Job ID = 9157382 sra ファイルのダウンロード中... Completed: 4552313K bytes transferred in 35 seconds (1058988K bits/sec), in 1 file, 2 directories. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Written 100922140 spots for /home/okishinya/chipatlas/results/ce10/SRX1674098/SRR3320144.sra Written 100922140 spots total rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:53:23 100922140 reads; of these: 100922140 (100.00%) were unpaired; of these: 4575014 (4.53%) aligned 0 times 85508766 (84.73%) aligned exactly 1 time 10838360 (10.74%) aligned >1 times 95.47% overall alignment rate Time searching: 00:53:23 Overall time: 00:53:23 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 40 files... [bam_rmdupse_core] 50198653 / 96347126 = 0.5210 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Tue, 27 Jun 2017 13:06:36: # Command line: callpeak -t SRX1674098.bam -f BAM -g ce -n SRX1674098.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX1674098.10 # format = BAM # ChIP-seq file = ['SRX1674098.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 27 Jun 2017 13:06:36: #1 read tag files... INFO @ Tue, 27 Jun 2017 13:06:36: #1 read treatment tags... INFO @ Tue, 27 Jun 2017 13:06:36: # Command line: callpeak -t SRX1674098.bam -f BAM -g ce -n SRX1674098.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX1674098.20 # format = BAM # ChIP-seq file = ['SRX1674098.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 27 Jun 2017 13:06:36: #1 read tag files... INFO @ Tue, 27 Jun 2017 13:06:36: #1 read treatment tags... INFO @ Tue, 27 Jun 2017 13:06:36: # Command line: callpeak -t SRX1674098.bam -f BAM -g ce -n SRX1674098.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX1674098.05 # format = BAM # ChIP-seq file = ['SRX1674098.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 27 Jun 2017 13:06:36: #1 read tag files... INFO @ Tue, 27 Jun 2017 13:06:36: #1 read treatment tags... INFO @ Tue, 27 Jun 2017 13:06:44: 1000000 INFO @ Tue, 27 Jun 2017 13:06:45: 1000000 INFO @ Tue, 27 Jun 2017 13:06:45: 1000000 INFO @ Tue, 27 Jun 2017 13:06:52: 2000000 INFO @ Tue, 27 Jun 2017 13:06:54: 2000000 INFO @ Tue, 27 Jun 2017 13:06:54: 2000000 INFO @ Tue, 27 Jun 2017 13:07:00: 3000000 INFO @ Tue, 27 Jun 2017 13:07:02: 3000000 INFO @ Tue, 27 Jun 2017 13:07:03: 3000000 INFO @ Tue, 27 Jun 2017 13:07:08: 4000000 INFO @ Tue, 27 Jun 2017 13:07:11: 4000000 INFO @ Tue, 27 Jun 2017 13:07:11: 4000000 INFO @ Tue, 27 Jun 2017 13:07:15: 5000000 INFO @ Tue, 27 Jun 2017 13:07:20: 5000000 INFO @ Tue, 27 Jun 2017 13:07:20: 5000000 INFO @ Tue, 27 Jun 2017 13:07:23: 6000000 INFO @ Tue, 27 Jun 2017 13:07:28: 6000000 INFO @ Tue, 27 Jun 2017 13:07:28: 6000000 INFO @ Tue, 27 Jun 2017 13:07:31: 7000000 INFO @ Tue, 27 Jun 2017 13:07:37: 7000000 INFO @ Tue, 27 Jun 2017 13:07:37: 7000000 INFO @ Tue, 27 Jun 2017 13:07:39: 8000000 INFO @ Tue, 27 Jun 2017 13:07:46: 8000000 INFO @ Tue, 27 Jun 2017 13:07:46: 8000000 INFO @ Tue, 27 Jun 2017 13:07:46: 9000000 INFO @ Tue, 27 Jun 2017 13:07:54: 10000000 INFO @ Tue, 27 Jun 2017 13:07:54: 9000000 INFO @ Tue, 27 Jun 2017 13:07:54: 9000000 INFO @ Tue, 27 Jun 2017 13:08:02: 11000000 INFO @ Tue, 27 Jun 2017 13:08:03: 10000000 INFO @ Tue, 27 Jun 2017 13:08:03: 10000000 INFO @ Tue, 27 Jun 2017 13:08:10: 12000000 INFO @ Tue, 27 Jun 2017 13:08:12: 11000000 INFO @ Tue, 27 Jun 2017 13:08:12: 11000000 INFO @ Tue, 27 Jun 2017 13:08:18: 13000000 INFO @ Tue, 27 Jun 2017 13:08:20: 12000000 INFO @ Tue, 27 Jun 2017 13:08:20: 12000000 INFO @ Tue, 27 Jun 2017 13:08:26: 14000000 INFO @ Tue, 27 Jun 2017 13:08:29: 13000000 INFO @ Tue, 27 Jun 2017 13:08:29: 13000000 INFO @ Tue, 27 Jun 2017 13:08:34: 15000000 INFO @ Tue, 27 Jun 2017 13:08:38: 14000000 INFO @ Tue, 27 Jun 2017 13:08:38: 14000000 INFO @ Tue, 27 Jun 2017 13:08:41: 16000000 INFO @ Tue, 27 Jun 2017 13:08:47: 15000000 INFO @ Tue, 27 Jun 2017 13:08:47: 15000000 INFO @ Tue, 27 Jun 2017 13:08:49: 17000000 INFO @ Tue, 27 Jun 2017 13:08:55: 16000000 INFO @ Tue, 27 Jun 2017 13:08:56: 16000000 INFO @ Tue, 27 Jun 2017 13:08:57: 18000000 INFO @ Tue, 27 Jun 2017 13:09:04: 17000000 INFO @ Tue, 27 Jun 2017 13:09:05: 19000000 INFO @ Tue, 27 Jun 2017 13:09:05: 17000000 INFO @ Tue, 27 Jun 2017 13:09:12: 20000000 INFO @ Tue, 27 Jun 2017 13:09:13: 18000000 INFO @ Tue, 27 Jun 2017 13:09:14: 18000000 INFO @ Tue, 27 Jun 2017 13:09:20: 21000000 INFO @ Tue, 27 Jun 2017 13:09:23: 19000000 INFO @ Tue, 27 Jun 2017 13:09:24: 19000000 INFO @ Tue, 27 Jun 2017 13:09:28: 22000000 INFO @ Tue, 27 Jun 2017 13:09:32: 20000000 INFO @ Tue, 27 Jun 2017 13:09:34: 20000000 INFO @ Tue, 27 Jun 2017 13:09:36: 23000000 INFO @ Tue, 27 Jun 2017 13:09:41: 21000000 INFO @ Tue, 27 Jun 2017 13:09:43: 21000000 INFO @ Tue, 27 Jun 2017 13:09:43: 24000000 INFO @ Tue, 27 Jun 2017 13:09:50: 22000000 INFO @ Tue, 27 Jun 2017 13:09:51: 25000000 INFO @ Tue, 27 Jun 2017 13:09:53: 22000000 INFO @ Tue, 27 Jun 2017 13:09:59: 26000000 INFO @ Tue, 27 Jun 2017 13:09:59: 23000000 INFO @ Tue, 27 Jun 2017 13:10:03: 23000000 INFO @ Tue, 27 Jun 2017 13:10:06: 27000000 INFO @ Tue, 27 Jun 2017 13:10:09: 24000000 INFO @ Tue, 27 Jun 2017 13:10:12: 24000000 INFO @ Tue, 27 Jun 2017 13:10:14: 28000000 INFO @ Tue, 27 Jun 2017 13:10:18: 25000000 INFO @ Tue, 27 Jun 2017 13:10:22: 29000000 INFO @ Tue, 27 Jun 2017 13:10:22: 25000000 INFO @ Tue, 27 Jun 2017 13:10:27: 26000000 INFO @ Tue, 27 Jun 2017 13:10:29: 30000000 INFO @ Tue, 27 Jun 2017 13:10:32: 26000000 INFO @ Tue, 27 Jun 2017 13:10:37: 27000000 INFO @ Tue, 27 Jun 2017 13:10:37: 31000000 INFO @ Tue, 27 Jun 2017 13:10:41: 27000000 INFO @ Tue, 27 Jun 2017 13:10:45: 32000000 INFO @ Tue, 27 Jun 2017 13:10:46: 28000000 INFO @ Tue, 27 Jun 2017 13:10:50: 28000000 INFO @ Tue, 27 Jun 2017 13:10:52: 33000000 INFO @ Tue, 27 Jun 2017 13:10:56: 29000000 INFO @ Tue, 27 Jun 2017 13:11:00: 34000000 INFO @ Tue, 27 Jun 2017 13:11:00: 29000000 INFO @ Tue, 27 Jun 2017 13:11:05: 30000000 INFO @ Tue, 27 Jun 2017 13:11:07: 35000000 INFO @ Tue, 27 Jun 2017 13:11:09: 30000000 INFO @ Tue, 27 Jun 2017 13:11:14: 31000000 INFO @ Tue, 27 Jun 2017 13:11:15: 36000000 INFO @ Tue, 27 Jun 2017 13:11:19: 31000000 INFO @ Tue, 27 Jun 2017 13:11:22: 37000000 INFO @ Tue, 27 Jun 2017 13:11:24: 32000000 INFO @ Tue, 27 Jun 2017 13:11:28: 32000000 INFO @ Tue, 27 Jun 2017 13:11:30: 38000000 INFO @ Tue, 27 Jun 2017 13:11:33: 33000000 INFO @ Tue, 27 Jun 2017 13:11:38: 39000000 INFO @ Tue, 27 Jun 2017 13:11:38: 33000000 INFO @ Tue, 27 Jun 2017 13:11:43: 34000000 INFO @ Tue, 27 Jun 2017 13:11:45: 40000000 INFO @ Tue, 27 Jun 2017 13:11:48: 34000000 INFO @ Tue, 27 Jun 2017 13:11:53: 35000000 INFO @ Tue, 27 Jun 2017 13:11:53: 41000000 INFO @ Tue, 27 Jun 2017 13:11:57: 35000000 INFO @ Tue, 27 Jun 2017 13:12:00: 42000000 INFO @ Tue, 27 Jun 2017 13:12:02: 36000000 INFO @ Tue, 27 Jun 2017 13:12:07: 36000000 INFO @ Tue, 27 Jun 2017 13:12:08: 43000000 INFO @ Tue, 27 Jun 2017 13:12:12: 37000000 INFO @ Tue, 27 Jun 2017 13:12:15: 44000000 INFO @ Tue, 27 Jun 2017 13:12:16: 37000000 INFO @ Tue, 27 Jun 2017 13:12:21: 38000000 INFO @ Tue, 27 Jun 2017 13:12:23: 45000000 INFO @ Tue, 27 Jun 2017 13:12:26: 38000000 INFO @ Tue, 27 Jun 2017 13:12:30: 46000000 INFO @ Tue, 27 Jun 2017 13:12:31: 39000000 INFO @ Tue, 27 Jun 2017 13:12:32: #1 tag size is determined as 101 bps INFO @ Tue, 27 Jun 2017 13:12:32: #1 tag size = 101 INFO @ Tue, 27 Jun 2017 13:12:32: #1 total tags in treatment: 46148473 INFO @ Tue, 27 Jun 2017 13:12:32: #1 user defined the maximum tags... INFO @ Tue, 27 Jun 2017 13:12:32: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 27 Jun 2017 13:12:33: #1 tags after filtering in treatment: 46148473 INFO @ Tue, 27 Jun 2017 13:12:33: #1 Redundant rate of treatment: 0.00 INFO @ Tue, 27 Jun 2017 13:12:33: #1 finished! INFO @ Tue, 27 Jun 2017 13:12:33: #2 Build Peak Model... INFO @ Tue, 27 Jun 2017 13:12:33: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 27 Jun 2017 13:12:35: 39000000 INFO @ Tue, 27 Jun 2017 13:12:36: #2 number of paired peaks: 0 WARNING @ Tue, 27 Jun 2017 13:12:36: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Tue, 27 Jun 2017 13:12:36: Process for pairing-model is terminated! cat: SRX1674098.20_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 3 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX1674098.20_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX1674098.20_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX1674098.20_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Tue, 27 Jun 2017 13:12:40: 40000000 INFO @ Tue, 27 Jun 2017 13:12:44: 40000000 INFO @ Tue, 27 Jun 2017 13:12:49: 41000000 INFO @ Tue, 27 Jun 2017 13:12:54: 41000000 INFO @ Tue, 27 Jun 2017 13:12:58: 42000000 INFO @ Tue, 27 Jun 2017 13:13:02: 42000000 INFO @ Tue, 27 Jun 2017 13:13:07: 43000000 INFO @ Tue, 27 Jun 2017 13:13:11: 43000000 INFO @ Tue, 27 Jun 2017 13:13:16: 44000000 INFO @ Tue, 27 Jun 2017 13:13:20: 44000000 INFO @ Tue, 27 Jun 2017 13:13:24: 45000000 INFO @ Tue, 27 Jun 2017 13:13:29: 45000000 INFO @ Tue, 27 Jun 2017 13:13:33: 46000000 INFO @ Tue, 27 Jun 2017 13:13:35: #1 tag size is determined as 101 bps INFO @ Tue, 27 Jun 2017 13:13:35: #1 tag size = 101 INFO @ Tue, 27 Jun 2017 13:13:35: #1 total tags in treatment: 46148473 INFO @ Tue, 27 Jun 2017 13:13:35: #1 user defined the maximum tags... INFO @ Tue, 27 Jun 2017 13:13:35: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 27 Jun 2017 13:13:36: #1 tags after filtering in treatment: 46148473 INFO @ Tue, 27 Jun 2017 13:13:36: #1 Redundant rate of treatment: 0.00 INFO @ Tue, 27 Jun 2017 13:13:36: #1 finished! INFO @ Tue, 27 Jun 2017 13:13:36: #2 Build Peak Model... INFO @ Tue, 27 Jun 2017 13:13:36: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 27 Jun 2017 13:13:38: 46000000 INFO @ Tue, 27 Jun 2017 13:13:39: #2 number of paired peaks: 0 WARNING @ Tue, 27 Jun 2017 13:13:39: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Tue, 27 Jun 2017 13:13:39: Process for pairing-model is terminated! cat: SRX1674098.05_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX1674098.05_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX1674098.05_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX1674098.05_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Tue, 27 Jun 2017 13:13:39: #1 tag size is determined as 101 bps INFO @ Tue, 27 Jun 2017 13:13:39: #1 tag size = 101 INFO @ Tue, 27 Jun 2017 13:13:39: #1 total tags in treatment: 46148473 INFO @ Tue, 27 Jun 2017 13:13:39: #1 user defined the maximum tags... INFO @ Tue, 27 Jun 2017 13:13:39: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 27 Jun 2017 13:13:40: #1 tags after filtering in treatment: 46148473 INFO @ Tue, 27 Jun 2017 13:13:40: #1 Redundant rate of treatment: 0.00 INFO @ Tue, 27 Jun 2017 13:13:40: #1 finished! INFO @ Tue, 27 Jun 2017 13:13:40: #2 Build Peak Model... INFO @ Tue, 27 Jun 2017 13:13:40: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 27 Jun 2017 13:13:43: #2 number of paired peaks: 0 WARNING @ Tue, 27 Jun 2017 13:13:43: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Tue, 27 Jun 2017 13:13:43: Process for pairing-model is terminated! cat: SRX1674098.10_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX1674098.10_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX1674098.10_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX1674098.10_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。