Job ID = 6497346 SRX = SRX1995023 Genome = ce10 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-25T21:31:50 prefetch.2.10.7: 1) Downloading 'SRR3993955'... 2020-06-25T21:31:50 prefetch.2.10.7: Downloading via HTTPS... 2020-06-25T21:35:24 prefetch.2.10.7: HTTPS download succeed 2020-06-25T21:35:24 prefetch.2.10.7: 1) 'SRR3993955' was downloaded successfully Read 23770760 spots for SRR3993955/SRR3993955.sra Written 23770760 spots for SRR3993955/SRR3993955.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:27:03 23770760 reads; of these: 23770760 (100.00%) were paired; of these: 1377147 (5.79%) aligned concordantly 0 times 19232909 (80.91%) aligned concordantly exactly 1 time 3160704 (13.30%) aligned concordantly >1 times ---- 1377147 pairs aligned concordantly 0 times; of these: 861708 (62.57%) aligned discordantly 1 time ---- 515439 pairs aligned 0 times concordantly or discordantly; of these: 1030878 mates make up the pairs; of these: 506598 (49.14%) aligned 0 times 293087 (28.43%) aligned exactly 1 time 231193 (22.43%) aligned >1 times 98.93% overall alignment rate Time searching: 00:27:03 Overall time: 00:27:03 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 20 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] 329368 / 23241232 = 0.0142 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 26 Jun 2020 07:20:03: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX1995023/SRX1995023.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX1995023/SRX1995023.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX1995023/SRX1995023.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX1995023/SRX1995023.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 26 Jun 2020 07:20:03: #1 read tag files... INFO @ Fri, 26 Jun 2020 07:20:03: #1 read treatment tags... INFO @ Fri, 26 Jun 2020 07:20:08: 1000000 INFO @ Fri, 26 Jun 2020 07:20:13: 2000000 INFO @ Fri, 26 Jun 2020 07:20:18: 3000000 INFO @ Fri, 26 Jun 2020 07:20:23: 4000000 INFO @ Fri, 26 Jun 2020 07:20:28: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 26 Jun 2020 07:20:33: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX1995023/SRX1995023.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX1995023/SRX1995023.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX1995023/SRX1995023.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX1995023/SRX1995023.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 26 Jun 2020 07:20:33: #1 read tag files... INFO @ Fri, 26 Jun 2020 07:20:33: #1 read treatment tags... INFO @ Fri, 26 Jun 2020 07:20:34: 6000000 INFO @ Fri, 26 Jun 2020 07:20:39: 7000000 INFO @ Fri, 26 Jun 2020 07:20:39: 1000000 INFO @ Fri, 26 Jun 2020 07:20:44: 8000000 INFO @ Fri, 26 Jun 2020 07:20:45: 2000000 INFO @ Fri, 26 Jun 2020 07:20:50: 9000000 INFO @ Fri, 26 Jun 2020 07:20:51: 3000000 INFO @ Fri, 26 Jun 2020 07:20:55: 10000000 INFO @ Fri, 26 Jun 2020 07:20:58: 4000000 INFO @ Fri, 26 Jun 2020 07:21:01: 11000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 26 Jun 2020 07:21:03: # Command line: callpeak -t /home/okishinya/chipatlas/results/ce10/SRX1995023/SRX1995023.bam -f BAM -g ce -n /home/okishinya/chipatlas/results/ce10/SRX1995023/SRX1995023.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/ce10/SRX1995023/SRX1995023.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/ce10/SRX1995023/SRX1995023.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 26 Jun 2020 07:21:03: #1 read tag files... INFO @ Fri, 26 Jun 2020 07:21:03: #1 read treatment tags... INFO @ Fri, 26 Jun 2020 07:21:04: 5000000 INFO @ Fri, 26 Jun 2020 07:21:06: 12000000 INFO @ Fri, 26 Jun 2020 07:21:08: 1000000 INFO @ Fri, 26 Jun 2020 07:21:10: 6000000 INFO @ Fri, 26 Jun 2020 07:21:11: 13000000 INFO @ Fri, 26 Jun 2020 07:21:14: 2000000 INFO @ Fri, 26 Jun 2020 07:21:16: 7000000 INFO @ Fri, 26 Jun 2020 07:21:17: 14000000 INFO @ Fri, 26 Jun 2020 07:21:19: 3000000 INFO @ Fri, 26 Jun 2020 07:21:22: 8000000 INFO @ Fri, 26 Jun 2020 07:21:22: 15000000 INFO @ Fri, 26 Jun 2020 07:21:24: 4000000 INFO @ Fri, 26 Jun 2020 07:21:28: 16000000 INFO @ Fri, 26 Jun 2020 07:21:28: 9000000 INFO @ Fri, 26 Jun 2020 07:21:30: 5000000 INFO @ Fri, 26 Jun 2020 07:21:33: 17000000 INFO @ Fri, 26 Jun 2020 07:21:34: 10000000 INFO @ Fri, 26 Jun 2020 07:21:35: 6000000 INFO @ Fri, 26 Jun 2020 07:21:38: 18000000 INFO @ Fri, 26 Jun 2020 07:21:40: 7000000 INFO @ Fri, 26 Jun 2020 07:21:40: 11000000 INFO @ Fri, 26 Jun 2020 07:21:44: 19000000 INFO @ Fri, 26 Jun 2020 07:21:45: 8000000 INFO @ Fri, 26 Jun 2020 07:21:46: 12000000 INFO @ Fri, 26 Jun 2020 07:21:49: 20000000 INFO @ Fri, 26 Jun 2020 07:21:51: 9000000 INFO @ Fri, 26 Jun 2020 07:21:52: 13000000 INFO @ Fri, 26 Jun 2020 07:21:54: 21000000 INFO @ Fri, 26 Jun 2020 07:21:56: 10000000 INFO @ Fri, 26 Jun 2020 07:21:59: 14000000 INFO @ Fri, 26 Jun 2020 07:21:59: 22000000 INFO @ Fri, 26 Jun 2020 07:22:01: 11000000 INFO @ Fri, 26 Jun 2020 07:22:05: 15000000 INFO @ Fri, 26 Jun 2020 07:22:05: 23000000 INFO @ Fri, 26 Jun 2020 07:22:07: 12000000 INFO @ Fri, 26 Jun 2020 07:22:10: 24000000 INFO @ Fri, 26 Jun 2020 07:22:11: 16000000 INFO @ Fri, 26 Jun 2020 07:22:12: 13000000 INFO @ Fri, 26 Jun 2020 07:22:16: 25000000 INFO @ Fri, 26 Jun 2020 07:22:17: 17000000 INFO @ Fri, 26 Jun 2020 07:22:18: 14000000 INFO @ Fri, 26 Jun 2020 07:22:21: 26000000 INFO @ Fri, 26 Jun 2020 07:22:23: 18000000 INFO @ Fri, 26 Jun 2020 07:22:23: 15000000 INFO @ Fri, 26 Jun 2020 07:22:27: 27000000 INFO @ Fri, 26 Jun 2020 07:22:29: 16000000 INFO @ Fri, 26 Jun 2020 07:22:29: 19000000 INFO @ Fri, 26 Jun 2020 07:22:32: 28000000 INFO @ Fri, 26 Jun 2020 07:22:34: 17000000 INFO @ Fri, 26 Jun 2020 07:22:35: 20000000 INFO @ Fri, 26 Jun 2020 07:22:38: 29000000 INFO @ Fri, 26 Jun 2020 07:22:40: 18000000 INFO @ Fri, 26 Jun 2020 07:22:41: 21000000 INFO @ Fri, 26 Jun 2020 07:22:43: 30000000 INFO @ Fri, 26 Jun 2020 07:22:45: 19000000 INFO @ Fri, 26 Jun 2020 07:22:47: 22000000 INFO @ Fri, 26 Jun 2020 07:22:49: 31000000 INFO @ Fri, 26 Jun 2020 07:22:51: 20000000 INFO @ Fri, 26 Jun 2020 07:22:53: 23000000 INFO @ Fri, 26 Jun 2020 07:22:54: 32000000 INFO @ Fri, 26 Jun 2020 07:22:56: 21000000 INFO @ Fri, 26 Jun 2020 07:22:59: 33000000 INFO @ Fri, 26 Jun 2020 07:23:00: 24000000 INFO @ Fri, 26 Jun 2020 07:23:02: 22000000 INFO @ Fri, 26 Jun 2020 07:23:05: 34000000 INFO @ Fri, 26 Jun 2020 07:23:06: 25000000 INFO @ Fri, 26 Jun 2020 07:23:07: 23000000 INFO @ Fri, 26 Jun 2020 07:23:10: 35000000 INFO @ Fri, 26 Jun 2020 07:23:12: 26000000 INFO @ Fri, 26 Jun 2020 07:23:12: 24000000 INFO @ Fri, 26 Jun 2020 07:23:15: 36000000 INFO @ Fri, 26 Jun 2020 07:23:18: 27000000 INFO @ Fri, 26 Jun 2020 07:23:18: 25000000 INFO @ Fri, 26 Jun 2020 07:23:21: 37000000 INFO @ Fri, 26 Jun 2020 07:23:23: 26000000 INFO @ Fri, 26 Jun 2020 07:23:24: 28000000 INFO @ Fri, 26 Jun 2020 07:23:26: 38000000 INFO @ Fri, 26 Jun 2020 07:23:29: 27000000 INFO @ Fri, 26 Jun 2020 07:23:30: 29000000 INFO @ Fri, 26 Jun 2020 07:23:31: 39000000 INFO @ Fri, 26 Jun 2020 07:23:34: 28000000 INFO @ Fri, 26 Jun 2020 07:23:36: 30000000 INFO @ Fri, 26 Jun 2020 07:23:37: 40000000 INFO @ Fri, 26 Jun 2020 07:23:40: 29000000 INFO @ Fri, 26 Jun 2020 07:23:42: 31000000 INFO @ Fri, 26 Jun 2020 07:23:42: 41000000 INFO @ Fri, 26 Jun 2020 07:23:45: 30000000 INFO @ Fri, 26 Jun 2020 07:23:48: 42000000 INFO @ Fri, 26 Jun 2020 07:23:48: 32000000 INFO @ Fri, 26 Jun 2020 07:23:50: 31000000 INFO @ Fri, 26 Jun 2020 07:23:53: 43000000 INFO @ Fri, 26 Jun 2020 07:23:55: 33000000 INFO @ Fri, 26 Jun 2020 07:23:56: 32000000 INFO @ Fri, 26 Jun 2020 07:23:58: 44000000 INFO @ Fri, 26 Jun 2020 07:24:01: 34000000 INFO @ Fri, 26 Jun 2020 07:24:01: 33000000 INFO @ Fri, 26 Jun 2020 07:24:04: 45000000 INFO @ Fri, 26 Jun 2020 07:24:06: 34000000 INFO @ Fri, 26 Jun 2020 07:24:07: 35000000 INFO @ Fri, 26 Jun 2020 07:24:09: 46000000 INFO @ Fri, 26 Jun 2020 07:24:11: #1 tag size is determined as 50 bps INFO @ Fri, 26 Jun 2020 07:24:11: #1 tag size = 50 INFO @ Fri, 26 Jun 2020 07:24:11: #1 total tags in treatment: 22068864 INFO @ Fri, 26 Jun 2020 07:24:11: #1 user defined the maximum tags... INFO @ Fri, 26 Jun 2020 07:24:11: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 26 Jun 2020 07:24:12: 35000000 INFO @ Fri, 26 Jun 2020 07:24:12: #1 tags after filtering in treatment: 19855199 INFO @ Fri, 26 Jun 2020 07:24:12: #1 Redundant rate of treatment: 0.10 INFO @ Fri, 26 Jun 2020 07:24:12: #1 finished! INFO @ Fri, 26 Jun 2020 07:24:12: #2 Build Peak Model... INFO @ Fri, 26 Jun 2020 07:24:12: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 26 Jun 2020 07:24:13: 36000000 INFO @ Fri, 26 Jun 2020 07:24:13: #2 number of paired peaks: 251 WARNING @ Fri, 26 Jun 2020 07:24:13: Fewer paired peaks (251) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 251 pairs to build model! INFO @ Fri, 26 Jun 2020 07:24:13: start model_add_line... INFO @ Fri, 26 Jun 2020 07:24:13: start X-correlation... INFO @ Fri, 26 Jun 2020 07:24:13: end of X-cor INFO @ Fri, 26 Jun 2020 07:24:13: #2 finished! INFO @ Fri, 26 Jun 2020 07:24:13: #2 predicted fragment length is 118 bps INFO @ Fri, 26 Jun 2020 07:24:13: #2 alternative fragment length(s) may be 3,118 bps INFO @ Fri, 26 Jun 2020 07:24:13: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX1995023/SRX1995023.05_model.r INFO @ Fri, 26 Jun 2020 07:24:17: 36000000 BedGraph に変換しました。 INFO @ Fri, 26 Jun 2020 07:24:19: 37000000 INFO @ Fri, 26 Jun 2020 07:24:22: 37000000 INFO @ Fri, 26 Jun 2020 07:24:25: 38000000 INFO @ Fri, 26 Jun 2020 07:24:27: 38000000 INFO @ Fri, 26 Jun 2020 07:24:31: 39000000 INFO @ Fri, 26 Jun 2020 07:24:32: 39000000 INFO @ Fri, 26 Jun 2020 07:24:37: 40000000 INFO @ Fri, 26 Jun 2020 07:24:37: 40000000 INFO @ Fri, 26 Jun 2020 07:24:43: 41000000 BigWig に変換中... INFO @ Fri, 26 Jun 2020 07:24:43: #3 Call peaks... INFO @ Fri, 26 Jun 2020 07:24:43: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 26 Jun 2020 07:24:43: 41000000 INFO @ Fri, 26 Jun 2020 07:24:49: 42000000 INFO @ Fri, 26 Jun 2020 07:24:49: 42000000 INFO @ Fri, 26 Jun 2020 07:24:55: 43000000 INFO @ Fri, 26 Jun 2020 07:24:55: 43000000 INFO @ Fri, 26 Jun 2020 07:25:01: 44000000 INFO @ Fri, 26 Jun 2020 07:25:01: 44000000 INFO @ Fri, 26 Jun 2020 07:25:06: 45000000 INFO @ Fri, 26 Jun 2020 07:25:07: 45000000 INFO @ Fri, 26 Jun 2020 07:25:12: 46000000 INFO @ Fri, 26 Jun 2020 07:25:13: 46000000 INFO @ Fri, 26 Jun 2020 07:25:15: #1 tag size is determined as 50 bps INFO @ Fri, 26 Jun 2020 07:25:15: #1 tag size = 50 INFO @ Fri, 26 Jun 2020 07:25:15: #1 total tags in treatment: 22068864 INFO @ Fri, 26 Jun 2020 07:25:15: #1 user defined the maximum tags... INFO @ Fri, 26 Jun 2020 07:25:15: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 26 Jun 2020 07:25:15: #1 tags after filtering in treatment: 19855199 INFO @ Fri, 26 Jun 2020 07:25:15: #1 Redundant rate of treatment: 0.10 INFO @ Fri, 26 Jun 2020 07:25:15: #1 finished! INFO @ Fri, 26 Jun 2020 07:25:15: #2 Build Peak Model... INFO @ Fri, 26 Jun 2020 07:25:15: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 26 Jun 2020 07:25:15: #1 tag size is determined as 50 bps INFO @ Fri, 26 Jun 2020 07:25:15: #1 tag size = 50 INFO @ Fri, 26 Jun 2020 07:25:15: #1 total tags in treatment: 22068864 INFO @ Fri, 26 Jun 2020 07:25:15: #1 user defined the maximum tags... INFO @ Fri, 26 Jun 2020 07:25:15: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 26 Jun 2020 07:25:16: #1 tags after filtering in treatment: 19855199 INFO @ Fri, 26 Jun 2020 07:25:16: #1 Redundant rate of treatment: 0.10 INFO @ Fri, 26 Jun 2020 07:25:16: #1 finished! INFO @ Fri, 26 Jun 2020 07:25:16: #2 Build Peak Model... INFO @ Fri, 26 Jun 2020 07:25:16: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 26 Jun 2020 07:25:16: #2 number of paired peaks: 251 WARNING @ Fri, 26 Jun 2020 07:25:16: Fewer paired peaks (251) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 251 pairs to build model! INFO @ Fri, 26 Jun 2020 07:25:16: start model_add_line... INFO @ Fri, 26 Jun 2020 07:25:17: start X-correlation... INFO @ Fri, 26 Jun 2020 07:25:17: end of X-cor INFO @ Fri, 26 Jun 2020 07:25:17: #2 finished! INFO @ Fri, 26 Jun 2020 07:25:17: #2 predicted fragment length is 118 bps INFO @ Fri, 26 Jun 2020 07:25:17: #2 alternative fragment length(s) may be 3,118 bps INFO @ Fri, 26 Jun 2020 07:25:17: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX1995023/SRX1995023.10_model.r INFO @ Fri, 26 Jun 2020 07:25:17: #2 number of paired peaks: 251 WARNING @ Fri, 26 Jun 2020 07:25:17: Fewer paired peaks (251) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 251 pairs to build model! INFO @ Fri, 26 Jun 2020 07:25:17: start model_add_line... INFO @ Fri, 26 Jun 2020 07:25:17: start X-correlation... INFO @ Fri, 26 Jun 2020 07:25:17: end of X-cor INFO @ Fri, 26 Jun 2020 07:25:17: #2 finished! INFO @ Fri, 26 Jun 2020 07:25:17: #2 predicted fragment length is 118 bps INFO @ Fri, 26 Jun 2020 07:25:17: #2 alternative fragment length(s) may be 3,118 bps INFO @ Fri, 26 Jun 2020 07:25:17: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/ce10/SRX1995023/SRX1995023.20_model.r INFO @ Fri, 26 Jun 2020 07:25:22: #3 Call peaks for each chromosome... INFO @ Fri, 26 Jun 2020 07:25:34: #3 Call peaks... INFO @ Fri, 26 Jun 2020 07:25:34: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 26 Jun 2020 07:25:34: #3 Call peaks... INFO @ Fri, 26 Jun 2020 07:25:34: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 26 Jun 2020 07:25:38: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX1995023/SRX1995023.05_peaks.xls INFO @ Fri, 26 Jun 2020 07:25:38: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX1995023/SRX1995023.05_peaks.narrowPeak INFO @ Fri, 26 Jun 2020 07:25:38: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX1995023/SRX1995023.05_summits.bed INFO @ Fri, 26 Jun 2020 07:25:38: Done! pass1 - making usageList (7 chroms): 0 millis pass2 - checking and writing primary data (477 records, 4 fields): 2 millis CompletedMACS2peakCalling BigWig に変換しました。 INFO @ Fri, 26 Jun 2020 07:26:11: #3 Call peaks for each chromosome... INFO @ Fri, 26 Jun 2020 07:26:13: #3 Call peaks for each chromosome... INFO @ Fri, 26 Jun 2020 07:26:28: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX1995023/SRX1995023.10_peaks.xls INFO @ Fri, 26 Jun 2020 07:26:28: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX1995023/SRX1995023.10_peaks.narrowPeak INFO @ Fri, 26 Jun 2020 07:26:28: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX1995023/SRX1995023.10_summits.bed INFO @ Fri, 26 Jun 2020 07:26:28: Done! pass1 - making usageList (7 chroms): 0 millis pass2 - checking and writing primary data (353 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Fri, 26 Jun 2020 07:26:30: #4 Write output xls file... /home/okishinya/chipatlas/results/ce10/SRX1995023/SRX1995023.20_peaks.xls INFO @ Fri, 26 Jun 2020 07:26:31: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/ce10/SRX1995023/SRX1995023.20_peaks.narrowPeak INFO @ Fri, 26 Jun 2020 07:26:31: #4 Write summits bed file... /home/okishinya/chipatlas/results/ce10/SRX1995023/SRX1995023.20_summits.bed INFO @ Fri, 26 Jun 2020 07:26:31: Done! pass1 - making usageList (6 chroms): 0 millis pass2 - checking and writing primary data (225 records, 4 fields): 2 millis CompletedMACS2peakCalling