Job ID = 9157380 sra ファイルのダウンロード中... Completed: 3594946K bytes transferred in 29 seconds (990740K bits/sec), in 1 file, 2 directories. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Written 103005862 spots for /home/okishinya/chipatlas/results/ce10/SRX1674093/SRR3320139.sra Written 103005862 spots total rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:25:17 103005862 reads; of these: 103005862 (100.00%) were unpaired; of these: 1294938 (1.26%) aligned 0 times 91195041 (88.53%) aligned exactly 1 time 10515883 (10.21%) aligned >1 times 98.74% overall alignment rate Time searching: 00:25:17 Overall time: 00:25:17 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 7 sequences. [bam_sort_core] merging from 44 files... [bam_rmdupse_core] 59192173 / 101710924 = 0.5820 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Tue, 27 Jun 2017 12:24:02: # Command line: callpeak -t SRX1674093.bam -f BAM -g ce -n SRX1674093.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX1674093.05 # format = BAM # ChIP-seq file = ['SRX1674093.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 27 Jun 2017 12:24:02: #1 read tag files... INFO @ Tue, 27 Jun 2017 12:24:02: #1 read treatment tags... INFO @ Tue, 27 Jun 2017 12:24:02: # Command line: callpeak -t SRX1674093.bam -f BAM -g ce -n SRX1674093.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX1674093.20 # format = BAM # ChIP-seq file = ['SRX1674093.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 27 Jun 2017 12:24:02: #1 read tag files... INFO @ Tue, 27 Jun 2017 12:24:02: #1 read treatment tags... INFO @ Tue, 27 Jun 2017 12:24:02: # Command line: callpeak -t SRX1674093.bam -f BAM -g ce -n SRX1674093.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX1674093.10 # format = BAM # ChIP-seq file = ['SRX1674093.bam'] # control file = None # effective genome size = 9.00e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 27 Jun 2017 12:24:02: #1 read tag files... INFO @ Tue, 27 Jun 2017 12:24:02: #1 read treatment tags... INFO @ Tue, 27 Jun 2017 12:24:08: 1000000 INFO @ Tue, 27 Jun 2017 12:24:08: 1000000 INFO @ Tue, 27 Jun 2017 12:24:08: 1000000 INFO @ Tue, 27 Jun 2017 12:24:14: 2000000 INFO @ Tue, 27 Jun 2017 12:24:15: 2000000 INFO @ Tue, 27 Jun 2017 12:24:15: 2000000 INFO @ Tue, 27 Jun 2017 12:24:21: 3000000 INFO @ Tue, 27 Jun 2017 12:24:21: 3000000 INFO @ Tue, 27 Jun 2017 12:24:21: 3000000 INFO @ Tue, 27 Jun 2017 12:24:27: 4000000 INFO @ Tue, 27 Jun 2017 12:24:27: 4000000 INFO @ Tue, 27 Jun 2017 12:24:27: 4000000 INFO @ Tue, 27 Jun 2017 12:24:33: 5000000 INFO @ Tue, 27 Jun 2017 12:24:33: 5000000 INFO @ Tue, 27 Jun 2017 12:24:34: 5000000 INFO @ Tue, 27 Jun 2017 12:24:40: 6000000 INFO @ Tue, 27 Jun 2017 12:24:40: 6000000 INFO @ Tue, 27 Jun 2017 12:24:40: 6000000 INFO @ Tue, 27 Jun 2017 12:24:46: 7000000 INFO @ Tue, 27 Jun 2017 12:24:46: 7000000 INFO @ Tue, 27 Jun 2017 12:24:47: 7000000 INFO @ Tue, 27 Jun 2017 12:24:53: 8000000 INFO @ Tue, 27 Jun 2017 12:24:53: 8000000 INFO @ Tue, 27 Jun 2017 12:24:53: 8000000 INFO @ Tue, 27 Jun 2017 12:24:59: 9000000 INFO @ Tue, 27 Jun 2017 12:24:59: 9000000 INFO @ Tue, 27 Jun 2017 12:25:00: 9000000 INFO @ Tue, 27 Jun 2017 12:25:05: 10000000 INFO @ Tue, 27 Jun 2017 12:25:05: 10000000 INFO @ Tue, 27 Jun 2017 12:25:07: 10000000 INFO @ Tue, 27 Jun 2017 12:25:12: 11000000 INFO @ Tue, 27 Jun 2017 12:25:12: 11000000 INFO @ Tue, 27 Jun 2017 12:25:13: 11000000 INFO @ Tue, 27 Jun 2017 12:25:18: 12000000 INFO @ Tue, 27 Jun 2017 12:25:18: 12000000 INFO @ Tue, 27 Jun 2017 12:25:20: 12000000 INFO @ Tue, 27 Jun 2017 12:25:24: 13000000 INFO @ Tue, 27 Jun 2017 12:25:25: 13000000 INFO @ Tue, 27 Jun 2017 12:25:26: 13000000 INFO @ Tue, 27 Jun 2017 12:25:31: 14000000 INFO @ Tue, 27 Jun 2017 12:25:31: 14000000 INFO @ Tue, 27 Jun 2017 12:25:33: 14000000 INFO @ Tue, 27 Jun 2017 12:25:37: 15000000 INFO @ Tue, 27 Jun 2017 12:25:38: 15000000 INFO @ Tue, 27 Jun 2017 12:25:39: 15000000 INFO @ Tue, 27 Jun 2017 12:25:43: 16000000 INFO @ Tue, 27 Jun 2017 12:25:44: 16000000 INFO @ Tue, 27 Jun 2017 12:25:46: 16000000 INFO @ Tue, 27 Jun 2017 12:25:49: 17000000 INFO @ Tue, 27 Jun 2017 12:25:50: 17000000 INFO @ Tue, 27 Jun 2017 12:25:52: 17000000 INFO @ Tue, 27 Jun 2017 12:25:56: 18000000 INFO @ Tue, 27 Jun 2017 12:25:57: 18000000 INFO @ Tue, 27 Jun 2017 12:25:59: 18000000 INFO @ Tue, 27 Jun 2017 12:26:02: 19000000 INFO @ Tue, 27 Jun 2017 12:26:03: 19000000 INFO @ Tue, 27 Jun 2017 12:26:05: 19000000 INFO @ Tue, 27 Jun 2017 12:26:08: 20000000 INFO @ Tue, 27 Jun 2017 12:26:09: 20000000 INFO @ Tue, 27 Jun 2017 12:26:12: 20000000 INFO @ Tue, 27 Jun 2017 12:26:14: 21000000 INFO @ Tue, 27 Jun 2017 12:26:16: 21000000 INFO @ Tue, 27 Jun 2017 12:26:18: 21000000 INFO @ Tue, 27 Jun 2017 12:26:21: 22000000 INFO @ Tue, 27 Jun 2017 12:26:22: 22000000 INFO @ Tue, 27 Jun 2017 12:26:25: 22000000 INFO @ Tue, 27 Jun 2017 12:26:27: 23000000 INFO @ Tue, 27 Jun 2017 12:26:28: 23000000 INFO @ Tue, 27 Jun 2017 12:26:32: 23000000 INFO @ Tue, 27 Jun 2017 12:26:33: 24000000 INFO @ Tue, 27 Jun 2017 12:26:35: 24000000 INFO @ Tue, 27 Jun 2017 12:26:38: 24000000 INFO @ Tue, 27 Jun 2017 12:26:39: 25000000 INFO @ Tue, 27 Jun 2017 12:26:41: 25000000 INFO @ Tue, 27 Jun 2017 12:26:45: 25000000 INFO @ Tue, 27 Jun 2017 12:26:46: 26000000 INFO @ Tue, 27 Jun 2017 12:26:48: 26000000 INFO @ Tue, 27 Jun 2017 12:26:51: 26000000 INFO @ Tue, 27 Jun 2017 12:26:52: 27000000 INFO @ Tue, 27 Jun 2017 12:26:54: 27000000 INFO @ Tue, 27 Jun 2017 12:26:58: 27000000 INFO @ Tue, 27 Jun 2017 12:26:58: 28000000 INFO @ Tue, 27 Jun 2017 12:27:01: 28000000 INFO @ Tue, 27 Jun 2017 12:27:04: 28000000 INFO @ Tue, 27 Jun 2017 12:27:04: 29000000 INFO @ Tue, 27 Jun 2017 12:27:07: 29000000 INFO @ Tue, 27 Jun 2017 12:27:11: 30000000 INFO @ Tue, 27 Jun 2017 12:27:11: 29000000 INFO @ Tue, 27 Jun 2017 12:27:14: 30000000 INFO @ Tue, 27 Jun 2017 12:27:17: 31000000 INFO @ Tue, 27 Jun 2017 12:27:18: 30000000 INFO @ Tue, 27 Jun 2017 12:27:20: 31000000 INFO @ Tue, 27 Jun 2017 12:27:23: 32000000 INFO @ Tue, 27 Jun 2017 12:27:24: 31000000 INFO @ Tue, 27 Jun 2017 12:27:26: 32000000 INFO @ Tue, 27 Jun 2017 12:27:29: 33000000 INFO @ Tue, 27 Jun 2017 12:27:31: 32000000 INFO @ Tue, 27 Jun 2017 12:27:33: 33000000 INFO @ Tue, 27 Jun 2017 12:27:36: 34000000 INFO @ Tue, 27 Jun 2017 12:27:37: 33000000 INFO @ Tue, 27 Jun 2017 12:27:39: 34000000 INFO @ Tue, 27 Jun 2017 12:27:42: 35000000 INFO @ Tue, 27 Jun 2017 12:27:44: 34000000 INFO @ Tue, 27 Jun 2017 12:27:46: 35000000 INFO @ Tue, 27 Jun 2017 12:27:48: 36000000 INFO @ Tue, 27 Jun 2017 12:27:51: 35000000 INFO @ Tue, 27 Jun 2017 12:27:52: 36000000 INFO @ Tue, 27 Jun 2017 12:27:54: 37000000 INFO @ Tue, 27 Jun 2017 12:27:57: 36000000 INFO @ Tue, 27 Jun 2017 12:27:59: 37000000 INFO @ Tue, 27 Jun 2017 12:28:01: 38000000 INFO @ Tue, 27 Jun 2017 12:28:04: 37000000 INFO @ Tue, 27 Jun 2017 12:28:05: 38000000 INFO @ Tue, 27 Jun 2017 12:28:07: 39000000 INFO @ Tue, 27 Jun 2017 12:28:10: 38000000 INFO @ Tue, 27 Jun 2017 12:28:11: 39000000 INFO @ Tue, 27 Jun 2017 12:28:13: 40000000 INFO @ Tue, 27 Jun 2017 12:28:17: 39000000 INFO @ Tue, 27 Jun 2017 12:28:18: 40000000 INFO @ Tue, 27 Jun 2017 12:28:20: 41000000 INFO @ Tue, 27 Jun 2017 12:28:23: 40000000 INFO @ Tue, 27 Jun 2017 12:28:25: 41000000 INFO @ Tue, 27 Jun 2017 12:28:26: 42000000 INFO @ Tue, 27 Jun 2017 12:28:30: 41000000 INFO @ Tue, 27 Jun 2017 12:28:30: #1 tag size is determined as 50 bps INFO @ Tue, 27 Jun 2017 12:28:30: #1 tag size = 50 INFO @ Tue, 27 Jun 2017 12:28:30: #1 total tags in treatment: 42518751 INFO @ Tue, 27 Jun 2017 12:28:30: #1 user defined the maximum tags... INFO @ Tue, 27 Jun 2017 12:28:30: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 27 Jun 2017 12:28:31: #1 tags after filtering in treatment: 42518751 INFO @ Tue, 27 Jun 2017 12:28:31: #1 Redundant rate of treatment: 0.00 INFO @ Tue, 27 Jun 2017 12:28:31: #1 finished! INFO @ Tue, 27 Jun 2017 12:28:31: #2 Build Peak Model... INFO @ Tue, 27 Jun 2017 12:28:31: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 27 Jun 2017 12:28:32: 42000000 INFO @ Tue, 27 Jun 2017 12:28:33: #2 number of paired peaks: 0 WARNING @ Tue, 27 Jun 2017 12:28:33: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Tue, 27 Jun 2017 12:28:33: Process for pairing-model is terminated! cat: SRX1674093.05_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX1674093.05_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX1674093.05_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX1674093.05_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Tue, 27 Jun 2017 12:28:36: #1 tag size is determined as 50 bps INFO @ Tue, 27 Jun 2017 12:28:36: #1 tag size = 50 INFO @ Tue, 27 Jun 2017 12:28:36: #1 total tags in treatment: 42518751 INFO @ Tue, 27 Jun 2017 12:28:36: #1 user defined the maximum tags... INFO @ Tue, 27 Jun 2017 12:28:36: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 27 Jun 2017 12:28:36: 42000000 INFO @ Tue, 27 Jun 2017 12:28:36: #1 tags after filtering in treatment: 42518751 INFO @ Tue, 27 Jun 2017 12:28:36: #1 Redundant rate of treatment: 0.00 INFO @ Tue, 27 Jun 2017 12:28:36: #1 finished! INFO @ Tue, 27 Jun 2017 12:28:36: #2 Build Peak Model... INFO @ Tue, 27 Jun 2017 12:28:36: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 27 Jun 2017 12:28:39: #2 number of paired peaks: 0 WARNING @ Tue, 27 Jun 2017 12:28:39: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Tue, 27 Jun 2017 12:28:39: Process for pairing-model is terminated! cat: SRX1674093.10_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX1674093.10_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX1674093.10_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX1674093.10_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Tue, 27 Jun 2017 12:28:39: #1 tag size is determined as 50 bps INFO @ Tue, 27 Jun 2017 12:28:39: #1 tag size = 50 INFO @ Tue, 27 Jun 2017 12:28:39: #1 total tags in treatment: 42518751 INFO @ Tue, 27 Jun 2017 12:28:39: #1 user defined the maximum tags... INFO @ Tue, 27 Jun 2017 12:28:39: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 27 Jun 2017 12:28:40: #1 tags after filtering in treatment: 42518751 INFO @ Tue, 27 Jun 2017 12:28:40: #1 Redundant rate of treatment: 0.00 INFO @ Tue, 27 Jun 2017 12:28:40: #1 finished! INFO @ Tue, 27 Jun 2017 12:28:40: #2 Build Peak Model... INFO @ Tue, 27 Jun 2017 12:28:40: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 27 Jun 2017 12:28:43: #2 number of paired peaks: 0 WARNING @ Tue, 27 Jun 2017 12:28:43: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Tue, 27 Jun 2017 12:28:43: Process for pairing-model is terminated! cat: SRX1674093.20_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX1674093.20_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX1674093.20_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX1674093.20_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。