Job ID = 10609063 sra ファイルのダウンロード中... Completed: 3675494K bytes transferred in 37 seconds (800613K bits/sec), in 1 file. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Read 143891247 spots for /home/okishinya/chipatlas/results/ce10/SRX2202790/SRR4319296.sra Written 143891247 spots for /home/okishinya/chipatlas/results/ce10/SRX2202790/SRR4319296.sra rm: cannot remove `[DSE]RX*': そのようなファイルやディレクトリはありません rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:32:31 143891247 reads; of these: 143891247 (100.00%) were unpaired; of these: 3681275 (2.56%) aligned 0 times 117089554 (81.37%) aligned exactly 1 time 23120418 (16.07%) aligned >1 times 97.44% overall alignment rate Time searching: 00:32:31 Overall time: 00:32:31 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 60 files... [bam_rmdupse_core] 66443491 / 140209972 = 0.4739 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Fri, 04 May 2018 08:14:27: # Command line: callpeak -t SRX2202790.bam -f BAM -g ce -n SRX2202790.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX2202790.20 # format = BAM # ChIP-seq file = ['SRX2202790.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 04 May 2018 08:14:27: # Command line: callpeak -t SRX2202790.bam -f BAM -g ce -n SRX2202790.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX2202790.10 # format = BAM # ChIP-seq file = ['SRX2202790.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 04 May 2018 08:14:27: # Command line: callpeak -t SRX2202790.bam -f BAM -g ce -n SRX2202790.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX2202790.05 # format = BAM # ChIP-seq file = ['SRX2202790.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 04 May 2018 08:14:27: #1 read tag files... INFO @ Fri, 04 May 2018 08:14:27: #1 read tag files... INFO @ Fri, 04 May 2018 08:14:27: #1 read tag files... INFO @ Fri, 04 May 2018 08:14:27: #1 read treatment tags... INFO @ Fri, 04 May 2018 08:14:27: #1 read treatment tags... INFO @ Fri, 04 May 2018 08:14:27: #1 read treatment tags... INFO @ Fri, 04 May 2018 08:14:35: 1000000 INFO @ Fri, 04 May 2018 08:14:35: 1000000 INFO @ Fri, 04 May 2018 08:14:35: 1000000 INFO @ Fri, 04 May 2018 08:14:42: 2000000 INFO @ Fri, 04 May 2018 08:14:42: 2000000 INFO @ Fri, 04 May 2018 08:14:42: 2000000 INFO @ Fri, 04 May 2018 08:14:49: 3000000 INFO @ Fri, 04 May 2018 08:14:49: 3000000 INFO @ Fri, 04 May 2018 08:14:49: 3000000 INFO @ Fri, 04 May 2018 08:14:56: 4000000 INFO @ Fri, 04 May 2018 08:14:57: 4000000 INFO @ Fri, 04 May 2018 08:14:57: 4000000 INFO @ Fri, 04 May 2018 08:15:03: 5000000 INFO @ Fri, 04 May 2018 08:15:04: 5000000 INFO @ Fri, 04 May 2018 08:15:04: 5000000 INFO @ Fri, 04 May 2018 08:15:11: 6000000 INFO @ Fri, 04 May 2018 08:15:11: 6000000 INFO @ Fri, 04 May 2018 08:15:11: 6000000 INFO @ Fri, 04 May 2018 08:15:18: 7000000 INFO @ Fri, 04 May 2018 08:15:19: 7000000 INFO @ Fri, 04 May 2018 08:15:19: 7000000 INFO @ Fri, 04 May 2018 08:15:25: 8000000 INFO @ Fri, 04 May 2018 08:15:26: 8000000 INFO @ Fri, 04 May 2018 08:15:26: 8000000 INFO @ Fri, 04 May 2018 08:15:32: 9000000 INFO @ Fri, 04 May 2018 08:15:33: 9000000 INFO @ Fri, 04 May 2018 08:15:33: 9000000 INFO @ Fri, 04 May 2018 08:15:39: 10000000 INFO @ Fri, 04 May 2018 08:15:41: 10000000 INFO @ Fri, 04 May 2018 08:15:41: 10000000 INFO @ Fri, 04 May 2018 08:15:46: 11000000 INFO @ Fri, 04 May 2018 08:15:48: 11000000 INFO @ Fri, 04 May 2018 08:15:48: 11000000 INFO @ Fri, 04 May 2018 08:15:54: 12000000 INFO @ Fri, 04 May 2018 08:15:56: 12000000 INFO @ Fri, 04 May 2018 08:15:56: 12000000 INFO @ Fri, 04 May 2018 08:16:01: 13000000 INFO @ Fri, 04 May 2018 08:16:03: 13000000 INFO @ Fri, 04 May 2018 08:16:03: 13000000 INFO @ Fri, 04 May 2018 08:16:08: 14000000 INFO @ Fri, 04 May 2018 08:16:10: 14000000 INFO @ Fri, 04 May 2018 08:16:10: 14000000 INFO @ Fri, 04 May 2018 08:16:15: 15000000 INFO @ Fri, 04 May 2018 08:16:18: 15000000 INFO @ Fri, 04 May 2018 08:16:18: 15000000 INFO @ Fri, 04 May 2018 08:16:22: 16000000 INFO @ Fri, 04 May 2018 08:16:25: 16000000 INFO @ Fri, 04 May 2018 08:16:25: 16000000 INFO @ Fri, 04 May 2018 08:16:29: 17000000 INFO @ Fri, 04 May 2018 08:16:32: 17000000 INFO @ Fri, 04 May 2018 08:16:32: 17000000 INFO @ Fri, 04 May 2018 08:16:36: 18000000 INFO @ Fri, 04 May 2018 08:16:39: 18000000 INFO @ Fri, 04 May 2018 08:16:40: 18000000 INFO @ Fri, 04 May 2018 08:16:44: 19000000 INFO @ Fri, 04 May 2018 08:16:47: 19000000 INFO @ Fri, 04 May 2018 08:16:47: 19000000 INFO @ Fri, 04 May 2018 08:16:51: 20000000 INFO @ Fri, 04 May 2018 08:16:54: 20000000 INFO @ Fri, 04 May 2018 08:16:55: 20000000 INFO @ Fri, 04 May 2018 08:16:58: 21000000 INFO @ Fri, 04 May 2018 08:17:02: 21000000 INFO @ Fri, 04 May 2018 08:17:02: 21000000 INFO @ Fri, 04 May 2018 08:17:05: 22000000 INFO @ Fri, 04 May 2018 08:17:09: 22000000 INFO @ Fri, 04 May 2018 08:17:10: 22000000 INFO @ Fri, 04 May 2018 08:17:12: 23000000 INFO @ Fri, 04 May 2018 08:17:17: 23000000 INFO @ Fri, 04 May 2018 08:17:18: 23000000 INFO @ Fri, 04 May 2018 08:17:19: 24000000 INFO @ Fri, 04 May 2018 08:17:24: 24000000 INFO @ Fri, 04 May 2018 08:17:25: 24000000 INFO @ Fri, 04 May 2018 08:17:26: 25000000 INFO @ Fri, 04 May 2018 08:17:32: 25000000 INFO @ Fri, 04 May 2018 08:17:33: 25000000 INFO @ Fri, 04 May 2018 08:17:34: 26000000 INFO @ Fri, 04 May 2018 08:17:39: 26000000 INFO @ Fri, 04 May 2018 08:17:40: 26000000 INFO @ Fri, 04 May 2018 08:17:41: 27000000 INFO @ Fri, 04 May 2018 08:17:47: 27000000 INFO @ Fri, 04 May 2018 08:17:48: 27000000 INFO @ Fri, 04 May 2018 08:17:48: 28000000 INFO @ Fri, 04 May 2018 08:17:54: 28000000 INFO @ Fri, 04 May 2018 08:17:55: 29000000 INFO @ Fri, 04 May 2018 08:17:55: 28000000 INFO @ Fri, 04 May 2018 08:18:02: 30000000 INFO @ Fri, 04 May 2018 08:18:02: 29000000 INFO @ Fri, 04 May 2018 08:18:03: 29000000 INFO @ Fri, 04 May 2018 08:18:09: 31000000 INFO @ Fri, 04 May 2018 08:18:09: 30000000 INFO @ Fri, 04 May 2018 08:18:10: 30000000 INFO @ Fri, 04 May 2018 08:18:16: 32000000 INFO @ Fri, 04 May 2018 08:18:17: 31000000 INFO @ Fri, 04 May 2018 08:18:17: 31000000 INFO @ Fri, 04 May 2018 08:18:23: 33000000 INFO @ Fri, 04 May 2018 08:18:24: 32000000 INFO @ Fri, 04 May 2018 08:18:25: 32000000 INFO @ Fri, 04 May 2018 08:18:30: 34000000 INFO @ Fri, 04 May 2018 08:18:32: 33000000 INFO @ Fri, 04 May 2018 08:18:32: 33000000 INFO @ Fri, 04 May 2018 08:18:37: 35000000 INFO @ Fri, 04 May 2018 08:18:39: 34000000 INFO @ Fri, 04 May 2018 08:18:40: 34000000 INFO @ Fri, 04 May 2018 08:18:44: 36000000 INFO @ Fri, 04 May 2018 08:18:47: 35000000 INFO @ Fri, 04 May 2018 08:18:47: 35000000 INFO @ Fri, 04 May 2018 08:18:51: 37000000 INFO @ Fri, 04 May 2018 08:18:54: 36000000 INFO @ Fri, 04 May 2018 08:18:55: 36000000 INFO @ Fri, 04 May 2018 08:18:59: 38000000 INFO @ Fri, 04 May 2018 08:19:01: 37000000 INFO @ Fri, 04 May 2018 08:19:02: 37000000 INFO @ Fri, 04 May 2018 08:19:06: 39000000 INFO @ Fri, 04 May 2018 08:19:08: 38000000 INFO @ Fri, 04 May 2018 08:19:10: 38000000 INFO @ Fri, 04 May 2018 08:19:14: 40000000 INFO @ Fri, 04 May 2018 08:19:15: 39000000 INFO @ Fri, 04 May 2018 08:19:17: 39000000 INFO @ Fri, 04 May 2018 08:19:21: 41000000 INFO @ Fri, 04 May 2018 08:19:22: 40000000 INFO @ Fri, 04 May 2018 08:19:25: 40000000 INFO @ Fri, 04 May 2018 08:19:29: 42000000 INFO @ Fri, 04 May 2018 08:19:29: 41000000 INFO @ Fri, 04 May 2018 08:19:33: 41000000 INFO @ Fri, 04 May 2018 08:19:36: 42000000 INFO @ Fri, 04 May 2018 08:19:36: 43000000 INFO @ Fri, 04 May 2018 08:19:40: 42000000 INFO @ Fri, 04 May 2018 08:19:43: 43000000 INFO @ Fri, 04 May 2018 08:19:44: 44000000 INFO @ Fri, 04 May 2018 08:19:47: 43000000 INFO @ Fri, 04 May 2018 08:19:51: 44000000 INFO @ Fri, 04 May 2018 08:19:51: 45000000 INFO @ Fri, 04 May 2018 08:19:54: 44000000 INFO @ Fri, 04 May 2018 08:19:58: 45000000 INFO @ Fri, 04 May 2018 08:19:59: 46000000 INFO @ Fri, 04 May 2018 08:20:01: 45000000 INFO @ Fri, 04 May 2018 08:20:06: 46000000 INFO @ Fri, 04 May 2018 08:20:07: 47000000 INFO @ Fri, 04 May 2018 08:20:08: 46000000 INFO @ Fri, 04 May 2018 08:20:13: 47000000 INFO @ Fri, 04 May 2018 08:20:15: 47000000 INFO @ Fri, 04 May 2018 08:20:15: 48000000 INFO @ Fri, 04 May 2018 08:20:21: 48000000 INFO @ Fri, 04 May 2018 08:20:22: 48000000 INFO @ Fri, 04 May 2018 08:20:22: 49000000 INFO @ Fri, 04 May 2018 08:20:29: 49000000 INFO @ Fri, 04 May 2018 08:20:29: 49000000 INFO @ Fri, 04 May 2018 08:20:30: 50000000 INFO @ Fri, 04 May 2018 08:20:36: 50000000 INFO @ Fri, 04 May 2018 08:20:36: 50000000 INFO @ Fri, 04 May 2018 08:20:38: 51000000 INFO @ Fri, 04 May 2018 08:20:43: 51000000 INFO @ Fri, 04 May 2018 08:20:44: 51000000 INFO @ Fri, 04 May 2018 08:20:46: 52000000 INFO @ Fri, 04 May 2018 08:20:49: 52000000 INFO @ Fri, 04 May 2018 08:20:51: 52000000 INFO @ Fri, 04 May 2018 08:20:53: 53000000 INFO @ Fri, 04 May 2018 08:20:56: 53000000 INFO @ Fri, 04 May 2018 08:20:59: 53000000 INFO @ Fri, 04 May 2018 08:21:01: 54000000 INFO @ Fri, 04 May 2018 08:21:03: 54000000 INFO @ Fri, 04 May 2018 08:21:06: 54000000 INFO @ Fri, 04 May 2018 08:21:09: 55000000 INFO @ Fri, 04 May 2018 08:21:10: 55000000 INFO @ Fri, 04 May 2018 08:21:14: 55000000 INFO @ Fri, 04 May 2018 08:21:17: 56000000 INFO @ Fri, 04 May 2018 08:21:17: 56000000 INFO @ Fri, 04 May 2018 08:21:21: 56000000 INFO @ Fri, 04 May 2018 08:21:24: 57000000 INFO @ Fri, 04 May 2018 08:21:25: 57000000 INFO @ Fri, 04 May 2018 08:21:28: 57000000 INFO @ Fri, 04 May 2018 08:21:32: 58000000 INFO @ Fri, 04 May 2018 08:21:32: 58000000 INFO @ Fri, 04 May 2018 08:21:35: 58000000 INFO @ Fri, 04 May 2018 08:21:39: 59000000 INFO @ Fri, 04 May 2018 08:21:40: 59000000 INFO @ Fri, 04 May 2018 08:21:43: 59000000 INFO @ Fri, 04 May 2018 08:21:47: 60000000 INFO @ Fri, 04 May 2018 08:21:47: 60000000 INFO @ Fri, 04 May 2018 08:21:50: 60000000 INFO @ Fri, 04 May 2018 08:21:54: 61000000 INFO @ Fri, 04 May 2018 08:21:55: 61000000 INFO @ Fri, 04 May 2018 08:21:58: 61000000 INFO @ Fri, 04 May 2018 08:22:01: 62000000 INFO @ Fri, 04 May 2018 08:22:02: 62000000 INFO @ Fri, 04 May 2018 08:22:05: 62000000 INFO @ Fri, 04 May 2018 08:22:08: 63000000 INFO @ Fri, 04 May 2018 08:22:10: 63000000 INFO @ Fri, 04 May 2018 08:22:12: 63000000 INFO @ Fri, 04 May 2018 08:22:16: 64000000 INFO @ Fri, 04 May 2018 08:22:18: 64000000 INFO @ Fri, 04 May 2018 08:22:20: 64000000 INFO @ Fri, 04 May 2018 08:22:23: 65000000 INFO @ Fri, 04 May 2018 08:22:26: 65000000 INFO @ Fri, 04 May 2018 08:22:27: 65000000 INFO @ Fri, 04 May 2018 08:22:30: 66000000 INFO @ Fri, 04 May 2018 08:22:33: 66000000 INFO @ Fri, 04 May 2018 08:22:34: 66000000 INFO @ Fri, 04 May 2018 08:22:37: 67000000 INFO @ Fri, 04 May 2018 08:22:41: 67000000 INFO @ Fri, 04 May 2018 08:22:42: 67000000 INFO @ Fri, 04 May 2018 08:22:45: 68000000 INFO @ Fri, 04 May 2018 08:22:49: 68000000 INFO @ Fri, 04 May 2018 08:22:49: 68000000 INFO @ Fri, 04 May 2018 08:22:53: 69000000 INFO @ Fri, 04 May 2018 08:22:56: 69000000 INFO @ Fri, 04 May 2018 08:22:56: 69000000 INFO @ Fri, 04 May 2018 08:23:00: 70000000 INFO @ Fri, 04 May 2018 08:23:03: 70000000 INFO @ Fri, 04 May 2018 08:23:04: 70000000 INFO @ Fri, 04 May 2018 08:23:08: 71000000 INFO @ Fri, 04 May 2018 08:23:10: 71000000 INFO @ Fri, 04 May 2018 08:23:12: 71000000 INFO @ Fri, 04 May 2018 08:23:16: 72000000 INFO @ Fri, 04 May 2018 08:23:17: 72000000 INFO @ Fri, 04 May 2018 08:23:19: 72000000 INFO @ Fri, 04 May 2018 08:23:23: 73000000 INFO @ Fri, 04 May 2018 08:23:24: 73000000 INFO @ Fri, 04 May 2018 08:23:27: 73000000 INFO @ Fri, 04 May 2018 08:23:30: #1 tag size is determined as 59 bps INFO @ Fri, 04 May 2018 08:23:30: #1 tag size = 59 INFO @ Fri, 04 May 2018 08:23:30: #1 total tags in treatment: 73766481 INFO @ Fri, 04 May 2018 08:23:30: #1 user defined the maximum tags... INFO @ Fri, 04 May 2018 08:23:30: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 04 May 2018 08:23:31: #1 tag size is determined as 59 bps INFO @ Fri, 04 May 2018 08:23:31: #1 tag size = 59 INFO @ Fri, 04 May 2018 08:23:31: #1 total tags in treatment: 73766481 INFO @ Fri, 04 May 2018 08:23:31: #1 user defined the maximum tags... INFO @ Fri, 04 May 2018 08:23:31: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 04 May 2018 08:23:32: #1 tags after filtering in treatment: 73766481 INFO @ Fri, 04 May 2018 08:23:32: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 04 May 2018 08:23:32: #1 finished! INFO @ Fri, 04 May 2018 08:23:32: #2 Build Peak Model... INFO @ Fri, 04 May 2018 08:23:32: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 04 May 2018 08:23:32: #1 tags after filtering in treatment: 73766481 INFO @ Fri, 04 May 2018 08:23:32: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 04 May 2018 08:23:32: #1 finished! INFO @ Fri, 04 May 2018 08:23:32: #2 Build Peak Model... INFO @ Fri, 04 May 2018 08:23:32: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 04 May 2018 08:23:34: #1 tag size is determined as 59 bps INFO @ Fri, 04 May 2018 08:23:34: #1 tag size = 59 INFO @ Fri, 04 May 2018 08:23:34: #1 total tags in treatment: 73766481 INFO @ Fri, 04 May 2018 08:23:34: #1 user defined the maximum tags... INFO @ Fri, 04 May 2018 08:23:34: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 04 May 2018 08:23:35: #1 tags after filtering in treatment: 73766481 INFO @ Fri, 04 May 2018 08:23:35: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 04 May 2018 08:23:35: #1 finished! INFO @ Fri, 04 May 2018 08:23:35: #2 Build Peak Model... INFO @ Fri, 04 May 2018 08:23:35: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 04 May 2018 08:23:37: #2 number of paired peaks: 0 WARNING @ Fri, 04 May 2018 08:23:37: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Fri, 04 May 2018 08:23:37: Process for pairing-model is terminated! cat: SRX2202790.10_peaks.narrowPeak: そのようなファイルやディレクトリはありません INFO @ Fri, 04 May 2018 08:23:37: #2 number of paired peaks: 0 WARNING @ Fri, 04 May 2018 08:23:37: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Fri, 04 May 2018 08:23:37: Process for pairing-model is terminated! pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX2202790.10_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2202790.10_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2202790.10_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling cat: SRX2202790.20_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX2202790.20_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2202790.20_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2202790.20_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Fri, 04 May 2018 08:23:40: #2 number of paired peaks: 0 WARNING @ Fri, 04 May 2018 08:23:40: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Fri, 04 May 2018 08:23:40: Process for pairing-model is terminated! cat: SRX2202790.05_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX2202790.05_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2202790.05_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2202790.05_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。