Sat, 08 Sep 2018 12:18:41: 18000000 INFO @ Sat, 08 Sep 2018 12:18:41: 18000000 INFO @ Sat, 08 Sep 2018 12:18:48: 20000000 INFO @ Sat, 08 Sep 2018 12:18:49: 19000000 INFO @ Sat, 08 Sep 2018 12:18:49: 19000000 INFO @ Sat, 08 Sep 2018 12:18:56: 21000000 INFO @ Sat, 08 Sep 2018 12:18:58: 20000000 INFO @ Sat, 08 Sep 2018 12:18:58: 20000000 INFO @ Sat, 08 Sep 2018 12:19:04: 22000000 INFO @ Sat, 08 Sep 2018 12:19:07: 21000000 INFO @ Sat, 08 Sep 2018 12:19:07: 21000000 INFO @ Sat, 08 Sep 2018 12:19:12: 23000000 INFO @ Sat, 08 Sep 2018 12:19:16: 22000000 INFO @ Sat, 08 Sep 2018 12:19:16: 22000000 INFO @ Sat, 08 Sep 2018 12:19:20: 24000000 INFO @ Sat, 08 Sep 2018 12:19:24: 23000000 INFO @ Sat, 08 Sep 2018 12:19:24: 23000000 INFO @ Sat, 08 Sep 2018 12:19:27: 25000000 INFO @ Sat, 08 Sep 2018 12:19:33: 24000000 INFO @ Sat, 08 Sep 2018 12:19:33: 24000000 INFO @ Sat, 08 Sep 2018 12:19:35: 26000000 INFO @ Sat, 08 Sep 2018 12:19:41: 25000000 INFO @ Sat, 08 Sep 2018 12:19:41: 25000000 INFO @ Sat, 08 Sep 2018 12:19:43: 27000000 INFO @ Sat, 08 Sep 2018 12:19:50: 26000000 INFO @ Sat, 08 Sep 2018 12:19:50: 26000000 INFO @ Sat, 08 Sep 2018 12:19:51: 28000000 INFO @ Sat, 08 Sep 2018 12:19:59: 27000000 INFO @ Sat, 08 Sep 2018 12:19:59: 27000000 INFO @ Sat, 08 Sep 2018 12:19:59: 29000000 INFO @ Sat, 08 Sep 2018 12:20:07: 28000000 INFO @ Sat, 08 Sep 2018 12:20:07: 28000000 INFO @ Sat, 08 Sep 2018 12:20:07: 30000000 INFO @ Sat, 08 Sep 2018 12:20:15: 31000000 INFO @ Sat, 08 Sep 2018 12:20:16: 29000000 INFO @ Sat, 08 Sep 2018 12:20:16: 29000000 INFO @ Sat, 08 Sep 2018 12:20:24: 32000000 INFO @ Sat, 08 Sep 2018 12:20:24: 30000000 INFO @ Sat, 08 Sep 2018 12:20:24: 30000000 INFO @ Sat, 08 Sep 2018 12:20:31: 33000000 INFO @ Sat, 08 Sep 2018 12:20:33: 31000000 INFO @ Sat, 08 Sep 2018 12:20:33: 31000000 INFO @ Sat, 08 Sep 2018 12:20:39: 34000000 INFO @ Sat, 08 Sep 2018 12:20:41: 32000000 INFO @ Sat, 08 Sep 2018 12:20:41: 32000000 INFO @ Sat, 08 Sep 2018 12:20:47: 35000000 INFO @ Sat, 08 Sep 2018 12:20:50: 33000000 INFO @ Sat, 08 Sep 2018 12:20:50: 33000000 INFO @ Sat, 08 Sep 2018 12:20:55: 36000000 INFO @ Sat, 08 Sep 2018 12:20:58: 34000000 INFO @ Sat, 08 Sep 2018 12:20:58: 34000000 INFO @ Sat, 08 Sep 2018 12:21:03: 37000000 INFO @ Sat, 08 Sep 2018 12:21:06: 35000000 INFO @ Sat, 08 Sep 2018 12:21:06: 35000000 INFO @ Sat, 08 Sep 2018 12:21:11: 38000000 INFO @ Sat, 08 Sep 2018 12:21:15: 36000000 INFO @ Sat, 08 Sep 2018 12:21:15: 36000000 INFO @ Sat, 08 Sep 2018 12:21:19: 39000000 INFO @ Sat, 08 Sep 2018 12:21:23: 37000000 INFO @ Sat, 08 Sep 2018 12:21:23: 37000000 INFO @ Sat, 08 Sep 2018 12:21:27: 40000000 INFO @ Sat, 08 Sep 2018 12:21:32: 38000000 INFO @ Sat, 08 Sep 2018 12:21:32: 38000000 INFO @ Sat, 08 Sep 2018 12:21:34: 41000000 INFO @ Sat, 08 Sep 2018 12:21:40: 39000000 INFO @ Sat, 08 Sep 2018 12:21:40: 39000000 INFO @ Sat, 08 Sep 2018 12:21:42: 42000000 INFO @ Sat, 08 Sep 2018 12:21:49: 40000000 INFO @ Sat, 08 Sep 2018 12:21:49: 40000000 INFO @ Sat, 08 Sep 2018 12:21:50: 43000000 INFO @ Sat, 08 Sep 2018 12:21:58: 41000000 INFO @ Sat, 08 Sep 2018 12:21:58: 41000000 INFO @ Sat, 08 Sep 2018 12:21:58: 44000000 INFO @ Sat, 08 Sep 2018 12:21:59: #1 tag size is determined as 76 bps INFO @ Sat, 08 Sep 2018 12:21:59: #1 tag size = 76 INFO @ Sat, 08 Sep 2018 12:21:59: #1 total tags in treatment: 44108244 INFO @ Sat, 08 Sep 2018 12:21:59: #1 user defined the maximum tags... INFO @ Sat, 08 Sep 2018 12:21:59: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 08 Sep 2018 12:22:00: #1 tags after filtering in treatment: 44108244 INFO @ Sat, 08 Sep 2018 12:22:00: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 08 Sep 2018 12:22:00: #1 finished! INFO @ Sat, 08 Sep 2018 12:22:00: #2 Build Peak Model... INFO @ Sat, 08 Sep 2018 12:22:00: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 08 Sep 2018 12:22:03: #2 number of paired peaks: 0 WARNING @ Sat, 08 Sep 2018 12:22:03: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 08 Sep 2018 12:22:03: Process for pairing-model is terminated! cat: SRX2965736.20_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX2965736.20_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2965736.20_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2965736.20_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Sat, 08 Sep 2018 12:22:06: 42000000 INFO @ Sat, 08 Sep 2018 12:22:06: 42000000 INFO @ Sat, 08 Sep 2018 12:22:14: 43000000 INFO @ Sat, 08 Sep 2018 12:22:14: 43000000 INFO @ Sat, 08 Sep 2018 12:22:21: 44000000 INFO @ Sat, 08 Sep 2018 12:22:21: 44000000 INFO @ Sat, 08 Sep 2018 12:22:22: #1 tag size is determined as 76 bps INFO @ Sat, 08 Sep 2018 12:22:22: #1 tag size = 76 INFO @ Sat, 08 Sep 2018 12:22:22: #1 total tags in treatment: 44108244 INFO @ Sat, 08 Sep 2018 12:22:22: #1 user defined the maximum tags... INFO @ Sat, 08 Sep 2018 12:22:22: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 08 Sep 2018 12:22:23: #1 tag size is determined as 76 bps INFO @ Sat, 08 Sep 2018 12:22:23: #1 tag size = 76 INFO @ Sat, 08 Sep 2018 12:22:23: #1 total tags in treatment: 44108244 INFO @ Sat, 08 Sep 2018 12:22:23: #1 user defined the maximum tags... INFO @ Sat, 08 Sep 2018 12:22:23: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 08 Sep 2018 12:22:23: #1 tags after filtering in treatment: 44108244 INFO @ Sat, 08 Sep 2018 12:22:23: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 08 Sep 2018 12:22:23: #1 finished! INFO @ Sat, 08 Sep 2018 12:22:23: #2 Build Peak Model... INFO @ Sat, 08 Sep 2018 12:22:23: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 08 Sep 2018 12:22:24: #1 tags after filtering in treatment: 44108244 INFO @ Sat, 08 Sep 2018 12:22:24: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 08 Sep 2018 12:22:24: #1 finished! INFO @ Sat, 08 Sep 2018 12:22:24: #2 Build Peak Model... INFO @ Sat, 08 Sep 2018 12:22:24: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 08 Sep 2018 12:22:26: #2 number of paired peaks: 0 WARNING @ Sat, 08 Sep 2018 12:22:26: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 08 Sep 2018 12:22:26: Process for pairing-model is terminated! cat: SRX2965736.05_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX2965736.05_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2965736.05_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2965736.05_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Sat, 08 Sep 2018 12:22:26: #2 number of paired peaks: 0 WARNING @ Sat, 08 Sep 2018 12:22:26: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 08 Sep 2018 12:22:26: Process for pairing-model is terminated! cat: SRX2965736.10_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 2 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX2965736.10_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2965736.10_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2965736.10_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。